mRNA_H-elongata_contig58058.13279.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: D8LCE0_ECTSI (Glutamate synthase (NADH/NADPH-dependent), C-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE0_ECTSI) HSP 1 Score: 457 bits (1176), Expect = 4.320e-149 Identity = 228/259 (88.03%), Postives = 250/259 (96.53%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDV+IAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVA+QDP+LR+KFTG+PEHVVN+FYLMAEE+RE+MA +GFR++EEM+GRVD+LEINP+VLHYKSRGLDLSALLTPAT+LNENHSGV+KSF+QDHGI+ RID+RIME AKDALE K PVSLKM I+NLDRTTGTILS IST+ G
Sbjct: 787 VSEVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVVIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVATQDPILRKKFTGKPEHVVNFFYLMAEEVREMMATMGFRSVEEMIGRVDRLEINPDVLHYKSRGLDLSALLTPATSLNENHSGVSKSFEQDHGIDQRIDFRIMEEAKDALESKTPVSLKMPINNLDRTTGTILSNTISTKYG 1045
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A835YLR4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR4_9STRA) HSP 1 Score: 439 bits (1128), Expect = 3.770e-140 Identity = 219/259 (84.56%), Postives = 243/259 (93.82%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRD+ IAALLGAEE+AFSTAPLIAMGC+MMRKCHLNTCPVGVA+QDP LRRKFTG+PEHVVN+FYLMAEE+R +MA++GFRT+EEMVGRVD LE+NP+VLHYKSRGLDL+ LLTPA++LNE HSG+TK +QDHG+ RID+RI+ AKDALE+K PVSL+M ISNLDRTTGTILSY ISTR G
Sbjct: 1074 VSEVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDIAIAALLGAEEFAFSTAPLIAMGCVMMRKCHLNTCPVGVATQDPELRRKFTGKPEHVVNFFYLMAEELRGLMAEMGFRTVEEMVGRVDMLEVNPDVLHYKSRGLDLTPLLTPASSLNEAHSGLTKKMEQDHGLAARIDHRIIAAAKDALEKKTPVSLEMPISNLDRTTGTILSYEISTRYG 1332
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S2V0N1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N1_9STRA) HSP 1 Score: 378 bits (970), Expect = 1.010e-117 Identity = 188/259 (72.59%), Postives = 221/259 (85.33%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKAKADHIT+SGHDGGTGAA WT +KGAGLPWELG+AEAQQTLVLNDLRSRV+LQTDGQ++NGRD IAALLGAEE F+T PLIA+GCIMMRKCHLNTCPVG+A+QDPVLR KF G+PEHVVNYF+L+AEEIRE MA+LGFRT EEM+GR D LE++ +HYKS+GLDLS LL A +LN N+SGV K +QDHG++ ID ++E A+ AL+ + V L+ I+NLDRTTGTILSYNIS + G
Sbjct: 1109 VSEVGVGVVAAGVAKAKADHITISGHDGGTGAAAWTGVKGAGLPWELGIAEAQQTLVLNDLRSRVKLQTDGQIRNGRDCTIAALLGAEEMGFATGPLIALGCIMMRKCHLNTCPVGIATQDPVLRAKFKGQPEHVVNYFFLLAEEIRENMAKLGFRTFEEMIGRSDLLEVDRSAMHYKSKGLDLSPLLQTAPSLNPNNSGVYKVMEQDHGLDSVIDNELIEAARPALDHGEKVRLEYPITNLDRTTGTILSYNISKKFG 1367
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S1GQI6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQI6_CYCTE) HSP 1 Score: 355 bits (911), Expect = 3.440e-117 Identity = 179/259 (69.11%), Postives = 215/259 (83.01%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKA ADHITVSGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN LR RV+LQTDGQLK GRDV++A LLGAEE+ F+TAPLIAMGCIMMRKCHLNTCPVGVA+QD LRRKF+G PEHV+NYF+LMAEEIREIMA+LG+R++ EM+G+ LE+NP LHYKSRGLDLS LLTPA+ LN + +GV Q HG++ D ++E A ALE + PV ++ +++N++RT GT+LSY +S R G
Sbjct: 96 VSEVGVGVVAAGVAKALADHITVSGHDGGTGAAAWTGLKGAGLPWELGLAETQQTLVLNGLRDRVKLQTDGQLKTGRDVVVACLLGAEEFGFATAPLIAMGCIMMRKCHLNTCPVGVATQDEELRRKFSGHPEHVMNYFFLMAEEIREIMAKLGYRSMSEMIGQTQHLEVNPRGLHYKSRGLDLSPLLTPASDLNPS-AGVRNLTTQYHGLDVAKDNELIEKAMPALESQTPVVIEDEVTNINRTLGTMLSYQVSKRYG 353
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: Q40601_OCHDN (NAD(P)H-dependent glutamate synthase (Fragment) n=1 Tax=Ochromonas danica TaxID=2986 RepID=Q40601_OCHDN) HSP 1 Score: 344 bits (882), Expect = 6.290e-115 Identity = 170/259 (65.64%), Postives = 219/259 (84.56%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKAKADHIT+SG DGGTGAA WT IKGAGLPWELG+AEAQQTLV+N+LR RVRLQTDGQ+K GRDV+IAA LGAEE+ F+TAPLI +GCIMMRKCHLNTCPVG+A+QDP+LR+KF+G+PE+V+N+F+L+AEE+RE MA+LG R+++E+VGR D LE++ +VLH K++GLDLS LLT + LN S + K+ Q+H + +D +I+ A+ ALEE PV+L+ ++NL+RT GT+LSY+IS + G
Sbjct: 27 VSEVGVGVVAAGVAKAKADHITISGGDGGTGAAAWTGIKGAGLPWELGLAEAQQTLVINNLRDRVRLQTDGQIKTGRDVVIAACLGAEEFGFATAPLITLGCIMMRKCHLNTCPVGIATQDPLLRKKFSGKPEYVINFFFLLAEEVREYMAELGVRSLDELVGRADLLEVDQQVLHEKNKGLDLSGLLTTSYELNPK-SPLKKTTQQNHMLESALDQQIIADARPALEEGVPVTLEYPVTNLNRTVGTMLSYHISKKYG 284
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A6U4IAI1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IAI1_9STRA) HSP 1 Score: 342 bits (877), Expect = 5.390e-113 Identity = 167/247 (67.61%), Postives = 207/247 (83.81%), Query Frame = 1
Query: 37 VAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VAKAKADHI +SGHDGGTGAA WT +KGAGLP+ELGVAEAQQTLVLNDLRSRVRLQTDGQLK RDV++A+LLGAEE+ FSTAPLIA+GCIMMRKCHLNTCPVG+A+QDP LR KF G+PEHV+N+F+LMAE++RE MA LGFRT++EMVGR DKL +N +VLHYKS+G+++ ALLTPA+ LN +G K+ +QDH + +D +M+ A ALE + V + + ++NL+RT GT+LS+ ISTR G
Sbjct: 1 VAKAKADHIVISGHDGGTGAAAWTGVKGAGLPFELGVAEAQQTLVLNDLRSRVRLQTDGQLKTARDVVVASLLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFHGQPEHVINFFWLMAEKVREHMADLGFRTMDEMVGRTDKLAVNNDVLHYKSKGMNVDALLTPASQLNPG-AGTIKTMEQDHELELALDNELMKQAAPALESGEKVEINLPVNNLNRTVGTMLSHQISTRYG 246
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S2YAK0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YAK0_9STRA) HSP 1 Score: 347 bits (890), Expect = 8.120e-111 Identity = 173/259 (66.80%), Postives = 213/259 (82.24%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKA +DHIT+SGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN LR RV+LQTDGQLK GRDV IA LLGAEEY F+TAPL+ MGCIMMRKCHLNTCPVG+A+QD LR+KF+G+PEHV+NYF+L+AEE+REIMA+LG+RT+EEM+G+ LE+N + HYKSRGLDLS LL PA+ LN + +G+ Q HG++ D +E AK+ALE K PV ++ +I N++RT GT+LSY +S + G
Sbjct: 360 VSEVGVGVVAAGVAKALSDHITISGHDGGTGAAAWTGVKGAGLPWELGLAETQQTLVLNGLRDRVKLQTDGQLKTGRDVAIACLLGAEEYGFATAPLVTMGCIMMRKCHLNTCPVGIATQDEELRKKFSGQPEHVMNYFFLLAEEVREIMAKLGYRTMEEMIGQTQNLEMNKKGQHYKSRGLDLSPLLIPASELNPS-TGIRNLTGQYHGLDIAKDNDFVEKAKEALENKTPVVIEDEIENINRTLGTMLSYQVSKKHG 617
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S1ZND1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZND1_TRICV) HSP 1 Score: 342 bits (876), Expect = 1.650e-110 Identity = 171/259 (66.02%), Postives = 213/259 (82.24%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKA +DHITVSGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN+LR RV+LQTDGQLK GRDV IA LLGAEE+ F+TAPLI MGCIMMRKCHLNTCPVGVA+QD LR+KF+G+PEHV+NYF+L+AEE+REIMA+LG++T+++M+G+ L++N HYKSRGLDL+ LLTPA+ LN +G+ + +Q HG++ D E AKDAL+ PV ++ I+NL+RT GT+LSY +S + G
Sbjct: 399 VSEVGVGVVAAGVAKALSDHITVSGHDGGTGAAAWTGVKGAGLPWELGLAETQQTLVLNNLRHRVKLQTDGQLKTGRDVAIACLLGAEEFGFATAPLIVMGCIMMRKCHLNTCPVGVATQDEELRKKFSGQPEHVMNYFFLLAEEVREIMAKLGYKTMKDMIGQTQHLDVNKRGQHYKSRGLDLTPLLTPASELNPG-AGIHWTTEQYHGLDIAKDNEFTEKAKDALDNGNPVVIEDVITNLNRTAGTMLSYQVSKKYG 656
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A0W8BVP9_PHYNI (Glutamate synthase 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8BVP9_PHYNI) HSP 1 Score: 348 bits (893), Expect = 5.680e-110 Identity = 173/259 (66.80%), Postives = 213/259 (82.24%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKAK+DHITVSGHDGGTGAAVWT +K GLPWELG+AE QQTLVLNDLRSRV+LQTDGQLK GRDV++AALLGAEE+ F+T PLIA+GCIMMRKCHLNTCPVGVA+QDP LR+KF G+PEHVVN+ +++AEE+++ M +LGFR +++++GR D L++N + LHYKSR LDLS LL A+TLNE +GV K +QDH + ID R++E AK ALE K PV ++ +NLDRT G LS+ + R G
Sbjct: 497 VSEVGVGVVAAGVAKAKSDHITVSGHDGGTGAAVWTGVKNGGLPWELGLAETQQTLVLNDLRSRVKLQTDGQLKTGRDVMVAALLGAEEFGFATGPLIALGCIMMRKCHLNTCPVGVATQDPELRKKFQGQPEHVVNFMFMLAEEVQDYMRRLGFRKLDDLIGRADLLKVNQDALHYKSRKLDLSPLLINASTLNEG-AGVKKEMEQDHEVEKCIDMRLIEKAKAALENKTPVVVEDVATNLDRTLGATLSHEVCKRYG 754
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S2PI44_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PI44_9STRA) HSP 1 Score: 351 bits (900), Expect = 6.020e-110 Identity = 178/259 (68.73%), Postives = 212/259 (81.85%), Query Frame = 1
Query: 1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
VS+VGVGVVAAGVAKA ADHIT+SGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN LR RV+LQTDGQLK GRDV+IA LLGAEEY F+T PLIA+GCIMMRKCHLNTCPVG+A+QD LR+KF G PEHV+NYF+LMAEEIREIMA++G+RT+E+M+G+ LE+N LHYKSRGLDLS LLTPA+ LN + +G+ Q HG++ D ++E +KDALE PV +I+NL+RT GT+LSY IS R G
Sbjct: 644 VSEVGVGVVAAGVAKALADHITISGHDGGTGAAAWTGLKGAGLPWELGLAETQQTLVLNGLRDRVKLQTDGQLKTGRDVVIACLLGAEEYGFATGPLIALGCIMMRKCHLNTCPVGIATQDEELRKKFAGEPEHVMNYFFLMAEEIREIMAKMGYRTMEDMIGQTQHLEVNRRGLHYKSRGLDLSPLLTPASELNPS-AGIRNLNTQYHGLDLAKDNVLIEKSKDALENGTPVVFDEEINNLNRTCGTMLSYEISKRYG 901 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58058.13279.1 >prot_H-elongata_contig58058.13279.1 ID=prot_H-elongata_contig58058.13279.1|Name=mRNA_H-elongata_contig58058.13279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAback to top mRNA from alignment at H-elongata_contig58058:1056..3568- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58058.13279.1 ID=mRNA_H-elongata_contig58058.13279.1|Name=mRNA_H-elongata_contig58058.13279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2513bp|location=Sequence derived from alignment at H-elongata_contig58058:1056..3568- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58058:1056..3568- >mRNA_H-elongata_contig58058.13279.1 ID=mRNA_H-elongata_contig58058.13279.1|Name=mRNA_H-elongata_contig58058.13279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig58058:1056..3568- (Himanthalia elongata Himel1 dioecious)back to top |