mRNA_H-elongata_contig58111.13286.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: D8LDC6_ECTSI (Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDC6_ECTSI) HSP 1 Score: 182 bits (462), Expect = 4.610e-56 Identity = 81/105 (77.14%), Postives = 92/105 (87.62%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
RWALWYDN+KLKAATETW +NLKHI+AF+TV++FWALFNNV PPSML++ SNYSVFKEGVKPMWED N QGGK VLT+KGED+ QLD WWL VL+AIGE LE
Sbjct: 24 RWALWYDNAKLKAATETWADNLKHILAFETVQEFWALFNNVMPPSMLSVQSNYSVFKEGVKPMWEDTANRQGGKFVLTVKGEDLPQLDQWWLHAVLSAIGETLES 128
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A1V9YGZ3_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGZ3_9STRA) HSP 1 Score: 145 bits (365), Expect = 5.020e-41 Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 28 PFPLLPSPPGITRWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
P ++P P +W LWYDN K K ATETWEENLK I FDTVEDFW LFNNV PP+ L+ SNY +FKEG++PMWED N +GGK +LT + +LD W+ +LA IGE LED
Sbjct: 40 PAEIVPKHPLQHKWVLWYDNPKKKLATETWEENLKKIYTFDTVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALED 156
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A067CRQ2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRQ2_SAPPC) HSP 1 Score: 142 bits (359), Expect = 2.900e-40 Identity = 68/126 (53.97%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 1 EKWSVVVLNPFPLLPSPPGITRWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
E+ + +V P L P P +W LWYDN K K ATE+WEENLK I F+TVEDFW LFNNV PP+ L+ SNY +FKEG++PMWED N +GGK +LT + +LD W+ +LA IGE LED
Sbjct: 19 EEAAPIVAVPMELGPKHPLQHKWVLWYDNPKKKLATESWEENLKLIYTFETVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRPRLDDSWMHVMLALIGEALED 144
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A485L311_9STRA (Aste57867_15132 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L311_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.270e-39 Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
RW LWYDN K K E+WEENLK + +FDTVEDFW +FNN+ PPS L+ SNY +FKEG++PMWED N +GGK VLT + + +LD W+ +LA IGE LED
Sbjct: 39 RWVLWYDNPKKKLPNESWEENLKVVYSFDTVEDFWCMFNNILPPSKLSTGSNYHLFKEGIRPMWEDPINAKGGKWVLTNQRQRRARLDDCWMHTMLALIGECLED 143
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: W4G8U0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8U0_9STRA) HSP 1 Score: 140 bits (352), Expect = 4.470e-39 Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
RW LWYDN K K A E+WEENLK + FDTVEDFW +FNN+ PP+ L + SNY +FKEG++PMWED N +GGK VLT + +LD W+ +LA IGE LED
Sbjct: 51 RWVLWYDNPKKKLANESWEENLKVVYTFDTVEDFWGMFNNILPPTKLLVGSNYHLFKEGIRPMWEDPINAKGGKWVLTNNRQRRARLDDAWMNTMLALIGECLED 155
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A024UKG8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKG8_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.540e-38 Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
+W LWYDN K K A+ETWEE+LK + +FDTVEDFW +FNN+ PP+ L + SNY +FKEG++PMWED N +GGK VLT + +LD W+ +LA IGE LED
Sbjct: 51 KWVLWYDNPKKKLASETWEESLKVVYSFDTVEDFWGMFNNILPPTKLHVGSNYHLFKEGIRPMWEDPINAKGGKWVLTNNRQRRPRLDDAWMNTMLALIGECLED 155
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A6G0X5M7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5M7_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.730e-37 Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
RW LWYDN K K E+WEENLK + FDTVEDFW +FNN+ PP+ L SNY +FK G++PMWED N +GGK VLT + +LD W+ +LA IGE LED
Sbjct: 58 RWVLWYDNPKKKLPNESWEENLKTVYTFDTVEDFWCMFNNILPPTKLASGSNYHLFKHGIRPMWEDPINAKGGKWVLTNSRQRRARLDDAWMHTMLALIGECLED 162
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A7S2JX99_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JX99_9STRA) HSP 1 Score: 133 bits (334), Expect = 9.620e-37 Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTL--KGEDMGQLDHWWLRGVLAAIGEILED 378
+W LWYDN + A +W+ENLK+ FDT E+FW +FNNVKP S L+ NSNY +FK+GV+PMWED N +GGK VLT+ K G+ D WWL VLA +GE L++
Sbjct: 17 KWVLWYDNPRQAAPGASWKENLKYCGEFDTAENFWRIFNNVKPASQLSTNSNYHIFKKGVEPMWEDPMNAKGGKWVLTIPKKESKAGRCDEWWLHTVLAVVGETLDE 123
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A8K1FLQ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ1_PYTOL) HSP 1 Score: 133 bits (335), Expect = 1.280e-36 Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 64 RWALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILED 378
RW LWYDN K + + ETWEENLK+I FDTVEDFW L+NNV P+ L++ SNY +FKEG++PMWED N +GGK + T +LD WL +L+ IGE L D
Sbjct: 41 RWTLWYDNPKKRNSAETWEENLKNIFTFDTVEDFWCLYNNVLTPTKLSVGSNYHLFKEGIRPMWEDPINAKGGKWIFTNARSRRARLDECWLHVMLSLIGESLHD 145
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Match: A0A836CHN5_9STRA (Translation initiation factor eIF 4e-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN5_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.430e-36 Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 67 WALWYDNSKLKAATETWEENLKHIMAFDTVEDFWALFNNVKPPSMLTMNSNYSVFKEGVKPMWEDKTNCQGGKSVLTLKGEDMGQLDHWWLRGVLAAIGEILE 375
W LW+DN KLK E+WE+ LK+IM+F TVEDFW L+ N+ P S + SNYSVFK G+KPMWED N +GGK VLT+ + +D WWL +LA IG LE
Sbjct: 39 WTLWFDNPKLKKPEESWEDTLKNIMSFSTVEDFWCLYGNILPASRIPSGSNYSVFKHGIKPMWEDPQNAKGGKWVLTVGRGERKHMDEWWLHSLLAVIGGTLE 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58111.13286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58111.13286.1 >prot_H-elongata_contig58111.13286.1 ID=prot_H-elongata_contig58111.13286.1|Name=mRNA_H-elongata_contig58111.13286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp EKWSVVVLNPFPLLPSPPGITRWALWYDNSKLKAATETWEENLKHIMAFDback to top mRNA from alignment at H-elongata_contig58111:641..1874- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58111.13286.1 ID=mRNA_H-elongata_contig58111.13286.1|Name=mRNA_H-elongata_contig58111.13286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1234bp|location=Sequence derived from alignment at H-elongata_contig58111:641..1874- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58111:641..1874- >mRNA_H-elongata_contig58111.13286.1 ID=mRNA_H-elongata_contig58111.13286.1|Name=mRNA_H-elongata_contig58111.13286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig58111:641..1874- (Himanthalia elongata Himel1 dioecious)back to top |