prot_H-elongata_contig58351.13320.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58351.13320.1
Unique Nameprot_H-elongata_contig58351.13320.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length300
Homology
[Close]
BLAST of mRNA_H-elongata_contig58351.13320.1 vs. uniprot
Match: A0A6H5KAJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.940e-19
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 0 
Query:    2 SSSLLSLWLLTFVVFRQGHSQDVLSSCPTEAILCYADEDCAICADQLQTLADSGGVSVNATDCQAFFEDICTAVDTDECDVENELLVDFAQCVSEEEFGCTDFTSCA 108
            ++SLL++W      FR+GHS   +S CP+E +LC AD+DC+ C   L   +D+  ++   TDC   F+ +CT    + CDV N LL D+A CV++E+FGC  F SCA
Sbjct:   12 AASLLAMWC-AINQFREGHSNSAVS-CPSETVLCLADDDCSSCLTALMETSDT--INPVFTDCNVLFDSVCTFAVDNGCDVTNPLLEDYAACVADEDFGCPGFVSCA 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58351.13320.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAJ7_9PHAE8.940e-1942.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..299
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.858

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58351contigH-elongata_contig58351:365..1264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58351.13320.1mRNA_H-elongata_contig58351.13320.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58351 344..2096 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58351.13320.1 ID=prot_H-elongata_contig58351.13320.1|Name=mRNA_H-elongata_contig58351.13320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp
MSSSLLSLWLLTFVVFRQGHSQDVLSSCPTEAILCYADEDCAICADQLQT
LADSGGVSVNATDCQAFFEDICTAVDTDECDVENELLVDFAQCVSEEEFG
CTDFTSCADVVISTPAPAGTPAPIISLAPTVTGVATEMPASVSPTASTAA
PTLTAAVMTTAAPTLTAAVTTVAPTAVPSMSYTTVAPTAVPSMSYTTVAP
TAVPSMSYTSVAPTAVPTMSHTSVSPTAVPTMSTTVAPTPVSRDLSTAEP
TEASTTTEAESESSAGARVSSTTTIATTAALLLGSALLAVSIAEQTCVL*
back to top