mRNA_H-elongata_contig58261.13307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig58261.13307.1
Unique Name	mRNA_H-elongata_contig58261.13307.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.210e-48
Identity = 83/130 (63.85%), Postives = 98/130 (75.38%), Query Frame = 1

Query:    1 MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            M++E VL  LPD KN+RTALQH VE RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR+++DE+PKHLH NI  S+  +  LT+ RV RFARRTRDYCRAY  +        +K+ IE+MRK  KAHRN
Sbjct:   69 MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKPKFRRKIDDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRN 198

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 9.100e-47
Identity = 84/130 (64.62%), Postives = 97/130 (74.62%), Query Frame = 1

Query:    1 MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            M++E VL  LPD KN+RTALQH VE RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR++NDE+PKHLH NI  S+     LT+ RV RFARRTRDYCRAY  +        +K+ IE+MRK  KAHRN
Sbjct:  239 MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKINDEVPKHLHDNIEESLCIHKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRN 368

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.540e-45
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 1

Query:    4 NLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            N+E VL  L D +++RTALQ+ VE RGHIL++SPK HPEVAGVGIEYSWG SK +FRR+ NDE+PKHLH NI  SM RE  LT+ RV RFARRTRDYCRAY  +Q      +   ++E+MR T KAHRN
Sbjct:  244 NVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEVPKHLHANIEKSMCREKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRN 372

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.050e-45
Identity = 84/130 (64.62%), Postives = 97/130 (74.62%), Query Frame = 1

Query:    1 MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            M++E VL  LPD KN+RTALQH VE RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR +NDE+PKHLH NI  S+  +  LT+ RV RFARRTRDYCRAY  +        +K+ IE+MRK  KAHRN
Sbjct:  434 MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRRINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRN 563

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.390e-44
Identity = 84/130 (64.62%), Postives = 98/130 (75.38%), Query Frame = 1

Query:    1 MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            M++E VL  LPD KN+RTALQH VE RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR++NDE+PKHLH NI  S+  +  LT+ RV RFARRTRDYCRAY  +        +K+ IE+MRK  KAHRN
Sbjct:  848 MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRN 977

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5L885_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L885_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.480e-44
Identity = 84/130 (64.62%), Postives = 98/130 (75.38%), Query Frame = 1

Query:    1 MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            M++E VL  LPD KN+RTALQH VE RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR++NDE+PKHLH NI  S+  +  LT+ RV RFARRTRDYCRAY  +        +K+ IE+MRK  KAHRN
Sbjct:  617 MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKINDEVPKHLHGNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRN 746

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5K836_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K836_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.070e-42
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 1

Query:   43 NKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            ++RT LQH VE+RGHIL+++PK HPEVAGVG +YSWG+SK KFRR++NDE+PKHLH NI  S+  +  LT+ RV RFARRTRD+CRAY  +        SKD IE+MRK  KAHRN
Sbjct:   21 SERTVLQHLVERRGHILLLAPKCHPEVAGVGTKYSWGLSKQKFRRKINDEVPKHLHANIEKSLCTDKYLTVGRVRRFARRTRDHCRAYRDIALSGGFIMSKDFIEKMRKNQKAHRN 136

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.420e-41
Identity = 80/129 (62.02%), Postives = 96/129 (74.42%), Query Frame = 1

Query:    4 NLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            N+E VL  L D +++RTALQ+ VE RGHIL++SPK HPEVAGVGIEYSWG SK +FRR+ NDE+PKHLH NI  SM  E  LT+ RV RFARRTRDYCRAY  +Q      +   ++E+MR T KAHRN
Sbjct:  840 NVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEVPKHLHANIEKSM--EKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRN 966

[Close]

BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 7.450e-40
Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 1

Query:    4 NLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            N+E VL  L + +++RT LQ  VE RGHIL++SPK HPEVAGVGIEYSWG SK +FRR+ NDE+PKHLH NI  SM RE  L + RV RFARRTRDYCRAY   Q      +   ++E+MR T KAHRN
Sbjct:  894 NIEKVLQALTNFESERTELQCLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEVPKHLHANIEKSMCREKHLMIGRVRRFARRTRDYCRAYRETQLGAVDGQGLQLVEKMRDTQKAHRN 1022

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BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.380e-39
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 1

Query:    1 MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSWGMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCRAYLRLQKVPEGAESKDIIERMRKTCKAHRN 390
            M++E VL  LPD K +RTAL+H VE RGHI +   K HPEVAGVGIEYSWG SK KFRR++NDE+PKHLH NI  S+  +  LT+ RV RFARRTRDYCRAY  +        S + IE+MRK  KAHRN
Sbjct:  504 MHVEKVLHALPDFKIERTALEHLVESRGHIHLS--KCHPEVAGVGIEYSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREIALSGVVIRSNEFIEKMRKIQKAHRN 631

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot

BLAST of mRNA_H-elongata_contig58261.13307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22


Match Name	E-value	Identity	Description
A0A6H5JCU7_9PHAE	4.210e-48	63.85	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVH4_9PHAE	9.100e-47	64.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K769_9PHAE	1.540e-45	62.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQB9_9PHAE	2.050e-45	64.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L611_9PHAE	1.390e-44	64.62	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L885_9PHAE	1.480e-44	64.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K836_9PHAE	3.070e-42	62.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVN6_9PHAE	2.420e-41	62.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P7_9PHAE	7.450e-40	60.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXL0_9PHAE	5.380e-39	60.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig58261	contig	H-elongata_contig58261:743..1132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	73.9
Seed ortholog evalue	6e-11
Seed eggNOG ortholog	159749.K0T4Q0
EggNOG OGs	2D06V@1,2SD1E@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	390
Cds size	390
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930945.019142-CDS-H-elongata_contig58261:742..1132	1622930945.019142-CDS-H-elongata_contig58261:742..1132	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig58261 743..1132 -
1691679635.3729694-CDS-H-elongata_contig58261:742..1132	1691679635.3729694-CDS-H-elongata_contig58261:742..1132	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig58261 743..1132 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig58261.13307.1	prot_H-elongata_contig58261.13307.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig58261 743..1132 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig58261:743..1132-
coding sequence from alignment at H-elongata_contig58261:743..1132-

protein sequence of mRNA_H-elongata_contig58261.13307.1

>prot_H-elongata_contig58261.13307.1 ID=prot_H-elongata_contig58261.13307.1|Name=mRNA_H-elongata_contig58261.13307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MNLELVLGGLPDSKNKRTALQHTVEKRGHILVMSPKFHPEVAGVGIEYSW
GMSKLKFRRELNDEIPKHLHQNIVASMNRESILTLPRVCRFARRTRDYCR
AYLRLQKVPEGAESKDIIERMRKTCKAHRN

mRNA from alignment at H-elongata_contig58261:743..1132-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig58261.13307.1 ID=mRNA_H-elongata_contig58261.13307.1|Name=mRNA_H-elongata_contig58261.13307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig58261:743..1132- (Himanthalia elongata Himel1 dioecious)
ATGAACTTGGAGCTGGTCCTGGGCGGTCTTCCCGATTCCAAGAACAAACG
GACAGCACTACAACACACAGTGGAGAAACGGGGGCATATTTTGGTGATGT
CGCCCAAGTTTCACCCAGAGGTAGCTGGTGTTGGTATCGAGTACTCGTGG
GGAATGTCCAAACTCAAATTCCGGCGGGAGCTCAACGACGAGATTCCAAA
GCACCTGCACCAGAACATCGTTGCATCCATGAACCGGGAATCGATCTTAA
CCCTGCCGCGGGTTTGTCGCTTCGCACGCCGCACTCGAGACTACTGCCGG
GCGTACTTGAGACTCCAGAAGGTTCCGGAAGGAGCTGAATCCAAGGACAT
CATTGAGAGAATGCGCAAGACATGTAAAGCTCACCGCAAC

Coding sequence (CDS) from alignment at H-elongata_contig58261:743..1132-

>mRNA_H-elongata_contig58261.13307.1 ID=mRNA_H-elongata_contig58261.13307.1|Name=mRNA_H-elongata_contig58261.13307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig58261:743..1132- (Himanthalia elongata Himel1 dioecious)
ATGAACTTGGAGCTGGTCCTGGGCGGTCTTCCCGATTCCAAGAACAAACG
GACAGCACTACAACACACAGTGGAGAAACGGGGGCATATTTTGGTGATGT
CGCCCAAGTTTCACCCAGAGGTAGCTGGTGTTGGTATCGAGTACTCGTGG
GGAATGTCCAAACTCAAATTCCGGCGGGAGCTCAACGACGAGATTCCAAA
GCACCTGCACCAGAACATCGTTGCATCCATGAACCGGGAATCGATCTTAA
CCCTGCCGCGGGTTTGTCGCTTCGCACGCCGCACTCGAGACTACTGCCGG
GCGTACTTGAGACTCCAGAAGGTTCCGGAAGGAGCTGAATCCAAGGACAT
CATTGAGAGAATGCGCAAGACATGTAAAGCTCACCGCAACATGAACTTGG
AGCTGGTCCTGGGCGGTCTTCCCGATTCCAAGAACAAACGGACAGCACTA
CAACACACAGTGGAGAAACGGGGGCATATTTTGGTGATGTCGCCCAAGTT
TCACCCAGAGGTAGCTGGTGTTGGTATCGAGTACTCGTGGGGAATGTCCA
AACTCAAATTCCGGCGGGAGCTCAACGACGAGATTCCAAAGCACCTGCAC
CAGAACATCGTTGCATCCATGAACCGGGAATCGATCTTAACCCTGCCGCG
GGTTTGTCGCTTCGCACGCCGCACTCGAGACTACTGCCGGGCGTACTTGA
GACTCCAGAAGGTTCCGGAAGGAGCTGAATCCAAGGACATCATTGAGAGA
ATGCGCAAGACATGTAAAGCTCACCGCAAC