prot_H-elongata_contig58347.13319.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58347.13319.1
Unique Nameprot_H-elongata_contig58347.13319.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 6.050e-56
Identity = 93/120 (77.50%), Postives = 110/120 (91.67%), Query Frame = 0
Query:    1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            +TGLLYSHPLAQ++LAPSLLLLYGDVEHTGF +KLTHRFYIAAVL+YLWR+K+HRSTFRRI+QDTGKFVRFANGLMNESNSLV+SVME+LP+VR +QLQMR+   W ++ E QR +I +R
Sbjct:  611 HTGLLYSHPLAQKHLAPSLLLLYGDVEHTGFYEKLTHRFYIAAVLKYLWRSKEHRSTFRRISQDTGKFVRFANGLMNESNSLVASVMEKLPEVRAVQLQMRDPAQWGAMTETQRNEIAER 730          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A835Z369_9STRA (Ubiquitin elongating factor core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z369_9STRA)

HSP 1 Score: 171 bits (432), Expect = 5.350e-47
Identity = 82/120 (68.33%), Postives = 103/120 (85.83%), Query Frame = 0
Query:    1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            +T LLYSHPLAQ++LAPSLLLLYGDVEHTGF DKLTHR+ IA VL+YLWR+ DHRSTF+RI+QDT +FVRFANGLMNE+NSLV++VME+L ++R IQ+Q R+   W +L E +R +I +R
Sbjct:  519 HTALLYSHPLAQKHLAPSLLLLYGDVEHTGFYDKLTHRYNIALVLKYLWRSPDHRSTFQRISQDTQQFVRFANGLMNETNSLVTNVMEKLLEIRTIQVQQRDGATWGALPEERRNEIEER 638          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: W7TVR0_9STRA (Ubiquitin conjugation factor e4 b isoform 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVR0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.170e-44
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 0
Query:    1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            YT  L ++PLAQ  LAP+LLLLYGDVEHTGF DKL HRF+IAAVL++LWR+ +HR TFRRI+ DT +F  FANGLMNE+N+LV+SVME+LP++R +QLQM++   W ++ E  R +I++R
Sbjct:  149 YTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMER 268          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A4D9D5M9_9STRA (U-box domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.150e-43
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 0
Query:    1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            YT  L ++PLAQ  LAP+LLLLYGDVEHTGF DKL HRF+IAAVL++LWR+ +HR TFRRI+ DT +F  FANGLMNE+N+LV+SVME+LP++R +QLQM++   W ++ E  R +I++R
Sbjct:  696 YTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMER 815          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S3YK06_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK06_HETAK)

HSP 1 Score: 139 bits (350), Expect = 7.340e-37
Identity = 66/119 (55.46%), Postives = 92/119 (77.31%), Query Frame = 0
Query:    3 GLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWR-NKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
             LL +HP  + +LAP+LLLLYGDVEHTGF +KL HR++IAA+L+YLW     HR +FRRIA    +FVRFANGLMNE+N+LV+SVME+LP++R  QL+M+N+  W  L + ++ ++ +R
Sbjct:  245 ALLAAHPECREHLAPALLLLYGDVEHTGFYEKLGHRYHIAALLKYLWALGPAHRPSFRRIAASADRFVRFANGLMNETNALVASVMEKLPEIRQAQLRMKNVVEWLGLTDQEKQEVRER 363          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S3LCA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCA5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.340e-36
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 0
Query:    9 PLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            P AQ  LAPSLLLLYG+VEHTG+ DK+ HR  I+++++YLW + +HR  FRRI Q+   F++FANG+MNE+N+L+++VM++LP++R  Q +M+N   W  L+E Q+  I  R
Sbjct:   11 PSAQETLAPSLLLLYGEVEHTGYYDKMAHRARISSIIKYLWESTEHRPAFRRITQNRESFIKFANGIMNETNTLIATVMQKLPEIREAQSKMKNHQEWGQLSEEQQKQITDR 122          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S4QYQ6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYQ6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.630e-36
Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 0
Query:    5 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            L S   AQ  LAPSLLLLYG+VEHTG+ +K++HR +IAA+L+YLW + +HR+ FRRI Q+   F++FANG+MNE+NSL++SVME+LP++R +Q+QM N   W +L E QR  I  R
Sbjct:  530 LLSDASAQETLAPSLLLLYGEVEHTGYYEKMSHRAHIAALLKYLWESTEHRNAFRRITQNKESFIKFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQQWAALPEEQRETITSR 645          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A1Z5JH47_FISSO (Ubiquitin conjugation factor E4 B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH47_FISSO)

HSP 1 Score: 135 bits (340), Expect = 1.760e-34
Identity = 61/116 (52.59%), Postives = 89/116 (76.72%), Query Frame = 0
Query:    5 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            L S P AQ  LAPSLLLLYG+VEHTG+ DK++HR  IA++++YLW + +HRS FRRI Q+   F++FANG+MNE+N+L+++VM++LP++R  Q QM+N+  W  L+E ++  I  R
Sbjct:  746 LLSDPAAQESLAPSLLLLYGEVEHTGYYDKMSHRAKIASLIKYLWESAEHRSAFRRITQNKESFIKFANGIMNETNTLIATVMQKLPEIRSAQEQMKNVEEWGRLSEEEQSQITSR 861          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7R9Z2J3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z2J3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.080e-34
Identity = 63/116 (54.31%), Postives = 88/116 (75.86%), Query Frame = 0
Query:    5 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            L S   AQ+ LAPSLLLLYG+VE TG+ D++ +R +IA++LRYLW + +H++ FR+IA D   FV FANG+MNE+NSL++SVME+LP++R +Q+QM N   W +L+E QR  I  R
Sbjct:  101 LLSDASAQQTLAPSLLLLYGEVEQTGYYDRMKYRAHIASLLRYLWESAEHKAAFRKIATDRDSFVTFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQEWAALSEEQRETISSR 216          
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S2A739_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A739_TRICV)

HSP 1 Score: 131 bits (330), Expect = 2.640e-33
Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 0
Query:    5 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 120
            L S P A+  LAPSLLLLYG+VE TG+ D++ +R +IAA+L+YLW + +HR  FR+IA D   F++FANG+MNE+NSL++SVME+LP++R +Q+QM N   W +L E +R  I  R
Sbjct:  298 LLSDPSARDTLAPSLLLLYGEVEQTGYYDRMRYRAHIAALLKYLWESGEHRGAFRKIAADKDSFIKFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQEWAALGEERRETISGR 413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU34_ECTSI6.050e-5677.50U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z369_9STRA5.350e-4768.33Ubiquitin elongating factor core-domain-containing... [more]
W7TVR0_9STRA2.170e-4461.67Ubiquitin conjugation factor e4 b isoform 2 n=1 Ta... [more]
A0A4D9D5M9_9STRA4.150e-4361.67U-box domain-containing protein n=3 Tax=Monodopsid... [more]
A0A7S3YK06_HETAK7.340e-3755.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3LCA5_9STRA2.340e-3650.89Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S4QYQ6_9STRA5.630e-3656.03Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JH47_FISSO1.760e-3452.59Ubiquitin conjugation factor E4 B n=2 Tax=Fistulif... [more]
A0A7R9Z2J3_9STRA2.080e-3454.31Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2A739_TRICV2.640e-3353.45Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019474Ubiquitin conjugation factor E4, corePFAMPF10408Ufd2P_corecoord: 4..114
e-value: 2.9E-29
score: 102.2
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 3..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58347contigH-elongata_contig58347:234..1428 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58347.13319.1mRNA_H-elongata_contig58347.13319.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58347 234..1428 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58347.13319.1 ID=prot_H-elongata_contig58347.13319.1|Name=mRNA_H-elongata_contig58347.13319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWR
NKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQM
RNLGLWTSLAENQRVDIIQR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019474Ub_conjug_fac_E4_core