prot_H-elongata_contig5804.13278.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5804.13278.1
Unique Nameprot_H-elongata_contig5804.13278.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length340
Homology
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BLAST of mRNA_H-elongata_contig5804.13278.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 9.300e-40
Identity = 132/389 (33.93%), Postives = 178/389 (45.76%), Query Frame = 0 
Query:    1 MLHAEEGLWLAERGMLAVHPPSRSEESDTDEISLAA----RSGRXXXXXXXTVASVTTGAKEAPVLSPSFSK----------------TLTLSSKVTTGPRFQQPAVFSAPATNSITVE-------------DSATTGKAGTISEAENRIVSLNSEFRIVEEKGVRGARARARAGGHRG-------AAPSISVEALHG-VLSRAGVPWECYRAYAELRRRSFVVRRRPEDTIGQDDKAPRAPSLSWFG-----EPPNAKRCAVAEATAGDGSHLFLPVTFHVYAP----NAAFQRREPGPPDFWLAVCRYGDPMPSHDELIYLAERHAEV---------WG--ARKDNKAGQAPGQGDGIRVYDGGGGDKKYACPSSVKRHAAIPAGKE 328
            MLHAEEGLWL ERGMLAVHP S + + + D    A+     SG         +   T  +   P ++                     T  + S      R   P    +P  + + +              ++A TG+ G       ++ +   E R  +  G +    R+R G  RG       AA S+SV  L+  VL+RAGVPWECYR YAEL+RRS+VVRR+PEDT+G DD APRA  LSWF      +  N K    A  T+   S L  PVTFHVY+     +++F++R+PGPPD  + VCR+GDPMP H  L+ L E HA +         W    R+D+ AG     G      D G G  +               G+E
Sbjct:   73 MLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAELSPIDSGVILTGESQHSLDPVASGETARTGQGGGC----RKVPTAAKEGR--QRAGCK----RSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSSL--PVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRE 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5804.13278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI9.300e-4033.93tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..130
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 231..276

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5804contigH-elongata_contig5804:7645..9575 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5804.13278.1mRNA_H-elongata_contig5804.13278.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5804 7235..9600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5804.13278.1 ID=prot_H-elongata_contig5804.13278.1|Name=mRNA_H-elongata_contig5804.13278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
MLHAEEGLWLAERGMLAVHPPSRSEESDTDEISLAARSGRGGGGGSGTVA
SVTTGAKEAPVLSPSFSKTLTLSSKVTTGPRFQQPAVFSAPATNSITVED
SATTGKAGTISEAENRIVSLNSEFRIVEEKGVRGARARARAGGHRGAAPS
ISVEALHGVLSRAGVPWECYRAYAELRRRSFVVRRRPEDTIGQDDKAPRA
PSLSWFGEPPNAKRCAVAEATAGDGSHLFLPVTFHVYAPNAAFQRREPGP
PDFWLAVCRYGDPMPSHDELIYLAERHAEVWGARKDNKAGQAPGQGDGIR
VYDGGGGDKKYACPSSVKRHAAIPAGKEDRRVSEAMERS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024337tRNA_splic_suSen54