mRNA_H-elongata_contig58277.13308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58277.13308.1
Unique NamemRNA_H-elongata_contig58277.13308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.310e-23
Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   16 TTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADY---IPPQELSIKCVRTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERA 432
            T G    C  C  +K +   + K+TD RA+ K  R F+++GG M+  S+GG  Y +I  DD TR+  V F+K KSD  AA    +ADY     P E+ +   RTD  GEF+G+F     R  I  E TPP+TP+YNGVAERA
Sbjct:  162 TGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERA 301          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.020e-21
Identity = 61/142 (42.96%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   16 TTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIP---PQELSIKCVRTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERA 432
            T G    C  C  +  +   V K+T  RA  K  R ++D+GG MK  S+GG  Y +I  DD++R+  V F+K KSD    L   +ADY     P E+ I   RTD  GEF+G+F     R  I  E TPP TP+YNGVAERA
Sbjct:  613 TDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERA 752          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.140e-19
Identity = 57/143 (39.86%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   16 TTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADY----IPPQELSIKCVRTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERA 432
            T G    C  C  +KA+   V K T  RA     R ++D+ G MK  S+GG  Y +I  DD++R+  V F+K KSD        +ADY    +P ++      R D  GEF+G+F     R  I  E TPP TP+YNGVAERA
Sbjct:  668 TDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDF---IARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERA 807          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-19
Identity = 55/127 (43.31%), Postives = 72/127 (56.69%), Query Frame = 1
Query:   55 AKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELSIKCV-RTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERA 432
            +K +   V K+T  RA  K  R ++D+GG MK  S+GG  Y +I  DD++R+  V F+K KSD        +ADY         C+ RTD  GEF+G+F     R  I  E TPP TP+YNGVAERA
Sbjct:    2 SKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERA 128          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.990e-19
Identity = 57/143 (39.86%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   16 TTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADY----IPPQELSIKCVRTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERA 432
            T G    C  C  +K +   V K+T  RA  K  R ++D+GG MK  S+GG  Y +I  DD++R+  V F+K KSD        +ADY    +P     +   RTD  GEF+G+F     R  I  E TPP TP Y  VAERA
Sbjct:  449 TDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVP---CKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERA 588          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 93.6 bits (231), Expect = 2.070e-19
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 1
Query:    1 MTRIGTTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELSIKCVRTDNRGEFEG-EFQRELDRRSITHEHTPPDTPQYNGVAER 429
            M  +  T +   CEAC + K  R   PKT D RAS   +  + DV GPM   SLGG  Y V F+DDY+R+  V F+K KS+                   IK +R+DN GE+   EF+  L +  I H+ + P  P  NGVAER
Sbjct:  357 MDGVSNTNENQFCEACIKGKYHRCPYPKTADYRASEPFEHVYSDVCGPMSVPSLGGSRYYVSFIDDYSRYTFVYFMKNKSEVLEKFKEFHTFATNITGKPIKVLRSDNGGEYSSKEFESFLKKNGIVHQLSVPYNPAQNGVAER 500          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A7D9J652_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J652_PARCT)

HSP 1 Score: 91.3 bits (225), Expect = 2.450e-19
Identity = 56/144 (38.89%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 MTRIGTTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELSIKCVRTDNRGEFEG-EFQRELDRRSITHEHTPPDTPQYNGVAER 429
            M  +  T +   CEAC + K  R   PKT D RAS   +    DV GPM   SLGG  Y V F+DDY+R+  V F+K KS+                   IK +R+DN GE+   EF+  L +  I H+ + P  P  NGVAER
Sbjct:   81 MDGVSNTNENQFCEACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFIDDYSRYTFVYFMKNKSEVLEKFKEFHTYATNITGKPIKVLRSDNGGEYSSKEFESFLKKNGIVHQLSVPYNPAQNGVAER 224          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.360e-18
Identity = 57/143 (39.86%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   16 TTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELSIKC----VRTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERA 432
            T G    C  C  +K +   V K T  RA  K  R ++D+ G MK  S+GG  Y +I  DD++R+    F+K KSD        +ADY   +   I C     RTD  GEF+G+F     R  I  E TPP TP+YN VAERA
Sbjct:  159 TDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY---RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERA 298          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A7D9M7S0_PARCT (Myosin heavy fast skeletal muscle (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M7S0_PARCT)

HSP 1 Score: 89.7 bits (221), Expect = 4.370e-18
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   37 CEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELSIKCVRTDNRGEFEGE-FQRELDRRSITHEHTPPDTPQYNGVAERAW 435
            C+ C Q K  + +  +T D+RA+        D+ GP+      G +Y + FVDDY+   ++ F+K KSDT  A    +AD  P  +  +KC+R+DN GEF G+ F+  L   +I HE   P +P  NG AERAW
Sbjct:  466 CKTCTQGKMTQ-SRNRTPDKRANAPFDLVHSDLAGPISPGGKDGFNYALSFVDDYSGIIMIYFLKHKSDTVEATKQFLADIAPLGK--VKCIRSDNGGEFIGQKFKSLLRENTIKHETCAPYSPHQNGTAERAW 596          
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Match: A0A7D9KZD7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KZD7_PARCT)

HSP 1 Score: 89.4 bits (220), Expect = 6.200e-18
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   37 CEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMKHSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELSIKCVRTDNRGEFEGE-FQRELDRRSITHEHTPPDTPQYNGVAERAW 435
            C+ C Q K  + +  +T D+RA+        D+ GP+      G +Y + FVDDY+   ++ F+K KSDT  A    +AD  P  +  +KC+R+DN GEF G+ F+  L   +I HE   P +P  NG AERAW
Sbjct:  317 CKTCTQGKMTQ-SRNRTPDKRANAPFDLVHSDLAGPISPGGKDGFNYALSFVDDYSGVIMIYFLKHKSDTVEATKQFLADIAPLGK--VKCIRSDNGGEFIGQKFKSLLRENTIKHETCAPYSPHQNGTAERAW 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58277.13308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE2.310e-2343.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE2.020e-2142.96Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JAQ2_9PHAE1.140e-1939.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAM7_9PHAE1.440e-1943.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE1.990e-1939.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9HXK4_PARCT2.070e-1938.89Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9J652_PARCT2.450e-1938.89Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6H5L1A7_9PHAE4.360e-1839.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9M7S0_PARCT4.370e-1838.06Myosin heavy fast skeletal muscle (Fragment) n=3 T... [more]
A0A7D9KZD7_PARCT6.200e-1838.06Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58277contigH-elongata_contig58277:3133..3567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog4081.Solyc04g011970.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.066337-CDS-H-elongata_contig58277:3132..35671622930945.066337-CDS-H-elongata_contig58277:3132..3567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58277 3133..3567 +
1691679635.383923-CDS-H-elongata_contig58277:3132..35671691679635.383923-CDS-H-elongata_contig58277:3132..3567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58277 3133..3567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58277.13308.1prot_H-elongata_contig58277.13308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58277 3133..3567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58277.13308.1

>prot_H-elongata_contig58277.13308.1 ID=prot_H-elongata_contig58277.13308.1|Name=mRNA_H-elongata_contig58277.13308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MTRIGTTGQWGACEACFQAKAKRYTVPKTTDERASVKGQRFFVDVGGPMK
HSSLGGLSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYIPPQELS
IKCVRTDNRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERAW
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mRNA from alignment at H-elongata_contig58277:3133..3567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58277.13308.1 ID=mRNA_H-elongata_contig58277.13308.1|Name=mRNA_H-elongata_contig58277.13308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at H-elongata_contig58277:3133..3567+ (Himanthalia elongata Himel1 dioecious)
ATGACGAGGATTGGAACCACGGGTCAGTGGGGGGCATGCGAGGCGTGTTT CCAGGCGAAGGCGAAGCGATATACGGTGCCAAAGACGACGGACGAGCGGG CTAGCGTGAAAGGACAGCGATTCTTTGTCGACGTGGGTGGACCGATGAAG CACTCGAGTCTCGGCGGGCTCAGCTACGTCGTCATTTTCGTGGACGACTA CACCCGTTTCAAGGTGGTGAAGTTTGTTAAAAGGAAGAGTGACACAACGG CCGCGCTTTTGTCTTTGATTGCAGATTATATCCCCCCGCAGGAGCTGTCG ATCAAGTGCGTACGGACGGATAATCGTGGCGAGTTCGAGGGGGAATTTCA GCGCGAACTAGACCGGCGCAGCATCACGCACGAGCATACCCCGCCAGACA CGCCGCAGTACAACGGGGTGGCCGAACGCGCTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig58277:3133..3567+

>mRNA_H-elongata_contig58277.13308.1 ID=mRNA_H-elongata_contig58277.13308.1|Name=mRNA_H-elongata_contig58277.13308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig58277:3133..3567+ (Himanthalia elongata Himel1 dioecious)
ATGACGAGGATTGGAACCACGGGTCAGTGGGGGGCATGCGAGGCGTGTTT
CCAGGCGAAGGCGAAGCGATATACGGTGCCAAAGACGACGGACGAGCGGG
CTAGCGTGAAAGGACAGCGATTCTTTGTCGACGTGGGTGGACCGATGAAG
CACTCGAGTCTCGGCGGGCTCAGCTACGTCGTCATTTTCGTGGACGACTA
CACCCGTTTCAAGGTGGTGAAGTTTGTTAAAAGGAAGAGTGACACAACGG
CCGCGCTTTTGTCTTTGATTGCAGATTATATCCCCCCGCAGGAGCTGTCG
ATCAAGTGCGTACGGACGGATAATCGTGGCGAGTTCGAGGGGGAATTTCA
GCGCGAACTAGACCGGCGCAGCATCACGCACGAGCATACCCCGCCAGACA
CGCCGCAGTACAACGGGGTGGCCGAACGCGCTTGGATGACGAGGATTGGA
ACCACGGGTCAGTGGGGGGCATGCGAGGCGTGTTTCCAGGCGAAGGCGAA
GCGATATACGGTGCCAAAGACGACGGACGAGCGGGCTAGCGTGAAAGGAC
AGCGATTCTTTGTCGACGTGGGTGGACCGATGAAGCACTCGAGTCTCGGC
GGGCTCAGCTACGTCGTCATTTTCGTGGACGACTACACCCGTTTCAAGGT
GGTGAAGTTTGTTAAAAGGAAGAGTGACACAACGGCCGCGCTTTTGTCTT
TGATTGCAGATTATATCCCCCCGCAGGAGCTGTCGATCAAGTGCGTACGG
ACGGATAATCGTGGCGAGTTCGAGGGGGAATTTCAGCGCGAACTAGACCG
GCGCAGCATCACGCACGAGCATACCCCGCCAGACACGCCGCAGTACAACG
GGGTGGCCGAACGCGCTTGG
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