mRNA_H-elongata_contig58183.13298.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58183.13298.1
Unique NamemRNA_H-elongata_contig58183.13298.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.110e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATLVRDRG 129
            G+  EA+PLY RA+E+GE  LGPDHPDLATWLNN A L+R +G
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQG 50
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: A0A7S3NLA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.240e-11
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATLVRDRG 129
            GK DEA+PL +RA+EIGE  LGP+HPDL +WLNNLA L+ ++G
Sbjct:    1 GKYDEAKPLVQRAIEIGEESLGPNHPDLVSWLNNLAVLLINQG 43
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 58.9 bits (141), Expect = 3.400e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATL 114
            GK +EAEPLY+RA++I E VLGPDHP +AT LNNLA L
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.660e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATLVR 120
            GK  EA+PLY RA++IG+ +LGPDHPDLA WLNN A L++
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLK 49
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.580e-9
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLA 108
            GK +EA+PLY RAVEIGE  LGPDHP LA WLNN A
Sbjct:    8 GKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKA 43
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: UPI0019337E49 (tetratricopeptide repeat-containing protein n=1 Tax=Frankia sp. AgW1.1 TaxID=1836971 RepID=UPI0019337E49)

HSP 1 Score: 57.8 bits (138), Expect = 3.100e-8
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   22 PLYRRAVEIGEAVLGPDHPDLATWLNNLATLVRDRG 129
            PLY RA+ I EAV GPDHPD++TWLNNLA+ ++D G
Sbjct:    3 PLYERALAITEAVYGPDHPDVSTWLNNLASALQDLG 38
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BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.540e-8
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATL 114
            GK DE +PLY RA+EIGE  LGPDHP LAT LNN A +
Sbjct:   51 GKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRARM 88
[Close]
BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 58.9 bits (141), Expect = 6.150e-8
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATL 114
            GK +EAEPLY+RA++I E VLGPDHP +AT LNNLA L
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
[Close]
BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-7
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATLVR 120
            G   EA+P   RA+EIGE VLGP+HPDLA WLNN A L+R
Sbjct:  644 GNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLR 683
[Close]
BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.190e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATLVR 120
            GK D+AEPLY RA+ IGE  LGP+HPDLA WLN  A L++
Sbjct:   13 GKYDDAEPLYVRAIAIGEKSLGPEHPDLAVWLNYWAGLLK 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58183.13298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLM3_ECTSI1.110e-1167.44Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A7S3NLA4_9STRA3.240e-1165.12Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
UPI0013D295283.400e-971.05tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5L045_9PHAE7.660e-965.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C4_9PHAE9.580e-975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0019337E493.100e-866.67tetratricopeptide repeat-containing protein n=1 Ta... [more]
D8LPW2_ECTSI5.540e-868.42TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0013D05A066.150e-871.05tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A6H5JJK0_9PHAE1.170e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE1.190e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58183contigH-elongata_contig58183:135..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D8LLM3
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.1029541-CDS-H-elongata_contig58183:134..2411622930944.1029541-CDS-H-elongata_contig58183:134..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58183 135..241 -
1691679634.9694805-CDS-H-elongata_contig58183:134..2411691679634.9694805-CDS-H-elongata_contig58183:134..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58183 135..241 -
1622930944.122612-CDS-H-elongata_contig58183:976..12291622930944.122612-CDS-H-elongata_contig58183:976..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58183 977..1229 -
1691679634.9799666-CDS-H-elongata_contig58183:976..12291691679634.9799666-CDS-H-elongata_contig58183:976..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58183 977..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58183.13298.1prot_H-elongata_contig58183.13298.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58183 135..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58183.13298.1

>prot_H-elongata_contig58183.13298.1 ID=prot_H-elongata_contig58183.13298.1|Name=mRNA_H-elongata_contig58183.13298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
GKLDEAEPLYRRAVEIGEAVLGPDHPDLATWLNNLATLVRDRGDPAAAEP
LQRRAVSIGERSLGPGHPDQGAQVINLASLLSAQGNADEAESLFRTGIKT
LETAYGPGHPDLAAVLSHFA
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mRNA from alignment at H-elongata_contig58183:135..1229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58183.13298.1 ID=mRNA_H-elongata_contig58183.13298.1|Name=mRNA_H-elongata_contig58183.13298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-elongata_contig58183:135..1229- (Himanthalia elongata Himel1 dioecious)
GGCAAGCTAGACGAGGCGGAACCCCTTTACCGCAGAGCCGTAGAGATCGG
AGAGGCCGTGTTGGGCCCGGACCACCCGGACTTGGCCACCTGGCTCAACA
ACCTGGCGACGCTGGTGAGAGACAGGGGAGACCCGGCAGCGGCAGAGCCC
CTCCAGAGACGGGCGGTTTCCATCGGGGAGCGTTCGCTGGGTCCTGGTCA
TCCCGACCAAGGGGCGCAGGTCATCAACTTGGCTTCACTCCTGAGCGCGC
AAGGTAACGACGTGGTTGGTATCCCTCCTTATCCCTCTGTCGCGTTAGTC
GACGCGATTTACCCCTCCCCCCCCCCCGCACCCGATACATGGGGAAAATA
AGCTGAGTGTTTCTGTCACAGAGAGAAGTCGCTTGCCATCCCCACATATA
TATATATATGTGTGCGCGTTTGTGCGAAGCCCCGTTTAAGGTATTTTTGT
TAAAAAGCATATGAACTCATTCCAACCCTCCGAACATGGATGCCTTCTTA
GCACCAGTACCAGTTTTATGTTGCGTTTGAGGCACGCGAGGCCATACCGT
CGAGTAGTAGAGTATATCCTTTCACGAGAACGCGAATCATCCGCCCTCTC
GCCCGCGCTCGGCTGCCTAACATGTTTTGCGCAATAGAAATCTACCGCGA
TGTAATATCGTGTATAGTATGTACGGGTATATAAAATGTCATAATATATT
ATGGACATTTCTTCTACGTAAAACAATGCTTTCTGATAGTTGGTCCCCTG
GATTGCACTTACGGTGACAAGAAGGTGTGGGTGTTCGGAGAGTTAGAATG
AGCCTAAAGTTAATCGTCCGCGAAGGCAGACATCACATTCGGCTCAGCTT
ACGGTCAGGCCTCAGCGGACGATTTTCTTGCCCCTGGAGCTCGTGGTCGT
CTGTTTCTCATATACCTCGCACTTTGGGTTTCCTAATATCTTGCGCTCTC
CTGCGTTTCATTGGGGGGGGGGGATCGGGAGGGAACAGGTAATGCCGATG
AGGCGGAGTCGCTGTTCCGGACGGGCATCAAGACTCTCGAGACCGCGTAC
GGGCCTGGCCATCCCGACTTGGCCGCGGTGCTGAGTCACTTCGCT
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Coding sequence (CDS) from alignment at H-elongata_contig58183:135..1229-

>mRNA_H-elongata_contig58183.13298.1 ID=mRNA_H-elongata_contig58183.13298.1|Name=mRNA_H-elongata_contig58183.13298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig58183:135..1229- (Himanthalia elongata Himel1 dioecious)
GGCAAGCTAGACGAGGCGGAACCCCTTTACCGCAGAGCCGTAGAGATCGG
AGAGGCCGTGTTGGGCCCGGACCACCCGGACTTGGCCACCTGGCTCAACA
ACCTGGCGACGCTGGTGAGAGACAGGGGAGACCCGGCAGCGGCAGAGCCC
CTCCAGAGACGGGCGGTTTCCATCGGGGAGCGTTCGCTGGGTCCTGGTCA
TCCCGACCAAGGGGCGCAGGTCATCAACTTGGCTTCACTCCTGAGCGCGC
AAGGGCAAGCTAGACGAGGCGGAACCCCTTTACCGCAGAGCCGTAGAGAT
CGGAGAGGCCGTGTTGGGCCCGGACCACCCGGACTTGGCCACCTGGCTCA
ACAACCTGGCGACGCTGGTGAGAGACAGGGGAGACCCGGCAGCGGCAGAG
CCCCTCCAGAGACGGGCGGTTTCCATCGGGGAGCGTTCGCTGGGTCCTGG
TCATCCCGACCAAGGGGCGCAGGTCATCAACTTGGCTTCACTCCTGAGCG
CGCAAGGTAATGCCGATGAGGCGGAGTCGCTGTTCCGGACGGGCATCAAG
ACTCTCGAGACCGCGTACGGGCCTGGCCATCCCGACTTGGCCGCGGTGCT
GAGTCACTTCGCTGTAATGCCGATGAGGCGGAGTCGCTGTTCCGGACGGG
CATCAAGACTCTCGAGACCGCGTACGGGCCTGGCCATCCCGACTTGGCCG
CGGTGCTGAGTCACTTCGCT
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