mRNA_H-elongata_contig58341.13317.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58341.13317.1
Unique NamemRNA_H-elongata_contig58341.13317.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58341.13317.1 vs. uniprot
Match: D7G427_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G427_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.670e-25
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:   70 SLRPGMLDEGCESALRKAGKLRGCVDEAYGALRDLHCEVG-------------VKAFGEEKLNFDPSLQQTNGLDARIAGTASAP 285
            SLRP MLDEGCE+ LR+AGKLRGCVDEAYGALRDL CEVG             V AFGEEK NF+PSLQ+T  L  RI G+A+AP
Sbjct:  479 SLRPTMLDEGCEAVLREAGKLRGCVDEAYGALRDLQCEVGLVTMGESGKVQIGVTAFGEEKPNFNPSLQETKDLGERIEGSATAP 563
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BLAST of mRNA_H-elongata_contig58341.13317.1 vs. uniprot
Match: A0A7S3MBM2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBM2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.860e-16
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:   28 QACLCIRNIAARGPSLRPGMLDEGCESALRKAGKLRGCVDEAYGALRDLHCEVGVKAFGEE--------------KLNFDPSLQQTNGLDARIAGTASAPL 288
            Q CL +RNIAARGP LRP +LD G E  LR AG++   VDEAYGALRDL CEV     G +              KL F+P   + + +  R+   A APL
Sbjct:  407 QGCLTVRNIAARGPELRPVLLDAGFEDLLRAAGRIMDVVDEAYGALRDLGCEVHYVKVGADGRVEPVYEQFGAAAKLQFNPIYDEDDYITTRVQEEARAPL 507
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58341.13317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G427_ECTSI3.670e-2565.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3MBM2_9STRA1.860e-1645.54Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58341contigH-elongata_contig58341:2228..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.9e-21
Seed eggNOG ortholog2880.D7G427
EggNOG free text desc.hematopoietic progenitor cell differentiation
EggNOG OGsKOG4199@1,KOG4199@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.1531131-CDS-H-elongata_contig58341:2227..23531622930946.1531131-CDS-H-elongata_contig58341:2227..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58341 2228..2353 -
1691679635.724756-CDS-H-elongata_contig58341:2227..23531691679635.724756-CDS-H-elongata_contig58341:2227..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58341 2228..2353 -
1622930946.1758733-CDS-H-elongata_contig58341:3155..33381622930946.1758733-CDS-H-elongata_contig58341:3155..3338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58341 3156..3338 -
1691679635.737538-CDS-H-elongata_contig58341:3155..33381691679635.737538-CDS-H-elongata_contig58341:3155..3338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58341 3156..3338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58341.13317.1prot_H-elongata_contig58341.13317.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58341 2228..3338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58341.13317.1

>prot_H-elongata_contig58341.13317.1 ID=prot_H-elongata_contig58341.13317.1|Name=mRNA_H-elongata_contig58341.13317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
SYPATPRKFQACLCIRNIAARGPSLRPGMLDEGCESALRKAGKLRGCVDE
AYGALRDLHCEVGVKAFGEEKLNFDPSLQQTNGLDARIAGTASAPLGHVG
TL*
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mRNA from alignment at H-elongata_contig58341:2228..3338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58341.13317.1 ID=mRNA_H-elongata_contig58341.13317.1|Name=mRNA_H-elongata_contig58341.13317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-elongata_contig58341:2228..3338- (Himanthalia elongata Himel1 dioecious)
TCGTATCCGGCGACGCCACGTAAATTTCAGGCATGTCTGTGCATTCGCAA
CATCGCCGCGCGCGGGCCAAGTCTTCGTCCAGGCATGCTGGACGAAGGGT
GCGAATCTGCCTTGAGAAAGGCGGGCAAGCTTAGGGGCTGTGTCGACGAG
GCTTACGGGGCTCTGCGCGACCTGCATTGCGAGGTATTGCACGAATATTG
TTGTGGTTGTTATGTGTAGGCTTTTGCTCCGATTCGTGCGGTGAAAGGAA
AATTGAGAGGGGGAGTATTTGTGACCAGTATCGGTTCATTTTGAAATCGG
AAAATCCCCATAGATGCTAATAAGAGCATAGTTCGATTTACTTGAATTGA
GTGTCATGCCTACTGGGAGCTGTGTTTTTCCCGGCTCTTTTCGAGGAAGC
TCAGCGGTTAGTACTTGAAAATATATTAGAATTGTTGTATTATATTATAT
TTTTTATCATTGTGTGTCGTATAATATGCTGTATTTATTAATAATATTAA
TTACTTTGTATCGTGATGTATTATATTGTGCATGACATTATTTTCCATCA
TACAACGAACATAAAATAGGAGTAAGGAATATCAAAATGGACACAGGTAG
GTAATGCCATAAGCGCCAAACAAGAGCACAGGTAGGGAATGACGAGTCTG
GCAGCAGAGGGACTGTACCCCCCCCCCCCAATACACAGAGACAGATAAAC
ACTAGCAGACAACCCTAAGGAGATTTGCCACGATCCTTTTCGGCCATTAA
CGCCAAGAGGAAACACGCTCAGACTAGGACACGGACTAGCCTCTTCAAGG
GCGACATTCGGCTCCGCCCGCCGTAAACTGTCCTTAGATGATCGATTTCC
CAGCGTACACTGTTTTGATGTGACTCGCCCACTTTCGACTTGCTCTGTTG
TTTGCCGGGACCTTTCTTTCTTCACCTGCTCTGTCGTCTTCCGCAGGTCA
AGTTGATGTCCATGAGCGAGGGCGGGGAGTTGCAGGTCGGGGTGAAGGCT
TTCGGAGAGGAGAAGCTTAATTTCGATCCGTCCCTCCAACAGACCAACGG
TCTCGACGCGCGCATTGCCGGCACCGCTTCTGCCCCTCTTGGACACGTGG
GCACTCTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig58341:2228..3338-

>mRNA_H-elongata_contig58341.13317.1 ID=mRNA_H-elongata_contig58341.13317.1|Name=mRNA_H-elongata_contig58341.13317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig58341:2228..3338- (Himanthalia elongata Himel1 dioecious)
TCGTATCCGGCGACGCCACGTAAATTTCAGGCATGTCTGTGCATTCGCAA
CATCGCCGCGCGCGGGCCAAGTCTTCGTCCAGGCATGCTGGACGAAGGGT
GCGAATCTGCCTTGAGAAAGGCGGGCAAGCTTAGGGGCTGTGTCGACGAG
GCTTACGGGGCTCTGCGCGACCTGCATTGCGAGTCGTATCCGGCGACGCC
ACGTAAATTTCAGGCATGTCTGTGCATTCGCAACATCGCCGCGCGCGGGC
CAAGTCTTCGTCCAGGCATGCTGGACGAAGGGTGCGAATCTGCCTTGAGA
AAGGCGGGCAAGCTTAGGGGCTGTGTCGACGAGGCTTACGGGGCTCTGCG
CGACCTGCATTGCGAGGTCGGGGTGAAGGCTTTCGGAGAGGAGAAGCTTA
ATTTCGATCCGTCCCTCCAACAGACCAACGGTCTCGACGCGCGCATTGCC
GGCACCGCTTCTGCCCCTCTTGGACACGTGGGCACTCTATGAGTCGGGGT
GAAGGCTTTCGGAGAGGAGAAGCTTAATTTCGATCCGTCCCTCCAACAGA
CCAACGGTCTCGACGCGCGCATTGCCGGCACCGCTTCTGCCCCTCTTGGA
CACGTGGGCACTCTATGA
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