mRNA_H-elongata_contig5818.13296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5818.13296.1
Unique NamemRNA_H-elongata_contig5818.13296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5818.13296.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 3.530e-55
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 1 
Query:    4 PRPGYKEFYDGETTPTDHVDR--GGMRNDKVTRCIDERSPVISIVGDNPVYYRQGDSYRELGVKVVDVRDDDSDRTVKIEFSESPGIYFKKVGNITVRYVLANEFLE-EGEISDVRTVVVEDVDECTYDGSRVEFQHACVQEAACLNKIGGYECHCAKGYAGDGLATGTGCMDVEPPVI 531
            PR GYK + DGET P+D+ +   GG R DK+TRC+D+R+P  +I G NP  YRQGDSY ELGV + D  DD+S+R + I++S  PG Y KK G  TVRYVL N  LE +G IS +R V V DVDECTY G   EF+HAC  EA C N  GGYEC CA+GYAGDGL TG GC+DV PP I
Sbjct:  208 PRHGYKAYIDGETVPSDYYETIAGGKRLDKITRCVDKRTPDFTIRGPNPSVYRQGDSYEELGVTIDDRNDDESERKIGIQYSTPPGAYLKKTGEFTVRYVLENRLLEGDGTISKIRKVEVLDVDECTYTGRHAEFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDVTPPTI 386
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BLAST of mRNA_H-elongata_contig5818.13296.1 vs. uniprot
Match: A0A835ZFQ6_9STRA (EGF_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.170e-23
Identity = 73/194 (37.63%), Postives = 91/194 (46.91%), Query Frame = 1 
Query:  112 SPVISIVGDNPVYYRQGDSYRELGVKVVDVRDDDSDRTVKIEFSESPGIYFKKVGNITVRYVL----------ANEFLEEGEISDVRTVVVEDVDECTYDGSRVEFQHACVQ--------------------------------------------EAACLNKIGGYECHCAKGYAGDGLATGTGCMDVEPPVI 531
            S  I + G NP+   QGD+Y ELGV V D  + D DRTVKI++SE  G +FKK G   V Y L          AN   E   ++  R V V D+DECTY+G    F H CV+                                            +A C+N  G YECHC+ GY GDGL+TGTGC+DV  PV+
Sbjct:  592 SAKILVNGQNPLRLHQGDTYSELGVTVNDENEQDGDRTVKIQYSEPFGAFFKKAGKYQVVYSLEVPWLPTGDGANTIGEPATVTAQRDVYVADIDECTYEGPNDYFMHQCVRGHDDLLQQVCSNYIPVVWSLRGFICLLLHAQIRLKVRVLVALVLQATCVNTDGSYECHCSTGYKGDGLSTGTGCVDVMQPVM 785
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BLAST of mRNA_H-elongata_contig5818.13296.1 vs. uniprot
Match: A0A6H5L5P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.090e-23
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 3 
Query: 1374 LKADMCGHGDLASSEAEDGADEE-----EDDGEWKPEACFVATDVEFGGKVIDLTRNITRGSLERVPGKDKMWRVPHHVKVRAGSSVIISY 1631
            LK D+CGHG  A   A D  D E      D  EWKPE CF ATDVE+GG+V+DLT NITRG+LE++PG++ MWRVPH+VK  +G+S  + Y
Sbjct:   10 LKGDLCGHGYAAGPGAADDDDFEGEGDASDSREWKPEVCFTATDVEYGGRVVDLTANITRGALEKIPGREGMWRVPHNVKDASGNSAKVFY 100
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BLAST of mRNA_H-elongata_contig5818.13296.1 vs. uniprot
Match: A0A7S4MS12_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MS12_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.790e-10
Identity = 59/202 (29.21%), Postives = 89/202 (44.06%), Query Frame = 1 
Query:   97 CIDERSPVISIV-----GDNPVYYRQGDSYRELGVKVVDVRDDDSDRTVKIEFSES--PGIYFKKVGNITVRYVLANEFLEEGEISDVRTVVVEDVDECTYDGSRVEFQHACVQ---------EAACLNKIGGYECHCAKGYAGDGLATGTGCMDVEPPVIVSSP--VRGIKSLGETFTGYAWLIDFSTYL*K*GPFPRILQ 648
            C+DE  PV+ +      GD     RQGD YRE  V++ D   ++  R++KI +S    PG    K G   V Y +A  +     +   RTV++EDVDEC+ D +  E++  C +          A C+N  G Y C C +   GDG     G    E    +++P    G K   +T   +  L          GP P++ +
Sbjct:  452 CVDESPPVLKLRNDPSDGDGITALRQGDVYREHAVEIADDNAEEYLRSLKITYSRPLPPGC-LAKTGRFYVNYTVATPWTSPPYVRVTRTVIIEDVDECSLDPA--EYESRCPELVPRCDVEAGAQCVNTRGSYSCRCPEYTTGDGFLPMEGAQKDERGRYINTPEGYAGGKGCRDTSAPHVELT---------GPNPKVFR 641
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5818.13296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVY1_ECTSI3.530e-5558.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFQ6_9STRA1.170e-2337.63EGF_3 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6H5L5P6_9PHAE5.090e-2356.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4MS12_9STRA3.790e-1029.21Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5818contigH-elongata_contig5818:4493..8097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue8.9e-45
Seed eggNOG ortholog2880.D7FVY1
KEGG koko:K05120
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
EC2.7.10.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01020,ko04050
Hectar predicted targeting categoryother localisation
Exons4
Model size2250
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5818.13296.1prot_H-elongata_contig5818.13296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5818 4565..6465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.7957945-UTR-H-elongata_contig5818:4492..45641622930943.7957945-UTR-H-elongata_contig5818:4492..4564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5818 4493..4564 +
1691679634.852029-UTR-H-elongata_contig5818:4492..45641691679634.852029-UTR-H-elongata_contig5818:4492..4564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5818 4493..4564 +
1622930943.9072876-UTR-H-elongata_contig5818:6465..80971622930943.9072876-UTR-H-elongata_contig5818:6465..8097Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5818 6466..8097 +
1691679634.901325-UTR-H-elongata_contig5818:6465..80971691679634.901325-UTR-H-elongata_contig5818:6465..8097Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5818 6466..8097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.8211823-CDS-H-elongata_contig5818:4564..46511622930943.8211823-CDS-H-elongata_contig5818:4564..4651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 4565..4651 +
1691679634.866852-CDS-H-elongata_contig5818:4564..46511691679634.866852-CDS-H-elongata_contig5818:4564..4651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 4565..4651 +
1622930943.842081-CDS-H-elongata_contig5818:4912..50061622930943.842081-CDS-H-elongata_contig5818:4912..5006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 4913..5006 +
1691679634.874753-CDS-H-elongata_contig5818:4912..50061691679634.874753-CDS-H-elongata_contig5818:4912..5006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 4913..5006 +
1622930943.8648748-CDS-H-elongata_contig5818:5586..57291622930943.8648748-CDS-H-elongata_contig5818:5586..5729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 5587..5729 +
1691679634.8822973-CDS-H-elongata_contig5818:5586..57291691679634.8822973-CDS-H-elongata_contig5818:5586..5729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 5587..5729 +
1622930943.887115-CDS-H-elongata_contig5818:6243..64651622930943.887115-CDS-H-elongata_contig5818:6243..6465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 6244..6465 +
1691679634.8917935-CDS-H-elongata_contig5818:6243..64651691679634.8917935-CDS-H-elongata_contig5818:6243..6465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 6244..6465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5818.13296.1

>prot_H-elongata_contig5818.13296.1 ID=prot_H-elongata_contig5818.13296.1|Name=mRNA_H-elongata_contig5818.13296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MRNDKVTRCIDERSPVISIVGDNPVYYRQGDSYRELGVKVVDVRDDDSDR
TVKIEFSESPGIYFKKVGNITVRYVLANEFLEEGEISDVRTVVVEDVDEC
TYDGSRVEFQHACVQEAACLNKIGGYECHCAKGYAGDGLATGTGCMDVEP
PVIVSSPVRGIKSLGETFTGYAWLIDFSTYL*
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mRNA from alignment at H-elongata_contig5818:4493..8097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5818.13296.1 ID=mRNA_H-elongata_contig5818.13296.1|Name=mRNA_H-elongata_contig5818.13296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3605bp|location=Sequence derived from alignment at H-elongata_contig5818:4493..8097+ (Himanthalia elongata Himel1 dioecious)
TCACCCCGCCCGGGTTACAAGGAATTCTACGATGGTGAGACGACCCCGAC
GGATCACGTGGACCGGGGAGGGATGAGGAACGACAAGGTTACCCGCTGCA
TCGACGAGCGCTCCCCCGTAATCAGCATCGTGGGGGACAACCCTGTGTAC
TATCGACAGGCGAGTCGGAAGAGATGGGTCGTGGCCTGCGTCGGAGCCGG
GGAGGCGAAATTCGTCATATTTTAATATCTGCTCTAGCGCCTGTAGAGGT
CGAGGACGATATCTGCCGAACGCGAGTGTTTTCGCGGGAATAGGCGTTTT
GGATGAGCGCAGCGCCTTGGTTTAGGAGACCACGACCTAGTTGTAGCTCG
ATGTAAGTGTTTCTCCTCTCTTGGCTGAGATCTGGTCGAGCTGATCCACC
CATATCCGTGGGATTCACAGGGTGACTCCTACAGGGAGCTCGGTGTGAAA
GTGGTCGACGTAAGAGACGATGACAGTGACCGGACAGTCAAGATCGAGTT
CTCGGAATCTCCAGGCAAGTGTTTTTGTTTTGGGAGGGGAGATAAGGGTT
GTAAAACGCAAGCGTTGCCTCCCTCTGTCGAAAAAACGTCGACAGTAGCC
CGAAAAAAATGCCGAAAAACACTTGAATCAGCCTGTTATCACGGTCCTTC
CAGTTGTATACATCTATAGTATTTTGGTGTTCTAACCAGGAGGCTCCTAG
GCACAAAGTATCCGCTGATCATATATTTTGAACGGCAACGATTCAGGGCA
AGCTGGCCATGTCGTAATCGGATAGTCAAGGCGCTCACGCACATCTCTTC
AGCCTAGAAATCCGCCAAGTTCGCACCGTGAAAGCCGCGTTTTAGTTTTT
GAGATTGTTTCGTATCGGGTTTTGTGAGGCTCCCAACATTGAAGTCCGCC
GATTTCGCTGGAATTTGGTGTGCGTGGAAGTCCAATCTCGTAGTTTACAA
AATTCTTTTATTCTATGCAAGTTTAAATATACAGCGATCTTGGTTCAAAT
ATCGCGATGCGCGACCGAGTTTGTCTTGGTCGGCCCAGCCTGTAGGCACC
CATTGCGTGTTTTGCGTGGTTCGTTTTGTTCCCCATTGCGCCAGGCATCT
ACTTCAAGAAAGTAGGCAACATCACGGTCCGGTACGTCTTGGCCAACGAG
TTCCTGGAAGAAGGGGAGATCTCCGACGTCCGCACGGTGGTGGTAGAGGA
CGTGGACGAGTGCACGTACGACGGCTCCCGCGTCGAGGTACACGCCTCTA
TGTCGACGCGCCCGTGTTTTCAAGACACCAGAGTCTTCGAACAGAAGCGC
TTCTCTTAGCCTGCGCAGTTTTGAATGAGGCTCTTTGCGAAGTATGAATT
TGTATGTATTGTATGTGTGTCCCTGGAAGCATTTTGGAGCGTGGGGGGCC
GAATAAACAATAATGTTTTTTCTTCCCGAAAATACCATCAGCCTTCAGAA
TAATGCTGTCACAAGAGAAAGACCTTCCGGCCCTTACCGGCTGACTCTGG
AGTCGTTGGGTTTTGTCCGTCCCCATTGAACGCTCGCCTCTTCGTCGCCG
CGTCCCGCATACCTCCAAACCCTCACCGCTTCACTACCTCCGGTCGCGAT
GGTATGCCAAGGCACGTCAGGTTGTAAGGAATAAAAAATACGTCCATATA
TACGAAGCCGTCTCTGACTCGTCCCGTCAATCTTGTTGCCTCTCCTTATA
CTCCCTTTCTTTCCGCCCCTCCCCTCGCCGACCCCTCTTGGCTTTCGGCA
GTTCCAACACGCCTGCGTACAAGAAGCTGCCTGTCTCAACAAGATCGGCG
GATACGAGTGCCACTGCGCGAAGGGGTACGCGGGAGACGGACTTGCGACC
GGAACAGGATGCATGGACGTAGAGCCTCCCGTTATCGTGAGTTCACCCGT
ACGGGGGATCAAGTCTCTCGGAGAAACGTTCACGGGGTATGCGTGGCTGA
TTGATTTTTCTACATATTTATGAAAATAGGGGCCCTTTCCCCGAATTCTC
CAATGACTGCCGCCGCTCCTTTGATACAAGTTTGCCCCCTGAGCGACTTG
ACTCACAATCACAATGAGTGGCTCACATCTACTGTATTAATACACACTTA
TCTTTCCGAGCGACGCCGGTCGCTAATAGGGTCGAAAGGGAGGTCCATAA
AACAAAACCTGTAACGTGTTTCAGTCGGGAGGGAAGTTGTGAGTAAACTC
CCCGACAAGCACATGAAACAGTCCCACGTATGAAGCATAAGGTCCGAACG
GACGGTGTCTATGGCTGCTGTCAAAAAATCATGCCGAAAGCATTAATTTC
TGCGTTCATGTTCGACTCATCTTGCTCTCGCTCCCGTTTTGGTCCCCCGC
TCACCCGCTCCGGATCCGATGCTTTCGGAATATCGGCGGAAGACTTGTGT
GGGCCCGGGGTGTGAAACGTCCACCTTTCGAGCATGCAACTGCGTCGGGC
TAATCTCCGCGGATGGTTCCAAGAAGCGCTTGCCCGACGCCCTGGATGAT
GCCATCATCGAGAGCAACATCCGGCTGGTGAGCGCGTGCTCCGTTACGCT
ACCTAAATCAGAGAAAGAGAAGGGATACTGTACACAGGGCGCGTTGTTGG
GGTTTTGGGTGGGCGACGAGGAAACAAAGGCGTAGGAGACTCGTCGTGAT
GTTCACGCAGAACTCAACCTCACAAAATGTGCCCGTCGCGGAAAAAACTG
TTCTTCGCTCGCCTGTACGATGATTTAGCTTAAGGCGGATATGTGCGGCC
ACGGGGACTTAGCCTCGTCTGAAGCCGAAGATGGGGCCGACGAGGAGGAA
GACGACGGAGAATGGAAACCCGAGGCGTGTTTTGTGGCGACGGACGTCGA
GTTCGGGGGTAAGGTGATTGATCTCACCAGGAACATCACCCGGGGATCGC
TCGAGCGAGTTCCTGGCAAGGATAAAATGTGGAGGGTTCCACACCACGTG
AAGGTGCGCGCTGGATCGAGCGTGATAATTTCTTACCTTTGGGCACTTCC
ACCAGCATCGCTCCAGTTGTGCGCCGCCGATTCTCACCTCCGTGTAGCTA
AAGCTTCATTTCCTCCCTTCTTTTTTTCTAGCGTGCCAGCGTTGATGCTG
CAAGGCACTCTGGTGCGTCTCTCCTAAGCTTGCTCTACTTTTTTTCTCGG
GCTTGTAACTCCGTCAGGATGCTGCGGGCAACTCTGCAAGCGCTTTCTAC
TTCAATATCCGCGTTGAAGAGATTGACGTCCTGGATGCCATATTCGGCAC
CGAGGAGACTCTTCAGCGCGACACATTGGAGCGTCGAGGGCTGCGGTGAG
AGTTCGAGCAAACGCTCATGGCCTTCGAAAAAGAGAACACCAATAACACT
TTCACAATAATCGGGGGAGGAACAGGTCCATTCTTCGTGTTCGTGTATTT
ATCTTGAGGGTTGTCTGGCCGCGGATGTTTCTTCGCCAGGATTAACCCCC
ATTCCCTCTGGTATGTTGTCGCTTTCTTTGTATCTCCTAATGCTGCAGAA
TTATATATTGGTCTCACCACGAAAAATCTCCGTTCAGATTTATCTTGTCC
GCCAACCCCTCCGTCTTTATTATATGACTAACTTCCCTCGCGATGTGGTG
TGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig5818:4493..8097+

>mRNA_H-elongata_contig5818.13296.1 ID=mRNA_H-elongata_contig5818.13296.1|Name=mRNA_H-elongata_contig5818.13296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig5818:4493..8097+ (Himanthalia elongata Himel1 dioecious)
ATGAGGAACGACAAGGTTACCCGCTGCATCGACGAGCGCTCCCCCGTAAT
CAGCATCGTGGGGGACAACCCTGTGTACTATCGACAGATGAGGAACGACA
AGGTTACCCGCTGCATCGACGAGCGCTCCCCCGTAATCAGCATCGTGGGG
GACAACCCTGTGTACTATCGACAGGGTGACTCCTACAGGGAGCTCGGTGT
GAAAGTGGTCGACGTAAGAGACGATGACAGTGACCGGACAGTCAAGATCG
AGTTCTCGGAATCTCCAGGGTGACTCCTACAGGGAGCTCGGTGTGAAAGT
GGTCGACGTAAGAGACGATGACAGTGACCGGACAGTCAAGATCGAGTTCT
CGGAATCTCCAGGCATCTACTTCAAGAAAGTAGGCAACATCACGGTCCGG
TACGTCTTGGCCAACGAGTTCCTGGAAGAAGGGGAGATCTCCGACGTCCG
CACGGTGGTGGTAGAGGACGTGGACGAGTGCACGTACGACGGCTCCCGCG
TCGAGGCATCTACTTCAAGAAAGTAGGCAACATCACGGTCCGGTACGTCT
TGGCCAACGAGTTCCTGGAAGAAGGGGAGATCTCCGACGTCCGCACGGTG
GTGGTAGAGGACGTGGACGAGTGCACGTACGACGGCTCCCGCGTCGAGTT
CCAACACGCCTGCGTACAAGAAGCTGCCTGTCTCAACAAGATCGGCGGAT
ACGAGTGCCACTGCGCGAAGGGGTACGCGGGAGACGGACTTGCGACCGGA
ACAGGATGCATGGACGTAGAGCCTCCCGTTATCGTGAGTTCACCCGTACG
GGGGATCAAGTCTCTCGGAGAAACGTTCACGGGGTATGCGTGGCTGATTG
ATTTTTCTACATATTTATGATTCCAACACGCCTGCGTACAAGAAGCTGCC
TGTCTCAACAAGATCGGCGGATACGAGTGCCACTGCGCGAAGGGGTACGC
GGGAGACGGACTTGCGACCGGAACAGGATGCATGGACGTAGAGCCTCCCG
TTATCGTGAGTTCACCCGTACGGGGGATCAAGTCTCTCGGAGAAACGTTC
ACGGGGTATGCGTGGCTGATTGATTTTTCTACATATTTATGA
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