mRNA_H-elongata_contig58347.13319.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI) HSP 1 Score: 196 bits (498), Expect = 6.050e-56 Identity = 93/120 (77.50%), Postives = 110/120 (91.67%), Query Frame = 1
Query: 1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
+TGLLYSHPLAQ++LAPSLLLLYGDVEHTGF +KLTHRFYIAAVL+YLWR+K+HRSTFRRI+QDTGKFVRFANGLMNESNSLV+SVME+LP+VR +QLQMR+ W ++ E QR +I +R
Sbjct: 611 HTGLLYSHPLAQKHLAPSLLLLYGDVEHTGFYEKLTHRFYIAAVLKYLWRSKEHRSTFRRISQDTGKFVRFANGLMNESNSLVASVMEKLPEVRAVQLQMRDPAQWGAMTETQRNEIAER 730
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A835Z369_9STRA (Ubiquitin elongating factor core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z369_9STRA) HSP 1 Score: 171 bits (432), Expect = 5.350e-47 Identity = 82/120 (68.33%), Postives = 103/120 (85.83%), Query Frame = 1
Query: 1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
+T LLYSHPLAQ++LAPSLLLLYGDVEHTGF DKLTHR+ IA VL+YLWR+ DHRSTF+RI+QDT +FVRFANGLMNE+NSLV++VME+L ++R IQ+Q R+ W +L E +R +I +R
Sbjct: 519 HTALLYSHPLAQKHLAPSLLLLYGDVEHTGFYDKLTHRYNIALVLKYLWRSPDHRSTFQRISQDTQQFVRFANGLMNETNSLVTNVMEKLLEIRTIQVQQRDGATWGALPEERRNEIEER 638
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: W7TVR0_9STRA (Ubiquitin conjugation factor e4 b isoform 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVR0_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.170e-44 Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 1
Query: 1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
YT L ++PLAQ LAP+LLLLYGDVEHTGF DKL HRF+IAAVL++LWR+ +HR TFRRI+ DT +F FANGLMNE+N+LV+SVME+LP++R +QLQM++ W ++ E R +I++R
Sbjct: 149 YTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMER 268
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A4D9D5M9_9STRA (U-box domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M9_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.150e-43 Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 1
Query: 1 YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
YT L ++PLAQ LAP+LLLLYGDVEHTGF DKL HRF+IAAVL++LWR+ +HR TFRRI+ DT +F FANGLMNE+N+LV+SVME+LP++R +QLQM++ W ++ E R +I++R
Sbjct: 696 YTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMER 815
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S3YK06_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK06_HETAK) HSP 1 Score: 139 bits (350), Expect = 7.340e-37 Identity = 66/119 (55.46%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 7 GLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWR-NKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
LL +HP + +LAP+LLLLYGDVEHTGF +KL HR++IAA+L+YLW HR +FRRIA +FVRFANGLMNE+N+LV+SVME+LP++R QL+M+N+ W L + ++ ++ +R
Sbjct: 245 ALLAAHPECREHLAPALLLLYGDVEHTGFYEKLGHRYHIAALLKYLWALGPAHRPSFRRIAASADRFVRFANGLMNETNALVASVMEKLPEIRQAQLRMKNVVEWLGLTDQEKQEVRER 363
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S3LCA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCA5_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.340e-36 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 25 PLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
P AQ LAPSLLLLYG+VEHTG+ DK+ HR I+++++YLW + +HR FRRI Q+ F++FANG+MNE+N+L+++VM++LP++R Q +M+N W L+E Q+ I R
Sbjct: 11 PSAQETLAPSLLLLYGEVEHTGYYDKMAHRARISSIIKYLWESTEHRPAFRRITQNRESFIKFANGIMNETNTLIATVMQKLPEIREAQSKMKNHQEWGQLSEEQQKQITDR 122
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S4QYQ6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYQ6_9STRA) HSP 1 Score: 139 bits (351), Expect = 5.630e-36 Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 1
Query: 13 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
L S AQ LAPSLLLLYG+VEHTG+ +K++HR +IAA+L+YLW + +HR+ FRRI Q+ F++FANG+MNE+NSL++SVME+LP++R +Q+QM N W +L E QR I R
Sbjct: 530 LLSDASAQETLAPSLLLLYGEVEHTGYYEKMSHRAHIAALLKYLWESTEHRNAFRRITQNKESFIKFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQQWAALPEEQRETITSR 645
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A1Z5JH47_FISSO (Ubiquitin conjugation factor E4 B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH47_FISSO) HSP 1 Score: 135 bits (340), Expect = 1.760e-34 Identity = 61/116 (52.59%), Postives = 89/116 (76.72%), Query Frame = 1
Query: 13 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
L S P AQ LAPSLLLLYG+VEHTG+ DK++HR IA++++YLW + +HRS FRRI Q+ F++FANG+MNE+N+L+++VM++LP++R Q QM+N+ W L+E ++ I R
Sbjct: 746 LLSDPAAQESLAPSLLLLYGEVEHTGYYDKMSHRAKIASLIKYLWESAEHRSAFRRITQNKESFIKFANGIMNETNTLIATVMQKLPEIRSAQEQMKNVEEWGRLSEEEQSQITSR 861
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7R9Z2J3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z2J3_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.080e-34 Identity = 63/116 (54.31%), Postives = 88/116 (75.86%), Query Frame = 1
Query: 13 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
L S AQ+ LAPSLLLLYG+VE TG+ D++ +R +IA++LRYLW + +H++ FR+IA D FV FANG+MNE+NSL++SVME+LP++R +Q+QM N W +L+E QR I R
Sbjct: 101 LLSDASAQQTLAPSLLLLYGEVEQTGYYDRMKYRAHIASLLRYLWESAEHKAAFRKIATDRDSFVTFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQEWAALSEEQRETISSR 216
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Match: A0A7S2A739_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A739_TRICV) HSP 1 Score: 131 bits (330), Expect = 2.640e-33 Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 13 LYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRNKDHRSTFRRIAQDTGKFVRFANGLMNESNSLVSSVMERLPQVRVIQLQMRNLGLWTSLAENQRVDIIQR 360
L S P A+ LAPSLLLLYG+VE TG+ D++ +R +IAA+L+YLW + +HR FR+IA D F++FANG+MNE+NSL++SVME+LP++R +Q+QM N W +L E +R I R
Sbjct: 298 LLSDPSARDTLAPSLLLLYGEVEQTGYYDRMRYRAHIAALLKYLWESGEHRGAFRKIAADKDSFIKFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQEWAALGEERRETISGR 413 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58347.13319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58347.13319.1 >prot_H-elongata_contig58347.13319.1 ID=prot_H-elongata_contig58347.13319.1|Name=mRNA_H-elongata_contig58347.13319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp YTGLLYSHPLAQRYLAPSLLLLYGDVEHTGFEDKLTHRFYIAAVLRYLWRback to top mRNA from alignment at H-elongata_contig58347:234..1428- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58347.13319.1 ID=mRNA_H-elongata_contig58347.13319.1|Name=mRNA_H-elongata_contig58347.13319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1195bp|location=Sequence derived from alignment at H-elongata_contig58347:234..1428- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58347:234..1428- >mRNA_H-elongata_contig58347.13319.1 ID=mRNA_H-elongata_contig58347.13319.1|Name=mRNA_H-elongata_contig58347.13319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig58347:234..1428- (Himanthalia elongata Himel1 dioecious)back to top |