mRNA_H-elongata_contig58093.13284.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE) HSP 1 Score: 243 bits (621), Expect = 4.790e-69 Identity = 111/222 (50.00%), Postives = 150/222 (67.57%), Query Frame = -1
Query: 298 FWRWALEHKVVDAGSSLCAPLFTHSHRIPGRHYLSDASLDAVGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLM 963
F+RWA+EH+++ AG SL AP + R P R YLSDAS DA+GG+CPE +VFWRY L + A LK ++ + INLLEL GM MTAW++ ++ D+P+ DPVL+RGDN +AV W NRCGGA+++RAC +MR+LGRLEI +W + AKHIPG +N LADGISRWP + + V R TN WR+ +G G + +L++ + D TLW+LM
Sbjct: 1333 FFRWAIEHELLTAGESLNAPCYGVVKRQPKRLYLSDASFDAIGGFCPEKRVFWRYDLPLDFATELKQKAARRETCSVTINLLELVGMVMTAWVMHSLVGDRPKNNNDPVLMRGDNMAAVTWSNRCGGARDKRACLMMRMLGRLEISGEWSYEAKHIPGVKNTLADGISRWPRSELADRVQRFTNTNDWREIPLGSRGEKVCSFVLQKKNLQPRHDRTLWNLM 1554
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KVY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY8_9PHAE) HSP 1 Score: 150 bits (380), Expect = 4.420e-42 Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = -1
Query: 298 LLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLM 636
++RGDN SAV+W+NRCGG+++RRA LMRLLGR+EI N WCHVAKHIPG EN LADGISRW +E V NV RLT+ WR QDIG + R E +L+E + +D +WS M
Sbjct: 1 MMRGDNVSAVSWVNRCGGSRDRRAGLLMRLLGRMEIENGWCHVAKHIPGRENTLADGISRWKSEDVEVNVERLTHSNNWRMQDIGDTARETIEMILQEKLQNQRMDGLVWSRM 113
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE) HSP 1 Score: 149 bits (375), Expect = 2.730e-36 Identity = 82/227 (36.12%), Postives = 124/227 (54.63%), Query Frame = -1
Query: 286 FWRWALEHKVVDAGS-SLCAPLFTHSHRIPGRHYLSDASLDAVGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLMKQTT 963
FWR + G L APL + P R +SDAS D +GG+C E +WR ++ A L+ + + + +N+ EL GM +TAW + + +P G +L+RGDN SAV W+N+C GAK R+ TLMR+LG LE+R++W AKHI G N LADGISRW + + N+ ++ W++Q +G +I +L + E+ L L + +Q +
Sbjct: 804 FWRKVMAMATGPDGIVKLEAPLLCSFLQAPSRTLVSDASGDGMGGFCLESGQWWRIDFTDDIRARLRNRVFSRD--DLSMNVFELLGMVVTAWALTVQAGVKPEYPGQSILMRGDNMSAVHWVNKCRGAKEPRSGTLMRMLGCLEMRSEWRFRAKHIKGVANTLADGISRWKHDEIASNLHSYRPDIRWQEQHLGQEALDITFAVLASSSSEDQLRTRLNDVTRQVS 1028
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE) HSP 1 Score: 134 bits (337), Expect = 3.570e-32 Identity = 68/191 (35.60%), Postives = 107/191 (56.02%), Query Frame = -1
Query: 268 VGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLMKQTTQT*GSP 840
+GGYC E +WR ++ A L+ + + + +N+ EL GM MTAW + + D+P G VL+RGDN SAV W+N+C GAK R+ LMR++G LE+RN+W AKHI G N LA+GISRW + + + ++ W++Q +G ++ +L + ++ L L ++ +Q SP
Sbjct: 1 MGGYCLETGWWWRIDFSADVRARLRNRV--CKRDDLSMNVFELLGMVMTAWALTVHAGDRPEYPGQSVLMRGDNMSAVHWVNKCRGAKEPRSGALMRMMGCLEMRNEWRFRAKHIKGLANTLANGISRWKHDEITAKLRSYRPDICWQEQHLGQEALDLTSAVLDSSSSDDQLQSRLNAVTRQVEIDTSSP 189
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5L2H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H9_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.620e-28 Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = -1
Query: 346 FWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCG--GAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLR 810
FWRY L + + ICIN+LEL M MTA+++ + D+P EG+ V++R DN SAV+W+ + G G K R LMR++G L+ WC +H+PG EN +ADGI+RW E + +NV + W+ Q++ + + +LR
Sbjct: 6 FWRYELPEEVQGRTIRARQKGEGDFICINVLELMTMVMTAYVMVISRGDKPEREGEAVMMRADNESAVSWVKKWGWEGKKKARIGALMRMMGALKTIGGWCFQTRHVPGVENRVADGITRWKEEEIADNVQSESPGTRWQVQELKAEEQQLCAEILR 162
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM1_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.150e-14 Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = -1
Query: 733 FWRWALEHKVVDAGSSLCAPLFTHSHRIPGRHYLSDASLDAVGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKI 963
FW+WAL + G SL A H R P R +LSDAS A+GGYCPE+K+FWRY +D +L+A LK +++ I
Sbjct: 416 FWKWALNQPLALRGESLSASFLLHVKRAPSRLHLSDASFTAIGGYCPELKIFWRYTIDSSLSAELKPKAQEKETSDI 492
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5K7E5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E5_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 4.510e-13 Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = -1
Query: 487 ICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKW-CHVAKHIPGA 735
+ IN+LEL GM M AW++ + QP E GD V LRGDN +A AWI RC G R+ L+RLLG LE+ + W H + GA
Sbjct: 27 VSINVLELLGMVMGAWMLVLGRSHQPVEAGDCVRLRGDNEAATAWIERCRGGLEPRSGALVRLLGALEVASGWHFHATXMVMGA 110
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JQT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT6_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.880e-9 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = -1
Query: 541 MCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLG 705
M MTAW+VQM+L+D+P EEG VL+RGDN SAV+W + G + +MRL+G
Sbjct: 1 MFMTAWVVQMILKDRPVEEGQSVLMRGDNVSAVSWTQQVWGVARQARSLIMRLMG 55
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JMW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW9_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 3.380e-8 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = -1
Query: 457 LLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNK---WCHVAK--HIPGAENVLADGISR 636
++RGDN SAV+W+NRCGG+ +RRA LMRLLGR+EI W + ++ IP L DG R
Sbjct: 1 MMRGDNVSAVSWVNRCGGSSDRRAGLLMRLLGRMEIETDGVTWRNTSRDARIPSRTGYL-DGSQR 64
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KKV1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV1_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 2.540e-7 Identity = 44/96 (45.83%), Postives = 50/96 (52.08%), Query Frame = 2
Query: 548 SLMSVQARLFFAPPHRLIHATALALSPRRSTGSPSSRGWSRSTICTSQAVMHIPASSKRLMQIFRALVFSDCVFR--EAARLGSRA*RQNTFISGQ 829
SL ARL PPH L+ TA LSPR +T PSS G S ICT+ AVM++PASS RL I R+ V C A S Q F SGQ
Sbjct: 2 SLTMRLARLSRDPPHLLVQLTADTLSPRINTDCPSSIGLSFKIICTTHAVMNMPASSNRL--IVRSAVSFSCALHLSSADNDDSIVYLQKVFSSGQ 95 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58093.13284.1 >prot_H-elongata_contig58093.13284.1 ID=prot_H-elongata_contig58093.13284.1|Name=mRNA_H-elongata_contig58093.13284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp MRLQRVSSNISSGQFSRNRCSNMFLPDGPMSCWRQPSSLVSRVTFSWTRSback to top mRNA from alignment at H-elongata_contig58093:29..1071+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58093.13284.1 ID=mRNA_H-elongata_contig58093.13284.1|Name=mRNA_H-elongata_contig58093.13284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig58093:29..1071+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58093:29..1071+ >mRNA_H-elongata_contig58093.13284.1 ID=mRNA_H-elongata_contig58093.13284.1|Name=mRNA_H-elongata_contig58093.13284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig58093:29..1071+ (Himanthalia elongata Himel1 dioecious)back to top |