mRNA_H-elongata_contig58325.13313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58325.13313.1
Unique NamemRNA_H-elongata_contig58325.13313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 5.310e-116
Identity = 203/293 (69.28%), Postives = 238/293 (81.23%), Query Frame = 1
Query:    1 SAIFLFSRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            S +F+ SR F  R+VYV++L   LSYR V++KAC S+  ATS   +  TP+  +L + +A     VAR V SPGSAVLIFVPGMA+IL IM LFELISSA V YKVIPFHS+LPKEE+MSAF P  +GVVKVVVATNSAESSITLPDVDNVICLGSCK+M+FD +T R TLTPVWIS+ASAVQRAG RTGRVRPGTVY+LYSR MG E+M+EHG  EI RLPLD+L+L+LKNM+  SPV+P+LKST+EPP++ SV RSLESL+ MGF +S DDD VLTDTG F SGLGVDL L
Sbjct: 1039 SPLFVGSRRFPVRQVYVNELAQRLSYRRVLKKACESIELATSDATARVTPKVLSLQTNMAVQ---VARGVASPGSAVLIFVPGMATILEIMNLFELISSAHVTYKVIPFHSDLPKEEVMSAFGPVGEGVVKVVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAG-RTGRVRPGTVYKLYSRAMGTEIMSEHGMSEILRLPLDALILDLKNMMPGSPVIPILKSTVEPPDLQSVHRSLESLHAMGFTTSPDDDGVLTDTGRFASGLGVDLEL 1327          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A7S2UD67_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD67_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.150e-71
Identity = 133/287 (46.34%), Postives = 185/287 (64.46%), Query Frame = 1
Query:   19 SRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            ++ F   E YV+DL+  +       +A   + Q         TP + +L+ ++      +A +VGS GS+VLIFVPGMA I++I +L E +    + +   P H ++P E+ + AFEPA+ G VKV++ATNSAESSITLPDVD+VICLG CKQ+ ++  + R  L P WISKASA QRAG RTGRVRPGTVYRLY+R   E  M+     E+ R+PLDS++L L +ML    V+P+L   LEPPN++++ RS +SLY+  F++S DD   +T  G  V GLG+DL L
Sbjct:  132 AKRFPIEEFYVEDLDHHIHLPSKQLEAANVIYQFCEKNYCNTTPPS-HLVEKMHGLAVQIALSVGSNGSSVLIFVPGMADIVSITDLVEKVEVHGIAFTCFPIHGDIPFEDQLQAFEPAEPGQVKVIIATNSAESSITLPDVDHVICLGLCKQITYNATSHRQILLPTWISKASATQRAG-RTGRVRPGTVYRLYARNTFEHYMDSFEPGEMSRIPLDSVILNLADMLKEE-VIPILLDCLEPPNISNIDRSFQSLYDSNFITSPDDGGEITKLGSLVVGLGIDLTL 415          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: B5Y583_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y583_PHATC)

HSP 1 Score: 227 bits (579), Expect = 7.960e-64
Identity = 124/287 (43.21%), Postives = 184/287 (64.11%), Query Frame = 1
Query:   19 SRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            +R F  +EV+++DL++++++     K    L    + +     P   + + ++ +    +A  VG PGS+VLIFVPGM  I+AI EL E +    V +   P HS++P E+ M  F+   +  VK+++ATN+AESS+TLPDVD+VICLG CKQ+++++ + R  L P WISKASA QRAG RTGR+RPGTVYR+Y+R +    M++    E+ R+PLDS++L LK ML +  V  VL   LEPPN+ ++ RS +SLY   F++S + D  +T  G FV  +GVDL L
Sbjct:  697 ARRFPVKEVFLEDLQEQVAFSQKEEKTVNQLASECNKMKCAKPPSL-SYMEKIFSLVSHIAMFVGRPGSSVLIFVPGMNEIVAITELVEQLFKPGVRFTCFPIHSDIPFEDQMIVFDATAEDEVKIIIATNAAESSVTLPDVDHVICLGLCKQIVYNEASHRQILMPTWISKASATQRAG-RTGRLRPGTVYRMYTREVYRHYMDDFEPGEMVRIPLDSVILMLKEMLSDEDVTKVLLDCLEPPNIATIDRSFQSLYKCRFITSAEGDCEITSLGSFVLAMGVDLLL 981          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A7S4MMP8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMP8_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.900e-62
Identity = 136/293 (46.42%), Postives = 184/293 (62.80%), Query Frame = 1
Query:    7 IFLFSRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSI--LDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            IF+ +R F  +E +V+DL   L          +SL +A       + P     N+L  LA     +  +VG  GS+VLIFVPGMA I AI E  E ++   V +  +P HS++P EE M AF+P   G VKV++ATN+AESS+TLPDVD+VICLG  KQ++++  + R  LTP WIS+ASA QRAG RTGRVR G VYRLYSR    + M+     E+ R+PLDS++L L++ML N  V P+L + LEPPN+T+++RS ESLY+  F+S  +D   +T  G     LGVDL L
Sbjct:  848 IFVGARRFPIKEYFVEDLAQLLHLGPREAMNASSLYEACEKQRCRTAPPNSQMNMLYGLATQ---ITLSVGRHGSSVLIFVPGMADIEAITENIEELNVPGVAFTCLPIHSDVPFEEQMQAFDPPGFGEVKVILATNAAESSVTLPDVDHVICLGLAKQIIYNRASHRQMLTPCWISRASATQRAG-RTGRVREGNVYRLYSRNTFSQYMDPFETGEMLRIPLDSVILSLRDML-NEEVTPMLLNCLEPPNLTTIERSFESLYDHKFISEPNDQGEITSLGSLAVSLGVDLTL 1135          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A1Z5JF36_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF36_FISSO)

HSP 1 Score: 221 bits (563), Expect = 1.080e-61
Identity = 121/290 (41.72%), Postives = 189/290 (65.17%), Query Frame = 1
Query:   19 SRLFRSREVYVDDLEDELSYRVVMR--KACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVP-VLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            ++ F  +E Y++D  D   +++  R  K   +L+           P   N++ ++ +    +A ++G PGS+VLIFVPGM  I++I EL E +   DV++   P HS++P E+ M  F P   G +K+++ATN+AESS+TLPD D+VICLG CKQ++++  + R  L P WIS+ASA QRAG RT RVRPGTVYR+Y+R + E  M+E    E++R+PLDS++L LK ++ +   V  +L   LEPP+M++++RS +SL+   F++  DD+  +T+ G+FV+ LG+DL L
Sbjct:  693 AKRFPLKEYYLEDFLDPKQFKLPPREKKTVDALIANCKTTKCRAAPS-YNVMEKVFSFVTYLATSLGQPGSSVLIFVPGMNEIVSITELVEQVYVPDVVFTCFPIHSDIPFEDQMEVFAPPKPGEIKIMIATNAAESSVTLPDCDHVICLGLCKQIVYNQLSHRQMLLPTWISRASATQRAG-RTSRVRPGTVYRMYTRDIFERHMDEFEPGEMRRIPLDSVILMLKQIVESEESVSKILSECLEPPDMSTIERSYDSLHKSHFLTQPDDEGTITNLGNFVAALGIDLTL 980          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A7S2L2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B3_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.210e-61
Identity = 131/293 (44.71%), Postives = 182/293 (62.12%), Query Frame = 1
Query:   22 RLFRSREVYVDDLEDELS-------YRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            R F   E +V+DLE +LS       Y   +   CA      S   + P    ++ +  LA+    +  +VG  GS+VLIFV GM+ I +I EL E ++  DV +   P HS++P EE M AFEP  +G VKVV+ATN+AESS+TLPDVD+VIC+G CKQ++++  + R  L P WIS+ASA QRAG RTGRVR G VYRLYSR    E  +     EI R PLDS++L L++ML N PV  +L   LE P++++++RS +SL+   F+S  +D+  +T  G+ V  LG+DL L
Sbjct:  501 RRFPINEYFVEDLESQLSLSRKHAQYSQDIHDECAK-----SRCSAAPPDAIKDKMYHLASQ---ITASVGQHGSSVLIFVAGMSDIQSISELIERLNVRDVTFTCFPIHSDIPFEEQMEAFEPPSEGEVKVVIATNAAESSVTLPDVDHVICMGLCKQIVYNKSSHRQQLIPTWISRASATQRAG-RTGRVRNGNVYRLYSRDAYSEYFDPFEAGEILRSPLDSVILNLRDML-NEPVTEILLECLEAPDISTIERSFQSLHASNFISQPNDEGEITSLGNLVVALGIDLKL 783          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A1E7ENH0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH0_9STRA)

HSP 1 Score: 219 bits (557), Expect = 6.880e-61
Identity = 126/286 (44.06%), Postives = 177/286 (61.89%), Query Frame = 1
Query:   22 RLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            R F   E +++DL  +        KA +++ +          P++  + +R A     +A  VG PGS+VLIFVP M  I++I E  E      + Y   P H ++P EE M+AF   ++  VKV++ATN+AESS+TLP VD+VICLG CKQ++++  + R  LTP WIS+ASA QRAG RTGRVRPG VYRLY+RR  E  M E    E+ R+PLDS++L LK +L +  V+P     LEPP + ++ RS +SL++ GF++  DD + +T  G FVS LGVDL L
Sbjct:  481 RTFPITEYFIEDLS-QFGLPSQEAKAASAIRKEIESKKCVTAPKSAEISNRFALTAR-LATIVGEPGSSVLIFVPRMGEIVSITECIESFHMTGIRYTCFPIHGDIPFEEQMNAFNDPEEDEVKVIIATNAAESSVTLPAVDHVICLGLCKQIIYNQASHRQMLTPAWISRASATQRAG-RTGRVRPGNVYRLYTRRAYENYMEEFEPGEMLRIPLDSVILLLKQIL-HEEVIPAFMDCLEPPPLDTISRSFQSLHHWGFITEADDKADITSLGSFVSSLGVDLSL 762          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC)

HSP 1 Score: 218 bits (556), Expect = 9.500e-61
Identity = 125/289 (43.25%), Postives = 184/289 (63.67%), Query Frame = 1
Query:   19 SRLFRSREVYVDDLEDELSYRVVMRKACASLVQ--ATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            +R F  +E +V++L   L       +    + +    S     P+    + L  LAA+   +  +VG  GS+VLIFVPGM+ I AI +  + ++   V +  +P HS++P EE M+AFEP  +G VKV++ATN+AESS+TLPDVD+VICLG CKQ+M+++++ R  L+  WIS+ASA QRAG RTGRVRPG VYRLYSR   +  M+ +   E+ R+PLD ++L L++M+ N  V P+L   LEPP++T+++RS ESL+   F++   D   +T  G  V  LG+DL L
Sbjct:  845 ARRFPIKEYFVEELASALYLGPRDARLATDIYKDCERSKAQHAPSNPTMDKLHNLAAS---ITASVGGHGSSVLIFVPGMSDIEAISDRVDCLNVPGVEFVCLPIHSDVPFEEQMAAFEPPGEGEVKVIIATNAAESSVTLPDVDHVICLGLCKQIMYNNQSHRQMLSSTWISRASATQRAG-RTGRVRPGNVYRLYSRNCFKHYMDPYESGEMVRIPLDQVILSLRDMM-NEAVTPILLDCLEPPDVTNIERSFESLHTSNFITDASDQGEITSLGGLVVALGIDLAL 1128          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A448ZQI2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQI2_9STRA)

HSP 1 Score: 216 bits (551), Expect = 4.460e-60
Identity = 117/228 (51.32%), Postives = 156/228 (68.42%), Query Frame = 1
Query:  196 VARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
            +A  VG PGS+VLIFVPGMA I+AI E  E   +  V Y   P H ++P E+ M AF       VK+++ATN+AESS+TLP+VD+VICLG C+Q++++  + R  LTP WIS+ASA QRAG RTGRVRPG VYRLY+RR      +E    E+ R+PLDS++L LK +L +  VVPV    LEPP + ++ RS +SLY+  F++  DD++ +T  G FVS LGVDL L
Sbjct:  786 LATLVGIPGSSVLIFVPGMAEIIAISECIEGFHTPGVRYTCFPIHGDIPFEDQMEAFHAPAKDEVKIIIATNAAESSVTLPNVDHVICLGLCRQIIYNQASHRQMLTPAWISQASAKQRAG-RTGRVRPGNVYRLYTRRAHNNYFDEFEPGEMVRIPLDSVILMLKQIL-HEEVVPVFMDCLEPPPLDTIDRSFQSLYHWNFITEPDDEADITSLGSFVSALGVDLSL 1011          
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A3P3YNW4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YNW4_PLABS)

HSP 1 Score: 192 bits (487), Expect = 1.600e-51
Identity = 115/237 (48.52%), Postives = 154/237 (64.98%), Query Frame = 1
Query:  163 LLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDL 873
            +L RLAAA  P  R    P SAVLIFV GM+ IL + E  E +S+  + YKV+P HSELP E     FE    G  KVV+ATN+AESS+TLPDVD VICLG+ KQ+     + +  L   W+ K+ A+QRAG RTGRVRPG  +RLYS  + E L  ++  PE++R PLD L+L L++ML + PV+P+L   +EPP+  ++  +  SL+ MG + +  DD  LT +G FVS LGVD+
Sbjct:  815 ILERLAAA--PDRR----PDSAVLIFVSGMSDILELSESIERMSTVALTYKVLPIHSELPIETQFRVFESCGQGEFKVVIATNAAESSLTLPDVDTVICLGTHKQVERIGGSDQTQLVNTWVPKSGAIQRAG-RTGRVRPGRCFRLYSSDLFESLP-DYEVPEVRREPLDKLILRLRSML-DQPVLPLLNDLIEPPSCAAIDAAFASLHRMGMIQAASDDGNLTVSGRFVSRLGVDI 1042          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSM0_ECTSI5.310e-11669.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2UD67_9STRA1.150e-7146.34Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B5Y583_PHATC7.960e-6443.21Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4MMP8_9STRA5.900e-6246.42Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5JF36_FISSO1.080e-6141.72Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2L2B3_9STRA1.210e-6144.71Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1E7ENH0_9STRA6.880e-6144.06Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
K0RU78_THAOC9.500e-6143.25Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A448ZQI2_9STRA4.460e-6051.32Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A3P3YNW4_PLABS1.600e-5148.52Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58325contigH-elongata_contig58325:109..3716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score374.8
Seed ortholog evalue3.7e-101
Seed eggNOG ortholog2880.D8LSM0
Preferred nameYTHDC2
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
EggNOG free text desc.positive regulation of polysome binding
EggNOG OGsCOG1643@1,KOG0921@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons6
Model size879
Cds size879
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58325.13313.1prot_H-elongata_contig58325.13313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58325 109..3716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.5575953-CDS-H-elongata_contig58325:108..3041622930945.5575953-CDS-H-elongata_contig58325:108..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 109..304 +
1691679635.531921-CDS-H-elongata_contig58325:108..3041691679635.531921-CDS-H-elongata_contig58325:108..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 109..304 +
1622930945.6188693-CDS-H-elongata_contig58325:751..8701622930945.6188693-CDS-H-elongata_contig58325:751..870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 752..870 +
1691679635.553808-CDS-H-elongata_contig58325:751..8701691679635.553808-CDS-H-elongata_contig58325:751..870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 752..870 +
1622930945.6363175-CDS-H-elongata_contig58325:1195..13571622930945.6363175-CDS-H-elongata_contig58325:1195..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 1196..1357 +
1691679635.5668356-CDS-H-elongata_contig58325:1195..13571691679635.5668356-CDS-H-elongata_contig58325:1195..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 1196..1357 +
1622930945.6568863-CDS-H-elongata_contig58325:2090..21731622930945.6568863-CDS-H-elongata_contig58325:2090..2173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 2091..2173 +
1691679635.5774274-CDS-H-elongata_contig58325:2090..21731691679635.5774274-CDS-H-elongata_contig58325:2090..2173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 2091..2173 +
1622930945.692086-CDS-H-elongata_contig58325:2668..28401622930945.692086-CDS-H-elongata_contig58325:2668..2840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 2669..2840 +
1691679635.5878143-CDS-H-elongata_contig58325:2668..28401691679635.5878143-CDS-H-elongata_contig58325:2668..2840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 2669..2840 +
1622930945.7983878-CDS-H-elongata_contig58325:3569..37161622930945.7983878-CDS-H-elongata_contig58325:3569..3716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 3570..3716 +
1691679635.6056824-CDS-H-elongata_contig58325:3569..37161691679635.6056824-CDS-H-elongata_contig58325:3569..3716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58325 3570..3716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58325.13313.1

>prot_H-elongata_contig58325.13313.1 ID=prot_H-elongata_contig58325.13313.1|Name=mRNA_H-elongata_contig58325.13313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
SAIFLFSRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTP
QARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSA
DVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDN
VICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRL
YSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPP
NMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL
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mRNA from alignment at H-elongata_contig58325:109..3716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58325.13313.1 ID=mRNA_H-elongata_contig58325.13313.1|Name=mRNA_H-elongata_contig58325.13313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3608bp|location=Sequence derived from alignment at H-elongata_contig58325:109..3716+ (Himanthalia elongata Himel1 dioecious)
TCAGCGATTTTTTTGTTTTCTCGTCTTTTTCGTTCTAGGGAGGTGTACGT GGATGACCTAGAGGACGAGCTGAGCTACCGCGTGGTGATGAGAAAGGCGT GCGCCAGCCTCGTCCAGGCGACCAGTATCCTCGACAGCACCCCAACTCCT CAGGCAAGGAACCTCCTCTCTCGTCTCGCCGCGGCGGATTTCCCGGGTTG GAGGAAGCTTTCTTCGAACGGGAGTGGGGGGTGGGGGGGGACTTATTTTG CGAGAGTTCTGACCCGCTTGCGTAGAAATTCCGCCGTCGCGATATTTTGA CCAGCGTGTTTTAATGTTAGTGGCGTGAAAATGGCTTTCTCTACCCGCCG TGCCGTGTATCAATGAAGCCACGCAACGCGAGGTCAGGGTGTAAGCGCCA GATCGATCTAGGGAACATTACATTGAGTCCTAAACAAGAATCTGTCTCTC GTCGGTGTTACGTGTGAATCTTTCACTCTTTCCCTCTGTACTCGCAGCGA TTCTTTTGGCGTCAATTCGGCGAGGTCCATCTTGTCGCCTCTCTCTCACG TGCCTTGCTACGAAAAAAACAATATCTTCTGCGAATTGCGTCGTACTCTA CTGTCGCAGATCTTGACCATTCAACATAGCCTGGCGGTGCAAGTGGCGCG GGCGGTGGGCTCGCCCGGCTCGGCAGTGCTCATCTTCGTCCCAGGAATGG CATCCATCCTCGCCATCATGGAGCTCTTCGAGCTCATCTCGTCGGCCGAT GTCATCTACAAGGTAAGCGTTATGGCCAAAACGAACACCATGGATGGTTT GCGGTGTTGCCAGAGTCCTCTCCTTGGAGGCCTCAAGCGACCGGAAACAA GTTCTTGCGCAGCAACAGACGTATGGAAGAGTGTGTTTCATTACTGAATC CCCATCATCTCTGCTGCGGTCAATAGCACGATGCTTGTGTAGAGTTAAAT CTATCTAGTGCCGAAAAAAAGAAGAAGAAAAAGTTGAATACAAACGACTT ATTCGCTCTGTTTCATCTATTTTAAGGTTTTCCCGTTTTGCCCCTCTCGT TCACTCTCCCTCCTGATTTTCTTGCTTTTTGTCCTAGGTGATCCCATTCC ACTCGGAGCTGCCGAAGGAGGAGATAATGTCGGCGTTCGAGCCGGCAGAC GATGGTGTCGTGAAGGTGGTCGTCGCGACCAACAGCGCGGAGAGCTCGAT TACCCTGCCTGACGTAGACAACGTCATCTGCCTGGGCTCGTGCAAGCAGG TTTGGACTACAGAAAGTTCGGGCCACGTGCTGCTTCAAATATGTAGTGGC ACCCTCCACGAAGTCTTGATGATTTTTTGTTGCCTTTGTTGGCGCATGTA TGTTGGCGTGCACACGACGTCGTCCGTGCAGCAGTCGCGACCGACGGGCT GTGGCGCCAGATGCAATGAACGCTAATACACACACGGGCGTGCGCACACG TGTGTTTGAACTGGATTCATGGCGACGTGGGTTCTCGAATCGAATTGCTT ATGTTTCAACTCCTTCGCGGCGACGTGTAGGGCGCGCATGAAGCAGACTT CTAAAGCTTGCGTTGTGGATTGATTGCGGTGTTGTCGTACGGTACAGTAC TGCTATAATACGACTTTGCCGCCGGTGGGGATACATTTGCCACATCGTCA TCGTAATGTTAGAAGTCATAAGCCGAAGCTGAAAATACACGTTCGACGGG GATTATATATGGTTGCGCGATTTTTTTTTTGCCTCAAGAGCTGGAAACCT AACAATGCTCCTGCTGCTAATCATACTCCACTGTACGTATGCGTGTTGTG TGTGTCTTGTGGTGCGCGCTTACACGTGAATTAATGTTGGATTATATGCC CCCTGTCTCAACTCTCTTGTTTCTCCTATTTGTATTTCATCTTGTTTCAC GTGTAGCTGTGTCTGTCGGTGCATCCCATGCGTTCCACAACTATAACGCC TTTCCCACAACTATAACGCCTTTCCCCTGTAGATGATGTTCGACGATCGA ACGCAGCGTTGTACGCTAACGCCCGTGTGGATATCCAAGGCCTCCGCGGT ACAGAGGGCCGGAAGGTGCGATGTGCACCAGAAAGTTAGCTTGGTATCTA GAAAGCACTCGTCACTTGGTACTTACTCTCTGCATTGTAGACTAGGCCGG TTGTGTTGCGGGGTCGCGTACCAATCCCGTCGTGGCCGCCCATGGTGGCG CTTAAATGCGGTGCTGTTTGTAGGGCCATAGTGTTCGAGGTCCTCCCCCC TTCGGAGATGGTTGCTTCATACTTAACCAGCTCTGATGTGGTTGGGCTCG AGAAATTCGTGTGCAATACTCTGAACGAGTGCCGTTTACTTCCGAAATTG CTTCGTTCGCAGGGTCTGTTACATGCAGTGTCACATCGCGCAAGAACTGC GAGCTGCAACTGCGCGAGCGGGCTGTAACTGCGCGGTTACTCCCCAAATA TTGATAATTACTTTTTTTTTGCGCAAACATTTTGATATGAGCTTCGCTTA CTTTGCTCAGTCCTGTTTTTCTCCCACGTTTGCTGCTGTTCGTATTTGAA TCTTCGCGAGCAGGACAGGGAGGGTGCGACCGGGAACCGTGTACAGGCTG TACTCGAGGAGGATGGGAGAGGAGCTCATGAACGAGCACGGCGACCCTGA GATCAAGCGACTCCCTCTTGACTCCCTGGTGCTGGAACTGAAGAACATGC TCGTGAACAGTCCCGTGGTCCCCGTCTTGAAGGTGCGGGCTAGCAAGCGC AGTCTCTTCACGCACCAAAGCATCCAATATATATATATATATATATAATA TATATGCCATCATAGACGACTTCAACACATTCTGTGCGAGTGGATATCGT CGCCGCCGACTTCGCCTGTAAAACCATTTTTTTGGGGGTGTGAATTAGAC CGAGATAATGCACACCTAGGCGTCCACGGTTATTATTTTTACTCTGAGCG GGATGCCTGCAAAAGGCACCAGCGCCAACGCGTACCGCTCTTCCATCGAC AATTATTCCGGAAGCAGTTCATTTATTCCTCGGGGGGCGCGCAGTGAAAT CCGCTTCGTCGGTGGTAATGGGATAGAGGCTGGACGTTATGAGTTGTATT ATAGTGTCTTTAGCATTTTAGTAGATCCACGGCGTCCCGGAGGATGGGTA TGCTCGGGGGGATGGTACACAGTTGGTATTATTGGAGGCTGAGGGTATTG GTGGCGAGTGAGCGCCGGAGCTTCTGGCGTTGGGTTTGTACGTCCTCAGA TTGTTTGCTGTGTTCTGTCTTGGTCGCGGTGAGATACGTTCGATGTGTTT TTCGCGCCGAAACCGTTCGATGGAGGGCACAACCTCCGCTGCCTCGAATA GGAGCGTGTATTTCGAGGTTCTATATTGCCCCCTCAATCCATACCGTACC AATTTCCTACTCTGCCCTCCCACCACCCCCCCCCCCACCTTCCCCCCGGC TAACGCTGCAGAGCACTCTCGAGCCCCCGAACATGACCTCCGTGCAGCGT AGCCTGGAATCTCTGTACAACATGGGGTTTGTTTCTTCCCATGACGACGA CTCGGTGCTCACGGACACCGGCCATTTTGTATCGGGGTTGGGGGTCGATC TGCACCTC
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Coding sequence (CDS) from alignment at H-elongata_contig58325:109..3716+

>mRNA_H-elongata_contig58325.13313.1 ID=mRNA_H-elongata_contig58325.13313.1|Name=mRNA_H-elongata_contig58325.13313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig58325:109..3716+ (Himanthalia elongata Himel1 dioecious)
TCAGCGATTTTTTTGTTTTCTCGTCTTTTTCGTTCTAGGGAGGTGTACGT
GGATGACCTAGAGGACGAGCTGAGCTACCGCGTGGTGATGAGAAAGGCGT
GCGCCAGCCTCGTCCAGGCGACCAGTATCCTCGACAGCACCCCAACTCCT
CAGGCAAGGAACCTCCTCTCTCGTCTCGCCGCGGCGGATTTCCCGGTCAG
CGATTTTTTTGTTTTCTCGTCTTTTTCGTTCTAGGGAGGTGTACGTGGAT
GACCTAGAGGACGAGCTGAGCTACCGCGTGGTGATGAGAAAGGCGTGCGC
CAGCCTCGTCCAGGCGACCAGTATCCTCGACAGCACCCCAACTCCTCAGG
CAAGGAACCTCCTCTCTCGTCTCGCCGCGGCGGATTTCCCGGTGGCGCGG
GCGGTGGGCTCGCCCGGCTCGGCAGTGCTCATCTTCGTCCCAGGAATGGC
ATCCATCCTCGCCATCATGGAGCTCTTCGAGCTCATCTCGTCGGCCGATG
TCATCTACAAGTGGCGCGGGCGGTGGGCTCGCCCGGCTCGGCAGTGCTCA
TCTTCGTCCCAGGAATGGCATCCATCCTCGCCATCATGGAGCTCTTCGAG
CTCATCTCGTCGGCCGATGTCATCTACAAGGTGATCCCATTCCACTCGGA
GCTGCCGAAGGAGGAGATAATGTCGGCGTTCGAGCCGGCAGACGATGGTG
TCGTGAAGGTGGTCGTCGCGACCAACAGCGCGGAGAGCTCGATTACCCTG
CCTGACGTAGACAACGTCATCTGCCTGGGCTCGTGCAAGCAGGTGATCCC
ATTCCACTCGGAGCTGCCGAAGGAGGAGATAATGTCGGCGTTCGAGCCGG
CAGACGATGGTGTCGTGAAGGTGGTCGTCGCGACCAACAGCGCGGAGAGC
TCGATTACCCTGCCTGACGTAGACAACGTCATCTGCCTGGGCTCGTGCAA
GCAGATGATGTTCGACGATCGAACGCAGCGTTGTACGCTAACGCCCGTGT
GGATATCCAAGGCCTCCGCGGTACAGAGGGCCGGAAGATGATGTTCGACG
ATCGAACGCAGCGTTGTACGCTAACGCCCGTGTGGATATCCAAGGCCTCC
GCGGTACAGAGGGCCGGAAGCAGGACAGGGAGGGTGCGACCGGGAACCGT
GTACAGGCTGTACTCGAGGAGGATGGGAGAGGAGCTCATGAACGAGCACG
GCGACCCTGAGATCAAGCGACTCCCTCTTGACTCCCTGGTGCTGGAACTG
AAGAACATGCTCGTGAACAGTCCCGTGGTCCCCGTCTTGAAGCAGGACAG
GGAGGGTGCGACCGGGAACCGTGTACAGGCTGTACTCGAGGAGGATGGGA
GAGGAGCTCATGAACGAGCACGGCGACCCTGAGATCAAGCGACTCCCTCT
TGACTCCCTGGTGCTGGAACTGAAGAACATGCTCGTGAACAGTCCCGTGG
TCCCCGTCTTGAAGAGCACTCTCGAGCCCCCGAACATGACCTCCGTGCAG
CGTAGCCTGGAATCTCTGTACAACATGGGGTTTGTTTCTTCCCATGACGA
CGACTCGGTGCTCACGGACACCGGCCATTTTGTATCGGGGTTGGGGGTCG
ATCTGCACCTCAGCACTCTCGAGCCCCCGAACATGACCTCCGTGCAGCGT
AGCCTGGAATCTCTGTACAACATGGGGTTTGTTTCTTCCCATGACGACGA
CTCGGTGCTCACGGACACCGGCCATTTTGTATCGGGGTTGGGGGTCGATC
TGCACCTC
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