mRNA_H-elongata_contig5812.13287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5812.13287.1
Unique NamemRNA_H-elongata_contig5812.13287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: D8LRI5_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI5_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 4.840e-91
Identity = 157/180 (87.22%), Postives = 165/180 (91.67%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            HPPLKQRL EVS FR+QHENLRGVLQTVL DDDRSAV+EV       AYAR PGSDVLDLGA+GAR W+EAREAYDRRVDGLEARVSALLE +LR A+TAEEMFRVFAKFNPLFVRPRIRASI+QFQ ELIGHVREAVSAIQDKFRHRYEVSEAKAL+SLRDIPPVAGKILWARQMERQL
Sbjct:  526 HPPLKQRLGEVSGFRKQHENLRGVLQTVLSDDDRSAVSEVDE-----AYARLPGSDVLDLGAEGARRWAEAREAYDRRVDGLEARVSALLEGRLRAARTAEEMFRVFAKFNPLFVRPRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEVSEAKALASLRDIPPVAGKILWARQMERQL 700
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A6H5KY19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY19_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 2.240e-90
Identity = 155/180 (86.11%), Postives = 165/180 (91.67%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            HPPL+QRL EVS FR+QHENLRGVLQTVL DDDRSAV+EV       AYAR PGSDVLDLGA+GAR W+EAREAYDRRVDGLEARVSALLE +LR A+TAEEMFRVFAKFNPLFVRPRIRASI+QFQ ELIGHVREAVSAIQDKFRHRYEVSEAKAL++LRDIPPVAGKILWARQMERQL
Sbjct:   64 HPPLRQRLGEVSGFRKQHENLRGVLQTVLSDDDRSAVSEVDE-----AYARLPGSDVLDLGAEGARRWAEAREAYDRRVDGLEARVSALLEGRLRAARTAEEMFRVFAKFNPLFVRPRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEVSEAKALATLRDIPPVAGKILWARQMERQL 238
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A2D4BM60_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM60_PYTIN)

HSP 1 Score: 170 bits (431), Expect = 1.020e-45
Identity = 89/182 (48.90%), Postives = 124/182 (68.13%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRD--DDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  +++RL E+  FREQHE LR V++ VL    D RS V++    +   AYA+F G + LD+  DG   W   R+AYD  +D +E R+ A L ++L   K A+EMFRVF+K+N LF RPRIR+++ QFQ +LI +V+E VS++Q KFR  Y +SEA   S LRDIPP+AG ++WARQ+ER+L
Sbjct:  519 HSSIEERLMELYEFREQHEKLRHVIERVLGSAIDGRSDVSDDALEEINGAYAQFSGLNPLDVSGDGIVAWKNLRKAYDLCIDRVEGRIIASLTSRLNGTKNADEMFRVFSKYNALFFRPRIRSAVQQFQMQLIENVKEDVSSLQAKFRAHYALSEASRTSKLRDIPPIAGAVMWARQIERKL 700
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A7S2UJ65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ65_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.850e-44
Identity = 91/189 (48.15%), Postives = 120/189 (63.49%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAE-VMTRDSLFAYAR--------FPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H PL++RL  +  FR QHE LR V+  VL  DD++   +  ++ DS  A           F   DVLDL   G   +  A EAYDRR+D +E R++ LL  KL  ++ AE+MFRVFA+FNPL  R R+RA++ +FQ +LI  V +AV  +Q+KF  +YE S A  +S LR IPPVAGKILWARQMERQ+
Sbjct:  208 HQPLRERLDAIHHFRSQHETLRKVVTEVLTGDDKAKSKKGELSIDSTGAIQEVESAPMQLFAAVDVLDLSPGGVAAFESALEAYDRRIDAIEERLAKLLRDKLTASQDAEDMFRVFARFNPLLTRTRVRAAVKEFQIQLISTVGQAVEKLQNKFTCKYESSPAARISRLRGIPPVAGKILWARQMERQV 396
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A8K1CJP7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJP7_PYTOL)

HSP 1 Score: 164 bits (416), Expect = 1.060e-43
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRD--DDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  +++RL EV  FREQHE L  V++ VL    D RS +++    +   AYA+F G + LD+  +G   W   R+AYD  +D +E R+   L ++L     A+EMFRVF+K+N LF RPRIR+++ QFQ +LI +V+E VS++Q KFR  Y +SEA  LS LRDIPP+AG ++WA+Q+ER+L
Sbjct:  485 HSAIEERLLEVYEFREQHEKLHQVIERVLGKAADQRSDLSDDALVEINAAYAQFSGLNPLDVSGEGTTAWKNLRKAYDLCIDRVEGRIITSLTSRLTATNNADEMFRVFSKYNALFFRPRIRSAVQQFQMQLIENVKEDVSSLQAKFRAHYALSEASRLSKLRDIPPIAGAVMWAKQIERKL 666
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A485KZB2_9STRA (Aste57867_13889 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZB2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.970e-43
Identity = 81/180 (45.00%), Postives = 120/180 (66.67%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  +++R+ E+  FREQHE LR V+Q VL   + S+  +++T D   AY +F   D+ D+  DG   W +AR+ Y+  +D +E  +   L ++L    TA+EMFRVF+K+NPLF RPRIR ++ QFQ  LI +V+E V+ +Q KFR  Y  SEA  +S LRDIPP+AG ++W++Q+ER+L
Sbjct:  457 HLAIEERMKELHEFREQHERLRLVIQRVLSKTEASSSEDMLT-DINAAYMQFSVLDLFDVSVDGTESWKQARKTYELCIDRVEGSIITSLTSRLNNTSTADEMFRVFSKYNPLFFRPRIRTAVQQFQMRLIENVKEDVTELQAKFRAHYNYSEASRMSKLRDIPPIAGAVMWSKQIERKL 635
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A1D2MTM9_ORCCI (Dynein heavy chain, cytoplasmic n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MTM9_ORCCI)

HSP 1 Score: 160 bits (406), Expect = 8.450e-43
Identity = 79/180 (43.89%), Postives = 119/180 (66.11%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  L  R+ ++  FR QHE LR V++ VL+ D +S V      +   AY+     DVLD+  +G   W  A   Y+ RVD +EA+++A L  +L  AK+A EMFR+FA+FN LFVRP+IR +I ++Q +LI  V++ + A+ +KF+ +Y +S+A  +S LRDIPPV+G I+WA+Q++RQL
Sbjct:  385 HKKLHTRMEQIRKFRRQHEQLRSVIERVLKPDQQSMVEGNANEEVGLAYSLVEEVDVLDMSKEGQEAWDAACRRYNDRVDTVEAKITAALREQLATAKSANEMFRIFARFNALFVRPQIRGAIREYQTQLIQRVKDDIEALHEKFKTQYSLSKAYRMSELRDIPPVSGSIIWAKQIDRQL 564
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A1V9Z3F8_9STRA (Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3F8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.250e-43
Identity = 85/180 (47.22%), Postives = 117/180 (65.00%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  +++R  E+  FREQHE LR V+Q VL      +  E M  D   AYA+F   DVLD+  DG   W  AR+ Y+  +D +E  + A L  +L    TA+EMFRVF+K+NPLF RPRIR+++ QFQ  LI +V+E V+ +Q KFR  Y  SEA  +S LRDIPP+AG ++W++Q+ER+L
Sbjct:  458 HLAIEERTKELHEFREQHERLRVVIQRVLSKTTDGS--EDMLTDINAAYAQFGVLDVLDVSVDGTESWKTARKTYEVCIDRIEGSIIASLTNRLNSTSTADEMFRVFSKYNPLFFRPRIRSAVQQFQMRLIENVKEDVTELQVKFRAHYTYSEASRMSKLRDIPPIAGAVMWSKQIERKL 635
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A024UIQ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIQ1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.260e-43
Identity = 84/182 (46.15%), Postives = 120/182 (65.93%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVL-RDDDRSAVA-EVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  +++R+ E+  FREQHE LR V+Q VL + DD SA + E M  +   AY +    DV D+  DG+  W +AR+ YD  +D +E  +   L  +L    TA++MFRVF+K+NPLF RPRIR ++ QFQ  LI +V+E V+ +Q KFR  Y  SEA  +S LRDIPP+AG ++W++Q+ER+L
Sbjct:  459 HLAIEERMKELHEFREQHERLRVVIQRVLSKTDDASATSSEDMLAEIHNAYMQCTSLDVFDVSVDGSDAWKQARKTYDLCIDRVEGSIIHSLTTRLNNTSTADDMFRVFSKYNPLFFRPRIRTAVQQFQMRLIENVKEDVTELQAKFRAHYNYSEASRMSKLRDIPPIAGAVMWSKQIERKL 640
[Close]
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Match: A0A6G0WJD4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJD4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.720e-42
Identity = 81/180 (45.00%), Postives = 118/180 (65.56%), Query Frame = 1 
Query:    1 HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYARFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTAEEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYEVSEAKALSSLRDIPPVAGKILWARQMERQL 540
            H  +++R+ E+  FREQHE LR V+Q VL   + S+ +E M  D   A+ +F   D+ D+  DG   W +AR+ Y+  +D +E  +   L  +L    TA+EMFRVF+K+NPLF RPRIR ++ QFQ  LI +V+E V+ +Q KFR  Y  SEA  +S LRDIPP+AG ++W++Q+ER+L
Sbjct:  457 HLAIEERMKELHEFREQHERLRLVIQRVLSKTEGSS-SEDMLSDINAAFMQFSVLDIFDVSVDGTETWKQARKTYELCIDRVEGSIITSLTTRLNNTSTADEMFRVFSKYNPLFFRPRIRTAVQQFQMRLIENVKEDVTELQAKFRAHYNYSEASRMSKLRDIPPIAGAVMWSKQIERKL 635
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5812.13287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI5_ECTSI4.840e-9187.22Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KY19_9PHAE2.240e-9086.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4BM60_PYTIN1.020e-4548.90Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2UJ65_9STRA6.850e-4448.15Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A8K1CJP7_PYTOL1.060e-4346.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KZB2_9STRA1.970e-4345.00Aste57867_13889 protein n=1 Tax=Aphanomyces stella... [more]
A0A1D2MTM9_ORCCI8.450e-4343.89Dynein heavy chain, cytoplasmic n=1 Tax=Orchesella... [more]
A0A1V9Z3F8_9STRA9.250e-4347.22Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1... [more]
A0A024UIQ1_9STRA9.260e-4346.15Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A6G0WJD4_9STRA1.720e-4245.00Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5812contigH-elongata_contig5812:286..1931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.1
Seed ortholog evalue8.4e-80
Seed eggNOG ortholog2880.D8LRI5
KEGG koko:K10413
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
GOsGO:0000003,GO:0000070,GO:0000166,GO:0000235,GO:0000278,GO:0000280,GO:0000741,GO:0000742,GO:0000746,GO:0000747,GO:0000819,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005818,GO:0005819,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007080,GO:0007097,GO:0007127,GO:0007129,GO:0008144,GO:0008150,GO:0008569,GO:0008608,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030554,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0031134,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0035974,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0044764,GO:0045132,GO:0045143,GO:0045503,GO:0045505,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051959,GO:0061982,GO:0070192,GO:0071840,GO:0071944,GO:0072384,GO:0072687,GO:0097159,GO:0097367,GO:0098813,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1901265,GO:1901363,GO:1902494,GO:1903046,GO:1903047,GO:1990574,GO:1990758,GO:1990939
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5812.13287.1prot_H-elongata_contig5812.13287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5812 286..1931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.6709797-CDS-H-elongata_contig5812:285..3751622930942.6709797-CDS-H-elongata_contig5812:285..375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 286..375 -
1691679634.3689883-CDS-H-elongata_contig5812:285..3751691679634.3689883-CDS-H-elongata_contig5812:285..375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 286..375 -
1622930942.6895678-CDS-H-elongata_contig5812:679..7761622930942.6895678-CDS-H-elongata_contig5812:679..776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 680..776 -
1691679634.3816786-CDS-H-elongata_contig5812:679..7761691679634.3816786-CDS-H-elongata_contig5812:679..776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 680..776 -
1622930942.7030554-CDS-H-elongata_contig5812:1145..12651622930942.7030554-CDS-H-elongata_contig5812:1145..1265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 1146..1265 -
1691679634.3895574-CDS-H-elongata_contig5812:1145..12651691679634.3895574-CDS-H-elongata_contig5812:1145..1265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 1146..1265 -
1622930942.7204146-CDS-H-elongata_contig5812:1507..15991622930942.7204146-CDS-H-elongata_contig5812:1507..1599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 1508..1599 -
1691679634.397549-CDS-H-elongata_contig5812:1507..15991691679634.397549-CDS-H-elongata_contig5812:1507..1599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 1508..1599 -
1622930942.7373445-CDS-H-elongata_contig5812:1790..19311622930942.7373445-CDS-H-elongata_contig5812:1790..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 1791..1931 -
1691679634.4076304-CDS-H-elongata_contig5812:1790..19311691679634.4076304-CDS-H-elongata_contig5812:1790..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5812 1791..1931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5812.13287.1

>prot_H-elongata_contig5812.13287.1 ID=prot_H-elongata_contig5812.13287.1|Name=mRNA_H-elongata_contig5812.13287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
HPPLKQRLAEVSAFREQHENLRGVLQTVLRDDDRSAVAEVMTRDSLFAYA
RFPGSDVLDLGADGARGWSEAREAYDRRVDGLEARVSALLEAKLREAKTA
EEMFRVFAKFNPLFVRPRIRASISQFQHELIGHVREAVSAIQDKFRHRYE
VSEAKALSSLRDIPPVAGKILWARQMERQL
back to top

mRNA from alignment at H-elongata_contig5812:286..1931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5812.13287.1 ID=mRNA_H-elongata_contig5812.13287.1|Name=mRNA_H-elongata_contig5812.13287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1646bp|location=Sequence derived from alignment at H-elongata_contig5812:286..1931- (Himanthalia elongata Himel1 dioecious)
CACCCGCCTCTGAAGCAGAGACTGGCGGAAGTGTCTGCGTTCAGAGAGCA
GCACGAGAACCTGCGGGGCGTGCTGCAAACCGTTCTAAGGGACGACGATA
GATCGGCCGTTGCGGAGGTGATGACGCGGGATTCGCTCTTCGTTTCTTCC
TCTCGTCCAAAACCAGAGTCGTGTTTCGGTATGTTATGGTACGATACGGG
ACGGTGCGATACGAGACGATGTTGTTAGTCCAGTTGCTACGGACCGACCA
GAGCTTGGTGTTCGCACTCGCGGTCATGCATCTCATATAATCCCACTGGC
CGATGGGGCGATGGGACGTGCAGGTGGATGAGGCATATGCCCGATTTCCG
GGGTCGGACGTGCTGGACCTGGGAGCGGATGGGGCAAGGGGTTGGAGTGA
GGCCAGGGAGGCTTACGACAGAAGGTAGCGTGCTCTAGTCTAAAACACTA
ATGTACAAAGTTGTCGAGTATGCTATGTGTTCCAGGTGTGCACGGTGAAG
CACCTAGCACCCAGCATCTTGAGGATGGAAGCAACCGCGTGAAGCAGGGA
CCAAGGTTCGTGTCCCGCGAGAGCCCGCTGTTGGTATCCTTCGGCCTCGG
ATAAACCTGCCTTCTCGTTGTGTTTGATTCCTTTCGCTTGGCACTTACTG
GTGACTCATGGCGCAGGGTGGACGGTCTCGAGGCGAGGGTGTCGGCCCTA
CTTGAGGCAAAGCTGCGGGAGGCAAAGACCGCGGAGGAGATGTTCCGTGT
GTTCGCGAAGTTTAACCCGCTCTTCGTGAGACCGAGGTAAGAAAATCGTC
ACTAGCAGCGCACCAGGGCACTCCGCTATGCTGTGCCGCACCGCACCGCG
TCCAATTACCGAAGCTATTCTGGGAAGAGTCGATGATGCCAGCAGCAGTC
TAGTTAAGTCAAGCAGAGACGCTACGGCGCAAGAGGTTCACGCTTCGCAC
AGGGAAGGGAGGTTGGGGGGAGGGGAGGGGGTGGTTGATTGTTTTCCCGA
ATCCGATCGGATTGCGGCTGGCGTTGTCGCCTATCCCCTCTTGCCTTGAG
CGTGAATGCTTCGGAAGTCCCTAAGTGCATGTGTTCTTTTCATGCTGTTT
GTTTTACGTTGTATTTCGTGTAACTTTGTATCCGGCACTCCGCTGTGGAG
CGCAGGATCCGCGCGTCTATCTCTCAGTTTCAACATGAGCTCATTGGACA
CGTGCGAGAGGCGGTGTCGGCCATACAAGACAAGTTCCGGCATCGATACG
AGGTATTTTCCGTGACGCGCTCCGGGGAAATCGTTTTATCGATGACTGGG
TGTCTCTCGGGTTATCCTCCGCCCCGGCTTGAACGGTTCCGACCTATCTA
TAGGCAGACGAAGAGGTTGATGCGGTGAGGAATACGGTGTGCCTTCCGTG
ATGGAAAGAACATTCAAGGATAATACCCACCAGTTCGGTATAGTTCTGTT
TATTGTCTGATGGCATGCAGTATGGTGCCGCAAGGTATATACAGTACGAG
TTTTCCCGTGTGTGTTGGCGTTTTTCTACGCCCGGGATTTGACCGTGTCT
TCACAGGTTTCAGAAGCGAAGGCGTTATCGTCGCTGAGGGACATCCCTCC
CGTGGCCGGGAAGATCTTGTGGGCGAGACAGATGGAGAGGCAGCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5812:286..1931-

>mRNA_H-elongata_contig5812.13287.1 ID=mRNA_H-elongata_contig5812.13287.1|Name=mRNA_H-elongata_contig5812.13287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig5812:286..1931- (Himanthalia elongata Himel1 dioecious)
CACCCGCCTCTGAAGCAGAGACTGGCGGAAGTGTCTGCGTTCAGAGAGCA
GCACGAGAACCTGCGGGGCGTGCTGCAAACCGTTCTAAGGGACGACGATA
GATCGGCCGTTGCGGAGGTGATGACGCGGGATTCGCTCTTCCACCCGCCT
CTGAAGCAGAGACTGGCGGAAGTGTCTGCGTTCAGAGAGCAGCACGAGAA
CCTGCGGGGCGTGCTGCAAACCGTTCTAAGGGACGACGATAGATCGGCCG
TTGCGGAGGTGATGACGCGGGATTCGCTCTTCGCATATGCCCGATTTCCG
GGGTCGGACGTGCTGGACCTGGGAGCGGATGGGGCAAGGGGTTGGAGTGA
GGCCAGGGAGGCTTACGACAGAAGGCATATGCCCGATTTCCGGGGTCGGA
CGTGCTGGACCTGGGAGCGGATGGGGCAAGGGGTTGGAGTGAGGCCAGGG
AGGCTTACGACAGAAGGGTGGACGGTCTCGAGGCGAGGGTGTCGGCCCTA
CTTGAGGCAAAGCTGCGGGAGGCAAAGACCGCGGAGGAGATGTTCCGTGT
GTTCGCGAAGTTTAACCCGCTCTTCGTGAGACCGAGGGTGGACGGTCTCG
AGGCGAGGGTGTCGGCCCTACTTGAGGCAAAGCTGCGGGAGGCAAAGACC
GCGGAGGAGATGTTCCGTGTGTTCGCGAAGTTTAACCCGCTCTTCGTGAG
ACCGAGGATCCGCGCGTCTATCTCTCAGTTTCAACATGAGCTCATTGGAC
ACGTGCGAGAGGCGGTGTCGGCCATACAAGACAAGTTCCGGCATCGATAC
GAGGATCCGCGCGTCTATCTCTCAGTTTCAACATGAGCTCATTGGACACG
TGCGAGAGGCGGTGTCGGCCATACAAGACAAGTTCCGGCATCGATACGAG
GTTTCAGAAGCGAAGGCGTTATCGTCGCTGAGGGACATCCCTCCCGTGGC
CGGGAAGATCTTGTGGGCGAGACAGATGGAGAGGCAGCTCGTTTCAGAAG
CGAAGGCGTTATCGTCGCTGAGGGACATCCCTCCCGTGGCCGGGAAGATC
TTGTGGGCGAGACAGATGGAGAGGCAGCTC
back to top