mRNA_H-elongata_contig58236.13305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58236.13305.1
Unique NamemRNA_H-elongata_contig58236.13305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58236.13305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58236contigH-elongata_contig58236:1290..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58236.13305.1prot_H-elongata_contig58236.13305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58236 1414..1758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.8396254-UTR-H-elongata_contig58236:1289..14131622930944.8396254-UTR-H-elongata_contig58236:1289..1413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58236 1290..1413 +
1691679635.2916949-UTR-H-elongata_contig58236:1289..14131691679635.2916949-UTR-H-elongata_contig58236:1289..1413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58236 1290..1413 +
1622930944.8758557-UTR-H-elongata_contig58236:1758..17641622930944.8758557-UTR-H-elongata_contig58236:1758..1764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58236 1759..1764 +
1691679635.3168464-UTR-H-elongata_contig58236:1758..17641691679635.3168464-UTR-H-elongata_contig58236:1758..1764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58236 1759..1764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.8597443-CDS-H-elongata_contig58236:1413..17581622930944.8597443-CDS-H-elongata_contig58236:1413..1758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58236 1414..1758 +
1691679635.3005025-CDS-H-elongata_contig58236:1413..17581691679635.3005025-CDS-H-elongata_contig58236:1413..1758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58236 1414..1758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58236.13305.1

>prot_H-elongata_contig58236.13305.1 ID=prot_H-elongata_contig58236.13305.1|Name=mRNA_H-elongata_contig58236.13305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MRGAVQVTNYRQLRMCTLLPLSTRSSQDHHFHGHYGMLSVVSVNWFYSRI
IRIRIRFVPSSSLHTRGLFPFSSICIKPRKPARHVRGRHAGLQIPPLMGN
QFSKSLDRANWHYT*
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mRNA from alignment at H-elongata_contig58236:1290..1764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58236.13305.1 ID=mRNA_H-elongata_contig58236.13305.1|Name=mRNA_H-elongata_contig58236.13305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=475bp|location=Sequence derived from alignment at H-elongata_contig58236:1290..1764+ (Himanthalia elongata Himel1 dioecious)
CCTCAAGAGGAAATATTGATGCTCTTTGATTCGTGGCTGACGGCCTTGCT
CAAGTGCCTTGTAGTTTTTATTAAAAACCTTGAACTCATTCCAACCCTCC
GAACATCCATACCTTCTTAGCACCATGAGAGGTGCAGTCCAGGTGACCAA
CTATCGTCAGCTTCGAATGTGTACATTACTACCTTTGAGCACAAGATCAT
CACAAGATCACCATTTTCATGGTCATTACGGAATGCTAAGCGTGGTCTCT
GTCAACTGGTTTTATAGCCGTATAATAAGAATAAGAATACGTTTCGTACC
TTCGTCATCTCTTCATACGAGAGGTTTGTTTCCTTTTTCATCAATTTGCA
TTAAACCGCGCAAACCGGCAAGACACGTGAGGGGGCGCCACGCCGGTTTG
CAAATACCCCCCCTTATGGGGAATCAATTTTCCAAATCATTAGACCGCGC
AAACTGGCATTACACGTAAGGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig58236:1290..1764+

>mRNA_H-elongata_contig58236.13305.1 ID=mRNA_H-elongata_contig58236.13305.1|Name=mRNA_H-elongata_contig58236.13305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig58236:1290..1764+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGGTGCAGTCCAGGTGACCAACTATCGTCAGCTTCGAATGTGTAC
ATTACTACCTTTGAGCACAAGATCATCACAAGATCACCATTTTCATGGTC
ATTACGGAATGCTAAGCGTGGTCTCTGTCAACTGGTTTTATAGCCGTATA
ATAAGAATAAGAATACGTTTCGTACCTTCGTCATCTCTTCATACGAGAGG
TTTGTTTCCTTTTTCATCAATTTGCATTAAACCGCGCAAACCGGCAAGAC
ACGTGAGGGGGCGCCACGCCGGTTTGCAAATACCCCCCCTTATGGGGAAT
CAATTTTCCAAATCATTAGACCGCGCAAACTGGCATTACACGTAAATGAG
AGGTGCAGTCCAGGTGACCAACTATCGTCAGCTTCGAATGTGTACATTAC
TACCTTTGAGCACAAGATCATCACAAGATCACCATTTTCATGGTCATTAC
GGAATGCTAAGCGTGGTCTCTGTCAACTGGTTTTATAGCCGTATAATAAG
AATAAGAATACGTTTCGTACCTTCGTCATCTCTTCATACGAGAGGTTTGT
TTCCTTTTTCATCAATTTGCATTAAACCGCGCAAACCGGCAAGACACGTG
AGGGGGCGCCACGCCGGTTTGCAAATACCCCCCCTTATGGGGAATCAATT
TTCCAAATCATTAGACCGCGCAAACTGGCATTACACGTAA
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