mRNA_H-elongata_contig58325.13313.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI) HSP 1 Score: 377 bits (968), Expect = 5.310e-116 Identity = 203/293 (69.28%), Postives = 238/293 (81.23%), Query Frame = 1
Query: 1 SAIFLFSRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
S +F+ SR F R+VYV++L LSYR V++KAC S+ ATS + TP+ +L + +A VAR V SPGSAVLIFVPGMA+IL IM LFELISSA V YKVIPFHS+LPKEE+MSAF P +GVVKVVVATNSAESSITLPDVDNVICLGSCK+M+FD +T R TLTPVWIS+ASAVQRAG RTGRVRPGTVY+LYSR MG E+M+EHG EI RLPLD+L+L+LKNM+ SPV+P+LKST+EPP++ SV RSLESL+ MGF +S DDD VLTDTG F SGLGVDL L
Sbjct: 1039 SPLFVGSRRFPVRQVYVNELAQRLSYRRVLKKACESIELATSDATARVTPKVLSLQTNMAVQ---VARGVASPGSAVLIFVPGMATILEIMNLFELISSAHVTYKVIPFHSDLPKEEVMSAFGPVGEGVVKVVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAG-RTGRVRPGTVYKLYSRAMGTEIMSEHGMSEILRLPLDALILDLKNMMPGSPVIPILKSTVEPPDLQSVHRSLESLHAMGFTTSPDDDGVLTDTGRFASGLGVDLEL 1327
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A7S2UD67_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD67_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.150e-71 Identity = 133/287 (46.34%), Postives = 185/287 (64.46%), Query Frame = 1
Query: 19 SRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
++ F E YV+DL+ + +A + Q TP + +L+ ++ +A +VGS GS+VLIFVPGMA I++I +L E + + + P H ++P E+ + AFEPA+ G VKV++ATNSAESSITLPDVD+VICLG CKQ+ ++ + R L P WISKASA QRAG RTGRVRPGTVYRLY+R E M+ E+ R+PLDS++L L +ML V+P+L LEPPN++++ RS +SLY+ F++S DD +T G V GLG+DL L
Sbjct: 132 AKRFPIEEFYVEDLDHHIHLPSKQLEAANVIYQFCEKNYCNTTPPS-HLVEKMHGLAVQIALSVGSNGSSVLIFVPGMADIVSITDLVEKVEVHGIAFTCFPIHGDIPFEDQLQAFEPAEPGQVKVIIATNSAESSITLPDVDHVICLGLCKQITYNATSHRQILLPTWISKASATQRAG-RTGRVRPGTVYRLYARNTFEHYMDSFEPGEMSRIPLDSVILNLADMLKEE-VIPILLDCLEPPNISNIDRSFQSLYDSNFITSPDDGGEITKLGSLVVGLGIDLTL 415
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: B5Y583_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y583_PHATC) HSP 1 Score: 227 bits (579), Expect = 7.960e-64 Identity = 124/287 (43.21%), Postives = 184/287 (64.11%), Query Frame = 1
Query: 19 SRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
+R F +EV+++DL++++++ K L + + P + + ++ + +A VG PGS+VLIFVPGM I+AI EL E + V + P HS++P E+ M F+ + VK+++ATN+AESS+TLPDVD+VICLG CKQ+++++ + R L P WISKASA QRAG RTGR+RPGTVYR+Y+R + M++ E+ R+PLDS++L LK ML + V VL LEPPN+ ++ RS +SLY F++S + D +T G FV +GVDL L
Sbjct: 697 ARRFPVKEVFLEDLQEQVAFSQKEEKTVNQLASECNKMKCAKPPSL-SYMEKIFSLVSHIAMFVGRPGSSVLIFVPGMNEIVAITELVEQLFKPGVRFTCFPIHSDIPFEDQMIVFDATAEDEVKIIIATNAAESSVTLPDVDHVICLGLCKQIVYNEASHRQILMPTWISKASATQRAG-RTGRLRPGTVYRMYTREVYRHYMDDFEPGEMVRIPLDSVILMLKEMLSDEDVTKVLLDCLEPPNIATIDRSFQSLYKCRFITSAEGDCEITSLGSFVLAMGVDLLL 981
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A7S4MMP8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMP8_9STRA) HSP 1 Score: 222 bits (565), Expect = 5.900e-62 Identity = 136/293 (46.42%), Postives = 184/293 (62.80%), Query Frame = 1
Query: 7 IFLFSRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSI--LDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
IF+ +R F +E +V+DL L +SL +A + P N+L LA + +VG GS+VLIFVPGMA I AI E E ++ V + +P HS++P EE M AF+P G VKV++ATN+AESS+TLPDVD+VICLG KQ++++ + R LTP WIS+ASA QRAG RTGRVR G VYRLYSR + M+ E+ R+PLDS++L L++ML N V P+L + LEPPN+T+++RS ESLY+ F+S +D +T G LGVDL L
Sbjct: 848 IFVGARRFPIKEYFVEDLAQLLHLGPREAMNASSLYEACEKQRCRTAPPNSQMNMLYGLATQ---ITLSVGRHGSSVLIFVPGMADIEAITENIEELNVPGVAFTCLPIHSDVPFEEQMQAFDPPGFGEVKVILATNAAESSVTLPDVDHVICLGLAKQIIYNRASHRQMLTPCWISRASATQRAG-RTGRVREGNVYRLYSRNTFSQYMDPFETGEMLRIPLDSVILSLRDML-NEEVTPMLLNCLEPPNLTTIERSFESLYDHKFISEPNDQGEITSLGSLAVSLGVDLTL 1135
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A1Z5JF36_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF36_FISSO) HSP 1 Score: 221 bits (563), Expect = 1.080e-61 Identity = 121/290 (41.72%), Postives = 189/290 (65.17%), Query Frame = 1
Query: 19 SRLFRSREVYVDDLEDELSYRVVMR--KACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVP-VLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
++ F +E Y++D D +++ R K +L+ P N++ ++ + +A ++G PGS+VLIFVPGM I++I EL E + DV++ P HS++P E+ M F P G +K+++ATN+AESS+TLPD D+VICLG CKQ++++ + R L P WIS+ASA QRAG RT RVRPGTVYR+Y+R + E M+E E++R+PLDS++L LK ++ + V +L LEPP+M++++RS +SL+ F++ DD+ +T+ G+FV+ LG+DL L
Sbjct: 693 AKRFPLKEYYLEDFLDPKQFKLPPREKKTVDALIANCKTTKCRAAPS-YNVMEKVFSFVTYLATSLGQPGSSVLIFVPGMNEIVSITELVEQVYVPDVVFTCFPIHSDIPFEDQMEVFAPPKPGEIKIMIATNAAESSVTLPDCDHVICLGLCKQIVYNQLSHRQMLLPTWISRASATQRAG-RTSRVRPGTVYRMYTRDIFERHMDEFEPGEMRRIPLDSVILMLKQIVESEESVSKILSECLEPPDMSTIERSYDSLHKSHFLTQPDDEGTITNLGNFVAALGIDLTL 980
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A7S2L2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B3_9STRA) HSP 1 Score: 219 bits (559), Expect = 1.210e-61 Identity = 131/293 (44.71%), Postives = 182/293 (62.12%), Query Frame = 1
Query: 22 RLFRSREVYVDDLEDELS-------YRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
R F E +V+DLE +LS Y + CA S + P ++ + LA+ + +VG GS+VLIFV GM+ I +I EL E ++ DV + P HS++P EE M AFEP +G VKVV+ATN+AESS+TLPDVD+VIC+G CKQ++++ + R L P WIS+ASA QRAG RTGRVR G VYRLYSR E + EI R PLDS++L L++ML N PV +L LE P++++++RS +SL+ F+S +D+ +T G+ V LG+DL L
Sbjct: 501 RRFPINEYFVEDLESQLSLSRKHAQYSQDIHDECAK-----SRCSAAPPDAIKDKMYHLASQ---ITASVGQHGSSVLIFVAGMSDIQSISELIERLNVRDVTFTCFPIHSDIPFEEQMEAFEPPSEGEVKVVIATNAAESSVTLPDVDHVICMGLCKQIVYNKSSHRQQLIPTWISRASATQRAG-RTGRVRNGNVYRLYSRDAYSEYFDPFEAGEILRSPLDSVILNLRDML-NEPVTEILLECLEAPDISTIERSFQSLHASNFISQPNDEGEITSLGNLVVALGIDLKL 783
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A1E7ENH0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH0_9STRA) HSP 1 Score: 219 bits (557), Expect = 6.880e-61 Identity = 126/286 (44.06%), Postives = 177/286 (61.89%), Query Frame = 1
Query: 22 RLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
R F E +++DL + KA +++ + P++ + +R A +A VG PGS+VLIFVP M I++I E E + Y P H ++P EE M+AF ++ VKV++ATN+AESS+TLP VD+VICLG CKQ++++ + R LTP WIS+ASA QRAG RTGRVRPG VYRLY+RR E M E E+ R+PLDS++L LK +L + V+P LEPP + ++ RS +SL++ GF++ DD + +T G FVS LGVDL L
Sbjct: 481 RTFPITEYFIEDLS-QFGLPSQEAKAASAIRKEIESKKCVTAPKSAEISNRFALTAR-LATIVGEPGSSVLIFVPRMGEIVSITECIESFHMTGIRYTCFPIHGDIPFEEQMNAFNDPEEDEVKVIIATNAAESSVTLPAVDHVICLGLCKQIIYNQASHRQMLTPAWISRASATQRAG-RTGRVRPGNVYRLYTRRAYENYMEEFEPGEMLRIPLDSVILLLKQIL-HEEVIPAFMDCLEPPPLDTISRSFQSLHHWGFITEADDKADITSLGSFVSSLGVDLSL 762
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC) HSP 1 Score: 218 bits (556), Expect = 9.500e-61 Identity = 125/289 (43.25%), Postives = 184/289 (63.67%), Query Frame = 1
Query: 19 SRLFRSREVYVDDLEDELSYRVVMRKACASLVQ--ATSILDSTPTPQARNLLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
+R F +E +V++L L + + + S P+ + L LAA+ + +VG GS+VLIFVPGM+ I AI + + ++ V + +P HS++P EE M+AFEP +G VKV++ATN+AESS+TLPDVD+VICLG CKQ+M+++++ R L+ WIS+ASA QRAG RTGRVRPG VYRLYSR + M+ + E+ R+PLD ++L L++M+ N V P+L LEPP++T+++RS ESL+ F++ D +T G V LG+DL L
Sbjct: 845 ARRFPIKEYFVEELASALYLGPRDARLATDIYKDCERSKAQHAPSNPTMDKLHNLAAS---ITASVGGHGSSVLIFVPGMSDIEAISDRVDCLNVPGVEFVCLPIHSDVPFEEQMAAFEPPGEGEVKVIIATNAAESSVTLPDVDHVICLGLCKQIMYNNQSHRQMLSSTWISRASATQRAG-RTGRVRPGNVYRLYSRNCFKHYMDPYESGEMVRIPLDQVILSLRDMM-NEAVTPILLDCLEPPDVTNIERSFESLHTSNFITDASDQGEITSLGGLVVALGIDLAL 1128
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A448ZQI2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQI2_9STRA) HSP 1 Score: 216 bits (551), Expect = 4.460e-60 Identity = 117/228 (51.32%), Postives = 156/228 (68.42%), Query Frame = 1
Query: 196 VARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDLHL 879
+A VG PGS+VLIFVPGMA I+AI E E + V Y P H ++P E+ M AF VK+++ATN+AESS+TLP+VD+VICLG C+Q++++ + R LTP WIS+ASA QRAG RTGRVRPG VYRLY+RR +E E+ R+PLDS++L LK +L + VVPV LEPP + ++ RS +SLY+ F++ DD++ +T G FVS LGVDL L
Sbjct: 786 LATLVGIPGSSVLIFVPGMAEIIAISECIEGFHTPGVRYTCFPIHGDIPFEDQMEAFHAPAKDEVKIIIATNAAESSVTLPNVDHVICLGLCRQIIYNQASHRQMLTPAWISQASAKQRAG-RTGRVRPGNVYRLYTRRAHNNYFDEFEPGEMVRIPLDSVILMLKQIL-HEEVVPVFMDCLEPPPLDTIDRSFQSLYHWNFITEPDDEADITSLGSFVSALGVDLSL 1011
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Match: A0A3P3YNW4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YNW4_PLABS) HSP 1 Score: 192 bits (487), Expect = 1.600e-51 Identity = 115/237 (48.52%), Postives = 154/237 (64.98%), Query Frame = 1
Query: 163 LLSRLAAADFPVARAVGSPGSAVLIFVPGMASILAIMELFELISSADVIYKVIPFHSELPKEEIMSAFEPADDGVVKVVVATNSAESSITLPDVDNVICLGSCKQMMFDDRTQRCTLTPVWISKASAVQRAGSRTGRVRPGTVYRLYSRRMGEELMNEHGDPEIKRLPLDSLVLELKNMLVNSPVVPVLKSTLEPPNMTSVQRSLESLYNMGFVSSHDDDSVLTDTGHFVSGLGVDL 873
+L RLAAA P R P SAVLIFV GM+ IL + E E +S+ + YKV+P HSELP E FE G KVV+ATN+AESS+TLPDVD VICLG+ KQ+ + + L W+ K+ A+QRAG RTGRVRPG +RLYS + E L ++ PE++R PLD L+L L++ML + PV+P+L +EPP+ ++ + SL+ MG + + DD LT +G FVS LGVD+
Sbjct: 815 ILERLAAA--PDRR----PDSAVLIFVSGMSDILELSESIERMSTVALTYKVLPIHSELPIETQFRVFESCGQGEFKVVIATNAAESSLTLPDVDTVICLGTHKQVERIGGSDQTQLVNTWVPKSGAIQRAG-RTGRVRPGRCFRLYSSDLFESLP-DYEVPEVRREPLDKLILRLRSML-DQPVLPLLNDLIEPPSCAAIDAAFASLHRMGMIQAASDDGNLTVSGRFVSRLGVDI 1042 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58325.13313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58325.13313.1 >prot_H-elongata_contig58325.13313.1 ID=prot_H-elongata_contig58325.13313.1|Name=mRNA_H-elongata_contig58325.13313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp SAIFLFSRLFRSREVYVDDLEDELSYRVVMRKACASLVQATSILDSTPTPback to top mRNA from alignment at H-elongata_contig58325:109..3716+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58325.13313.1 ID=mRNA_H-elongata_contig58325.13313.1|Name=mRNA_H-elongata_contig58325.13313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3608bp|location=Sequence derived from alignment at H-elongata_contig58325:109..3716+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58325:109..3716+ >mRNA_H-elongata_contig58325.13313.1 ID=mRNA_H-elongata_contig58325.13313.1|Name=mRNA_H-elongata_contig58325.13313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig58325:109..3716+ (Himanthalia elongata Himel1 dioecious)back to top |