mRNA_H-elongata_contig58351.13320.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58351.13320.1
Unique NamemRNA_H-elongata_contig58351.13320.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig58351.13320.1 vs. uniprot
Match: A0A6H5KAJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.080e-18
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   25 SSSLLSLWLLTFVVFRQGHSQDVLSSCPTEAILCYADEDCAICADQLQTLADSGGVSVNATDCQAFFEDICTAVDTDECDVENELLVDFAQCVSEEEFGCTDFTSCA 345
            ++SLL++W      FR+GHS   +S CP+E +LC AD+DC+ C   L   +D+  ++   TDC   F+ +CT    + CDV N LL D+A CV++E+FGC  F SCA
Sbjct:   12 AASLLAMWC-AINQFREGHSNSAVS-CPSETVLCLADDDCSSCLTALMETSDT--INPVFTDCNVLFDSVCTFAVDNGCDVTNPLLEDYAACVADEDFGCPGFVSCA 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58351.13320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAJ7_9PHAE5.080e-1842.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58351contigH-elongata_contig58351:344..2096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1753
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58351.13320.1prot_H-elongata_contig58351.13320.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58351 365..1264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.417289-UTR-H-elongata_contig58351:343..3641622930946.417289-UTR-H-elongata_contig58351:343..364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58351 344..364 +
1691679635.8178236-UTR-H-elongata_contig58351:343..3641691679635.8178236-UTR-H-elongata_contig58351:343..364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58351 344..364 +
1622930946.4414587-UTR-H-elongata_contig58351:1264..20961622930946.4414587-UTR-H-elongata_contig58351:1264..2096Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58351 1265..2096 +
1691679635.8384864-UTR-H-elongata_contig58351:1264..20961691679635.8384864-UTR-H-elongata_contig58351:1264..2096Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58351 1265..2096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.4291425-CDS-H-elongata_contig58351:364..12641622930946.4291425-CDS-H-elongata_contig58351:364..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58351 365..1264 +
1691679635.8282988-CDS-H-elongata_contig58351:364..12641691679635.8282988-CDS-H-elongata_contig58351:364..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58351 365..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58351.13320.1

>prot_H-elongata_contig58351.13320.1 ID=prot_H-elongata_contig58351.13320.1|Name=mRNA_H-elongata_contig58351.13320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp
MSSSLLSLWLLTFVVFRQGHSQDVLSSCPTEAILCYADEDCAICADQLQT
LADSGGVSVNATDCQAFFEDICTAVDTDECDVENELLVDFAQCVSEEEFG
CTDFTSCADVVISTPAPAGTPAPIISLAPTVTGVATEMPASVSPTASTAA
PTLTAAVMTTAAPTLTAAVTTVAPTAVPSMSYTTVAPTAVPSMSYTTVAP
TAVPSMSYTSVAPTAVPTMSHTSVSPTAVPTMSTTVAPTPVSRDLSTAEP
TEASTTTEAESESSAGARVSSTTTIATTAALLLGSALLAVSIAEQTCVL*
back to top

mRNA from alignment at H-elongata_contig58351:344..2096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58351.13320.1 ID=mRNA_H-elongata_contig58351.13320.1|Name=mRNA_H-elongata_contig58351.13320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1753bp|location=Sequence derived from alignment at H-elongata_contig58351:344..2096+ (Himanthalia elongata Himel1 dioecious)
CAGAATCCGGTGGAATTCAGGATGTCGTCTTCGCTGCTGAGCCTTTGGCT
GCTGACCTTCGTGGTGTTCCGGCAGGGTCACTCGCAGGACGTTCTAAGCT
CCTGCCCCACGGAGGCGATCTTGTGCTACGCCGACGAGGACTGCGCGATC
TGCGCCGACCAGCTGCAGACCTTGGCGGACTCCGGCGGTGTTTCCGTGAA
CGCGACAGACTGTCAGGCCTTCTTCGAGGATATCTGCACCGCAGTCGACA
CAGACGAGTGCGACGTCGAGAACGAGCTCCTCGTAGACTTCGCCCAGTGC
GTGTCCGAGGAAGAATTCGGCTGCACCGACTTCACCTCTTGCGCGGATGT
GGTCATAAGTACGCCGGCACCCGCGGGCACCCCTGCTCCCATCATTTCAC
TTGCTCCCACCGTAACTGGCGTGGCGACCGAGATGCCCGCTAGTGTTTCT
CCCACCGCCTCTACCGCAGCTCCCACCCTCACTGCTGCGGTGATGACCAC
CGCGGCTCCCACCCTCACTGCTGCGGTGACCACCGTGGCTCCCACCGCCG
TGCCGTCAATGTCGTACACTACCGTGGCTCCCACCGCCGTGCCGTCAATG
TCGTACACTACCGTGGCTCCCACTGCCGTGCCGTCAATGTCGTACACTTC
CGTAGCTCCCACCGCCGTGCCGACAATGTCACACACTTCCGTATCTCCCA
CCGCCGTGCCAACAATGTCCACTACCGTAGCTCCCACCCCCGTCTCGCGC
GACCTGAGTACCGCGGAACCCACCGAAGCATCTACGACGACGGAAGCCGA
GTCCGAGTCTAGCGCTGGCGCGAGGGTGTCGTCGACCACGACAATTGCTA
CCACAGCCGCCCTGCTTCTGGGCAGCGCCCTGCTGGCGGTCTCGATCGCG
GAGCAGACTTGCGTGCTGTGATTTTCTAAAAGGGTGGAAAAACAAAAGCG
CGCCGGGAAGCGCGAAAGAGCTAGAGATGGGTTCCTCCTGCCTTACTAAA
AAAATATTTTTGTGGTGGGTGAGGAAAAGGGGAAAAAGCGAAAAAGAGCA
CCCCTTCGATGGTGCCGCCCGCTTTTATCTTCCCGACGAGTATATGTTGT
TGCGGTCTGTCTCTTTTGGACGACAAAGCGTTTGGCTTAAATTTGATGGA
AATACGATACACGCGTACATTTGAAAATATCTTACTGGAATGTGTAGCCA
TTTTTCTGTGTCAAGGCCTCTACGGAGGGTGTTTGCATCCTCCTGCATGA
GCTTTCCATATGCTGCAGACAAAAAACGCGGCGATCAAGGTGTTGGGTTG
AGTTTTTGTTATAAATCCGTGGGGGAGCTCGTGAGGCTTTTCTGACTGTT
TGCGCAAAGGCTGGATTTGGGAGGGATCTGATTTGAGTTTTTTTCGTATT
TTCCACATCGTGGTTAGCGAAGCATATACAAGTAGCTTATACATCTTCTC
TTGGGTGATGAGAAATGGTTCTCGATGCTTGCACTCCGTGGGGTGCTGCA
GCGGTCAGTCCTAGACTTTATGAAGGGCTTTTGTTGTTAGCACTACTCCG
TCCATGGCAAGGGAAGGATAATAAGAATGTGCTAAACACGCCGTAGAGTC
TGGAAAATAAAGCATAAGATTTGCCGAAGATGTTTTTAGATGTTCATTTT
AAAATGTAAAGCCCGAGACTCGTCGTGGGCCTGTTAATTCAACAGATAAA
CAACAAACTAAACCTTTTAACTAAGCCTAACTTATGCGAGAGAATTCAAT
AAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig58351:344..2096+

>mRNA_H-elongata_contig58351.13320.1 ID=mRNA_H-elongata_contig58351.13320.1|Name=mRNA_H-elongata_contig58351.13320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig58351:344..2096+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTCTTCGCTGCTGAGCCTTTGGCTGCTGACCTTCGTGGTGTTCCG
GCAGGGTCACTCGCAGGACGTTCTAAGCTCCTGCCCCACGGAGGCGATCT
TGTGCTACGCCGACGAGGACTGCGCGATCTGCGCCGACCAGCTGCAGACC
TTGGCGGACTCCGGCGGTGTTTCCGTGAACGCGACAGACTGTCAGGCCTT
CTTCGAGGATATCTGCACCGCAGTCGACACAGACGAGTGCGACGTCGAGA
ACGAGCTCCTCGTAGACTTCGCCCAGTGCGTGTCCGAGGAAGAATTCGGC
TGCACCGACTTCACCTCTTGCGCGGATGTGGTCATAAGTACGCCGGCACC
CGCGGGCACCCCTGCTCCCATCATTTCACTTGCTCCCACCGTAACTGGCG
TGGCGACCGAGATGCCCGCTAGTGTTTCTCCCACCGCCTCTACCGCAGCT
CCCACCCTCACTGCTGCGGTGATGACCACCGCGGCTCCCACCCTCACTGC
TGCGGTGACCACCGTGGCTCCCACCGCCGTGCCGTCAATGTCGTACACTA
CCGTGGCTCCCACCGCCGTGCCGTCAATGTCGTACACTACCGTGGCTCCC
ACTGCCGTGCCGTCAATGTCGTACACTTCCGTAGCTCCCACCGCCGTGCC
GACAATGTCACACACTTCCGTATCTCCCACCGCCGTGCCAACAATGTCCA
CTACCGTAGCTCCCACCCCCGTCTCGCGCGACCTGAGTACCGCGGAACCC
ACCGAAGCATCTACGACGACGGAAGCCGAGTCCGAGTCTAGCGCTGGCGC
GAGGGTGTCGTCGACCACGACAATTGCTACCACAGCCGCCCTGCTTCTGG
GCAGCGCCCTGCTGGCGGTCTCGATCGCGGAGCAGACTTGCGTGCTGTGA
ATGTCGTCTTCGCTGCTGAGCCTTTGGCTGCTGACCTTCGTGGTGTTCCG
GCAGGGTCACTCGCAGGACGTTCTAAGCTCCTGCCCCACGGAGGCGATCT
TGTGCTACGCCGACGAGGACTGCGCGATCTGCGCCGACCAGCTGCAGACC
TTGGCGGACTCCGGCGGTGTTTCCGTGAACGCGACAGACTGTCAGGCCTT
CTTCGAGGATATCTGCACCGCAGTCGACACAGACGAGTGCGACGTCGAGA
ACGAGCTCCTCGTAGACTTCGCCCAGTGCGTGTCCGAGGAAGAATTCGGC
TGCACCGACTTCACCTCTTGCGCGGATGTGGTCATAAGTACGCCGGCACC
CGCGGGCACCCCTGCTCCCATCATTTCACTTGCTCCCACCGTAACTGGCG
TGGCGACCGAGATGCCCGCTAGTGTTTCTCCCACCGCCTCTACCGCAGCT
CCCACCCTCACTGCTGCGGTGATGACCACCGCGGCTCCCACCCTCACTGC
TGCGGTGACCACCGTGGCTCCCACCGCCGTGCCGTCAATGTCGTACACTA
CCGTGGCTCCCACCGCCGTGCCGTCAATGTCGTACACTACCGTGGCTCCC
ACTGCCGTGCCGTCAATGTCGTACACTTCCGTAGCTCCCACCGCCGTGCC
GACAATGTCACACACTTCCGTATCTCCCACCGCCGTGCCAACAATGTCCA
CTACCGTAGCTCCCACCCCCGTCTCGCGCGACCTGAGTACCGCGGAACCC
ACCGAAGCATCTACGACGACGGAAGCCGAGTCCGAGTCTAGCGCTGGCGC
GAGGGTGTCGTCGACCACGACAATTGCTACCACAGCCGCCCTGCTTCTGG
GCAGCGCCCTGCTGGCGGTCTCGATCGCGGAGCAGACTTGCGTGCTGTGA
back to top