mRNA_H-elongata_contig58394.13323.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A6H5JQP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP8_9PHAE) HSP 1 Score: 230 bits (587), Expect = 3.200e-69 Identity = 131/254 (51.57%), Postives = 161/254 (63.39%), Query Frame = 1
Query: 19 VSTDAPWLIPRTIHHVWLGGKLPRPFARLRDTWRLRHEG-----------------WELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHRCYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKIRESWSPPPSICEERSCEGGPRWSNIGSSTSVLVTGPVVGETTPLAGAEGVRVSSFPGASPATDRDAVIEGREAGMKTGAGDPLAALIGGFGDGARRVR 729
+ D LIP IHH+WLG LP FARL ++W RH G WE+RLWT+ADI AFGLEN+ AYDAA+NFG+KSDILRYE+LLRHGGLYVDVDFLCL +FDDLHR YEFYAGVSNTGTFELNNGL+GCRP HPIMR+++ +I+ S PS S G P S++ + VL++G V + AG +G + G D + + G G + GAG LA L+G GD R+R
Sbjct: 86 IREDGEPLIPLKIHHIWLGSPLPAAFARLCESWLARHSGPSSQGLGHEMSKSSSTPWEVRLWTDADINAFGLENRGAYDAAQNFGQKSDILRYEILLRHGGLYVDVDFLCLSSFDDLHRRYEFYAGVSNTGTFELNNGLIGCRPGHPIMRDIVNRIKSSCCSLPSSTPP-SHPGKPSSSSV--AAGVLLSGVGVAGSVTDAGGDGXXXGTTVG-----DPLSALMGA-LGEEGGAGGLLAGLLG--GDDRARLR 328
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: D7FIJ5_ECTSI (Surface protein Sur1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ5_ECTSI) HSP 1 Score: 201 bits (512), Expect = 7.310e-62 Identity = 95/141 (67.38%), Postives = 108/141 (76.60%), Query Frame = 1
Query: 19 VSTDAPWLIPRTIHHVWLGGKLPRPFARLRDTWRLRHEG-----------------WELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHRCYEFYAGVSNTGTFELNNGLVG 390
V D LIP IHH+WLG LP FARLR++W RH G WE+RLWT+AD++AFGLEN+ AYDAA+NFG+KSDILRYEVLLRHGGLYVDVDFLCLG+FDDLH+ YEFYAGVSNTGTFELNNGL+G
Sbjct: 31 VREDGEALIPLKIHHIWLGSPLPEAFARLRESWLARHSGLSSQGRGPERSNGGSTPWEVRLWTDADVDAFGLENRGAYDAAQNFGQKSDILRYEVLLRHGGLYVDVDFLCLGSFDDLHKRYEFYAGVSNTGTFELNNGLIG 171
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A7S1CD16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD16_9STRA) HSP 1 Score: 166 bits (421), Expect = 7.860e-48 Identity = 80/151 (52.98%), Postives = 101/151 (66.89%), Query Frame = 1
Query: 25 TDA-PWLIPRTIHHVWLGGKLPRPFARLRDTWRLRH---EGWELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHRCYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKIRESWSPPPSI 465
TDA + IPR +HHVWLGG+LPR FARLR TW H GW+ LW +A++ A L N+ A+DAA N+GEKSDILRYE+L GG+YVDVD + LHR + Y G SNTGTFELNN +VGC HP++R L ++R +P P +
Sbjct: 23 TDAFDFRIPRIVHHVWLGGRLPRRFARLRATWTTTHPPSRGWQHVLWGDAEVAALTLRNRAAFDAAGNYGEKSDILRYELLWAFGGVYVDVDMQAVRPLTPLHRVCDLYVGFSNTGTFELNNAVVGCARHHPLLRRLADRVRRPQAPSPLL 173
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A836C8H1_9STRA (Surface protein Sur1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H1_9STRA) HSP 1 Score: 157 bits (398), Expect = 5.740e-45 Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 43 IPRTIHHVWLGGKLPRPFARLRDTWRLRHEGWELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHRCYEFYAGVSNTGTFELNNGLVG 390
IP T+H VWLGG +P F LR++W H+GWELRLW D+E FGLEN+ A+DAA N+GEKSDI RYE+L RHGG+YVDVDFLCL + + +F+AG++N G E+NNGL+G
Sbjct: 62 IPHTLHQVWLGGSMPSKFRDLRESWAKLHDGWELRLWGGGDVEDFGLENRAAFDAATNYGEKSDIFRYEILHRHGGIYVDVDFLCLQSLQVMADNLDFFAGLANVGAVEINNGLIG 177
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A6G0WYT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYT2_9STRA) HSP 1 Score: 156 bits (394), Expect = 7.860e-43 Identity = 74/140 (52.86%), Postives = 95/140 (67.86%), Query Frame = 1
Query: 25 TDAPWLIPRTIHHVWLGGKLPRPFARLRDTWRLRHEGWELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHR--CYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKIR 438
+ P +IP+ IH +WLG L F +W+ H WE LWTE +IE + L+N+ AYD A NFGEKSDILRYE+L GGLYVDVDF CL FD LH EFYAG+SNT + E+NN L+GC P+HPI++ +I+ I+
Sbjct: 33 SPGPPVIPKRIHQIWLGPALMDEFHSYIQSWKNHHPDWEYTLWTEREIENWKLQNQAAYDMATNFGEKSDILRYEILETFGGLYVDVDFECLKPFDQLHENPTCEFYAGLSNTRSVEINNALIGCVPNHPILKAVISAIQ 172
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A7V1MPV4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A7V1MPV4_9BACT) HSP 1 Score: 148 bits (374), Expect = 9.900e-40 Identity = 70/148 (47.30%), Postives = 94/148 (63.51%), Query Frame = 1
Query: 43 IPRTIHHVWLGGKLPRPFAR----LRDTWRLRHEGWELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHRCYEFY---AGVSNTGTFELNNGLVGCRPDHPIMR------NLITKIRESW 447
IP+ IH +W+G P PF L+ TW+ H W+ +LWT+AD++ L N+ AY+ A+N+G+KSDILRYE+L ++GGLYVD DF C AFD H C +FY AG+SN G F L N L+GC P HPI++ N+ K SW
Sbjct: 77 IPKIIHQIWVG---PHPFPNKCKVLQKTWKKHHPDWKYKLWTDADVKELDLINEAAYEKAKNYGQKSDILRYEILYKYGGLYVDTDFECFRAFDIFHHCLDFYTGIAGLSNKGAFGLINALIGCAPGHPIIKACIETMNISDKPHSSW 221
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A7S4NT80_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NT80_GUITH) HSP 1 Score: 142 bits (357), Expect = 6.280e-39 Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 1
Query: 43 IPRTIHHVWLGGKLPRPFARLRDTWRLRH---EGWELRLWTEADI-EAFG---LENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDD-LHRCYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKIRESWSPP 456
IPR IHH+W+GGKLP F LRD W L H EGW+ LW + I + F +++ +Y +A N+GEKSDILR EVL R GG+YVDVDF C+ +F D L F+AG+SN G E+NNGL+G P HP+++ + K+ S S P
Sbjct: 6 IPRIIHHIWIGGKLPGKFQSLRDEWILLHPAQEGWKHYLWDDESIAQEFSSNPMDSAGSYASASNYGEKSDILRLEVLNRFGGVYVDVDFKCIRSFHDILETGVAFFAGLSNVGHIEVNNGLIGSAPQHPLLKRCLEKLHSSTSMP 151
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: F0W3M3_9STRA (Surface protein Sur1 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3M3_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.570e-39 Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 43 IPRTIHHVWLGGK-LPRPFARLRDTWRLRHEGWELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHRCYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKI 435
IP IH +WLG +P + +TWR H WE +LWT+ + L+NKE +D A N+GEKSDILRYE+LL+ GG+YVDVDF CL F DL + + F G+SNT ELNNGL+ C +HPI+R L+ +
Sbjct: 79 IPFIIHQIWLGPHPIPAFCLQQMETWRQIHPQWEYKLWTDTQVSTLKLQNKEHFDLAGNYGEKSDILRYEILLQFGGIYVDVDFKCLRLFQDLLQAFSFITGISNTDVVELNNGLIACTRNHPIVRELVASL 210
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A7S4KWQ0_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KWQ0_GUITH) HSP 1 Score: 143 bits (360), Expect = 5.310e-38 Identity = 77/166 (46.39%), Postives = 102/166 (61.45%), Query Frame = 1
Query: 43 IPRTIHHVWLGGKLPRPFARLRDTWRLRH---EGWELRLWTEADI-EAFG---LENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDD-LHRCYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKIRESWSPPPS--IC-----EERSCEGGP 495
IPR IHH+W+GGKLP F LRD W L H EGW+ LW + I + F +++ +Y +A N+GEKSDILR EVL R GG+YVDVDF C+ +F D L F+AG+SN G E+NNGL+G P HP+++ + K+ S S P +C E C+ GP
Sbjct: 6 IPRIIHHIWIGGKLPGKFQSLRDEWILLHPAQEGWKHYLWDDESIAQEFSSNPMDSAGSYASASNYGEKSDILRLEVLNRFGGVYVDVDFKCIRSFHDILETGVAFFAGLSNVGHIEVNNGLIGSAPQHPLLKRCLEKLHSSTSMPSDRLLCALSSGNETICKTGP 171
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Match: A0A485KRR7_9STRA (Aste57867_10970 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRR7_9STRA) HSP 1 Score: 140 bits (353), Expect = 8.230e-38 Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 40 LIPRTIHHVWLGGKLPRPFARLRD---TWRLRHEGWELRLWTEADIEAFGLENKEAYDAARNFGEKSDILRYEVLLRHGGLYVDVDFLCLGAFDDLHR---CYEFYAGVSNTGTFELNNGLVGCRPDHPIMRNLITKI 435
+IP+ IH +WLG P P R+ +W H WE LWTE D+ + L N+ A+DAA N+GEKSDI RYE+L RHGG+YVD+DF CL D +H C FYAG+SNT T E+NN L+G P HPI++ LI I
Sbjct: 22 VIPKRIHQIWLG---PAPLDAFREWMKSWGALHPDWEYTLWTERDLGQWTLTNQMAFDAATNYGEKSDIWRYEILERHGGVYVDIDFECLRPLDAMHEHDGC-SFYAGLSNTNTVEVNNALIGVVPHHPILQALIASI 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58394.13323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58394.13323.1 >prot_H-elongata_contig58394.13323.1 ID=prot_H-elongata_contig58394.13323.1|Name=mRNA_H-elongata_contig58394.13323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MISLRGVSTDAPWLIPRTIHHVWLGGKLPRPFARLRDTWRLRHEGWELRLback to top mRNA from alignment at H-elongata_contig58394:583..1731- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58394.13323.1 ID=mRNA_H-elongata_contig58394.13323.1|Name=mRNA_H-elongata_contig58394.13323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig58394:583..1731- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58394:583..1731- >mRNA_H-elongata_contig58394.13323.1 ID=mRNA_H-elongata_contig58394.13323.1|Name=mRNA_H-elongata_contig58394.13323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig58394:583..1731- (Himanthalia elongata Himel1 dioecious)back to top |