prot_H-elongata_contig58014.13275.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58014.13275.1
Unique Nameprot_H-elongata_contig58014.13275.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length253
Homology
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A535S533_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535S533_9CHLR)

HSP 1 Score: 87.8 bits (216), Expect = 4.960e-16
Identity = 81/262 (30.92%), Postives = 117/262 (44.66%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRLLT----RQLTLNHVAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLW------NIMKFHQVLGHPAEQITRKTARMAG-VQLSRIWQSCVHCSESRVRRYAVPKP---TENRADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSDA 249
            WV DSG+T+H+T         T  P    +E A  T +  +G G++RL       +LTL +V ++P  G +N+LS   L +   T       A L R +          LQ     L    R +V   + +   P  TA+AAT   +       N  K+HQ LGH   ++ +    +AG V  +     C  C   +     + KP    + RA R    +  DL GP   T  GG R+ M  IDD++R+KMV FLK KS+A
Sbjct:  312 WVLDSGSTNHITGRRDNFISGTFKPIKRSLEMADRTTVEALGIGNVRLRLYNPEHELTLQNVLYLPQSGNNNLLSMHLLAEKGITAKMDNKNAQLYRGKT---------LQ---ATLRKINRLYVLEGHTIK--PEETAMAATTNDIDDNKDNNNARKWHQRLGHAPARVIQAIPELAGTVSTTTTKTICESCIMGKF----IRKPFQLLQRRATRPLELVHTDLCGPMETTSTGGARYFMTFIDDYSRYKMVYFLKKKSEA 555          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A177VM55_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VM55_9BASI)

HSP 1 Score: 77.0 bits (188), Expect = 2.410e-12
Identity = 72/270 (26.67%), Postives = 128/270 (47.41%), Query Frame = 0
Query:    1 FWVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRLLTRQ---LTLNHVAHVPN-LGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNI----MKFHQVLGHPAEQITRKTARMAGVQ-LSRIWQS---CVHCSESRVRRYAVPK--PTENRADRRTVRLFFDLLGPFHVTP---LGGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL 253
            F++ D+ +T H+ +    L ++  AP G  +E A G ++ V GYG L+++T +   +TL  VAH P+ +G  N++  KRLT+     +    A+A +    GG P                +R  V   + + +  T+  +AA  +G  +I    +  H+ LGH  E++ +  A    +  L +       C  C++ ++ R    +  P E RA R    +  D  GP  +     LGG+++ ++ +DDFT+   V+ L  KSDA  ++
Sbjct:  334 FFILDTASTRHIVKSKGNLTEYRFAPPGSGIECANGGMMAVEGYGTLKVITEEGNIITLQDVAHCPSTIG--NLIGGKRLTKA-GCRITFDDASATVVTAEGGHPV---------------MRAEVRGGSWVVRLHTIQDIAALVKGEPDIDPVAVHAHRCLGHVNEKVLKAAAASGLIPGLPKTLGDIGFCSACAQGKLARTPHHRLSPLE-RATRAMELIHVDTFGPERMQDSKSLGGSKYGLVLVDDFTKHVWVKLLLRKSDAIKSI 584          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: UPI001652DC39 (uncharacterized protein LOC100279596 isoform X1 n=2 Tax=Zea mays TaxID=4577 RepID=UPI001652DC39)

HSP 1 Score: 76.6 bits (187), Expect = 3.250e-12
Identity = 74/263 (28.14%), Postives = 112/263 (42.59%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRL--LTRQLTLNHVAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPR-------RGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRG--LWNIMKFHQVLGHPAEQITRKTARMAGVQLSRIWQSCVHCSESRVRRYAVPKPTENRADRRTVRLFF-DLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNA 252
            W+ DSGA DH+T     L  H      D V+ A G+ L +  +G   L   +R L L +V HVP L  H +LS  RL    +  + ++P    ++ R       RG         +  NGL  +    H  +      PP+   L A      LW     HQ LGHP+  I     R   +  +    S V  S  R + + +P    N      + L   D+ GP  +T +GG ++ +  +DD++R+  +  LK KSD  +A
Sbjct:  322 WLLDSGANDHLTSDLDRLTTHERFSGKDTVQVANGSGLSISHFGQSLLPGSSRPLYLRNVLHVPGLSNH-LLSAHRLASDNNVFIELHPNFFCVKDRVTQKTLLRG---------KSHNGLYPVPCSPHSAS------PPSRLGLTAVMASTDLW-----HQRLGHPSFSIVSSVLRSNKLACAPSQSSSVCDSCQRAKIHQLPFYKSNHVSSSPLELVHSDVWGPA-ITSVGGFKYYVSFLDDYSRYTWIYLLKRKSDVEHA 562          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 75.9 bits (185), Expect = 4.040e-12
Identity = 67/259 (25.87%), Postives = 111/259 (42.86%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRL---LTRQLTLNH---VAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNIMKFHQVLGHPAEQITRKTARMAGVQLSRIWQSCVHCSESRVRRYAV-PKPTENRADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL 253
            W+ DSGA+ HMT+    L D    P    V+   G  +PV G+G +     +  +  LN    V +VP LG +     K   + F+    V         R+ G       ++  NG+ E+ +R       C P+ P    ++     L     +H+ L H  ++  ++      +++    Q C  C   +  R     +    RA  + +    DL GP HVT LGG+++ ++  DDF+R+++V FLK K D    L
Sbjct:  151 WLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEVVWYVPKLGLNLFSIEKAAEKGFNFTANVDGCTF----RKNGR-VKLSGVRNVNGVYELHMRV------CTPEKPAYVHVSTADASL---QLWHERLCHQNKRHVQQVLNNHAIKVHAKEQFCTGCVFGKHHREGFHSRKYRPRAPGKLIHA--DLCGPMHVTSLGGSKYFLIFKDDFSRYRLVFFLKRKDDVAQCL 393          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A238FDN2_9BASI (BQ2448_2268 protein n=2 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FDN2_9BASI)

HSP 1 Score: 73.9 bits (180), Expect = 2.670e-11
Identity = 74/262 (28.24%), Postives = 111/262 (42.37%), Query Frame = 0
Query:    5 DSGATDHMTQGPAGLEDHTPAPAGDRVESAG--GTLLPVVGYGHLRLLT--RQLTLNHVAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNIMKFHQVLGHPAEQITRKTARMAGVQLS---------RIWQSCVHCSESRVRRYAVPKPTENRADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL 253
            DSGAT HMT     L D  P+PAG RV   G  G+     G G LR  T  + + L+ V HVP L    +     +   +D  +   P A  +   R  +   F+ L+ +  +LE        A  C P P   +AL        ++  +H  LGH        + R   + L          +  + CV C   +   +       +RA     R+F DL GP  V  L G+R++    D+++R++ +R L  KSDAT A+
Sbjct:  413 DSGATRHMTTRRDLLHDFQPSPAGRRVRVTGAFGSGGFASGTGSLRFSTNGKDMALSDVLHVPGLEAELVSLHCLIEDGYDIRVAPAPEARGLIVSRDNVDARFK-LRNKQFVLE--------ASPCAPSPLRDSALNVALLPSADLPLWHGRLGHGGVNAVLASGRAGSIGLDTAAVTPDSIQTVKDCVPCHLGKDVAHRSHAAATHRATAPFGRVFMDLWGPGPVVSLSGHRYLCGGTDEYSRYRWLRGLTAKSDATRAI 665          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A0V1APS7_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=25 Tax=Trichinella TaxID=6333 RepID=A0A0V1APS7_TRISP)

HSP 1 Score: 70.9 bits (172), Expect = 2.870e-10
Identity = 72/256 (28.12%), Postives = 105/256 (41.02%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLR--LLTRQLTLNH-VAHVPNLGQHNILSTKRL-----TQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTV-TALAATQRGLWNIMKFHQVLGHPAEQITRKTARMAGVQLSRIWQSCVHCSESRVRRYAVPKPTENRADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSD 248
            W  DSGAT H+T     +E++        V  A GT +   G G ++  L T++  + H V H P L   N+LS  R+     T +FD         A+  PR+             NGL  +  RC   A      P      L    RG   +++  Q  G P++ IT+                CV C + +  R   PK    R+      +  D+ GP  V  +GG R+ +  IDDF+R   V FLKHK++
Sbjct:  291 WFLDSGATTHLTHRDDWMEEYN-GHTTHTVAIANGTNITTKGCGVVKIPLATKKTMVAHDVRHAPELAL-NLLSVSRIAAQKKTLIFDENGCRIVDLAIEVPRQ----HILGTATQYNGLYRLN-RCDQWAMTVHDVPDLWHRRLGHLSRGSMKLLQDGQATGIPSDAITKT--------------DCVTCLKGKQCRLPFPKSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNE 525          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A540NPQ2_MALBA (gag_pre-integrs domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NPQ2_MALBA)

HSP 1 Score: 69.3 bits (168), Expect = 3.290e-10
Identity = 66/252 (26.19%), Postives = 107/252 (42.46%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVV--GYGHLRLLTRQLTLNHVAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNIMKFHQVLGHPAEQITRKTARMAGVQLSRIWQS--CVHCSESRVRRYAVPKPTENRADRRTVRLFF-DLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSD 248
            W+ DSGA+ HMT   A L++       ++V    G  LP++  G   L   T    L HV HVP L Q N++S  +        M +YP    ++    G   F  P+Q  +G          ++ +       +TA     + LW     HQ LGHP+ +I  K    + + +        C  C+  +  +  +P  +     R+ + L   D+ GP  +    G R+ ++ IDD+TR+     L+ KSD
Sbjct:   25 WIVDSGASSHMTNSYANLQNPEAYTGPEQVYIGDGKGLPILHSGSSSLHTSTNSFALKHVLHVPALKQ-NLISANQFLLDNSCFMHLYPFHFTVKDLSSGRMLFKGPVQ--HGFYPFH-----SSFSPANSSQALTAYVKAPQHLW-----HQRLGHPSVKIMNKLVSQSCISVLAASNKAFCSDCALGKCSK--LPFSSITCTTRKPLELIHTDVWGPSPILSHHGFRYYVIFIDDYTRYCWFYPLRCKSD 261          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A6A2ZK19_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZK19_HIBSY)

HSP 1 Score: 70.1 bits (170), Expect = 4.860e-10
Identity = 69/253 (27.27%), Postives = 111/253 (43.87%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRLL--TRQLTLNHVAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNIMKFHQVLGHPAEQITRKTARMAGVQLSRI----WQSCVHCSESRVRRYAVPKPTENRADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSD 248
            W  D+GAT HMT   A L++  P     RV    GT +P+   G +  +  +  L L+ V  VPNL + N+LS   LT+  +  +    ++  I           +  + E GL  +  R H +  + L K    T+ A++       + +H  LGHP+ +I     +   + LS       + C  C   ++ R      ++ R      R++ DL GP  +T   G ++  + IDDF+RF     LK KSD
Sbjct:  180 WYTDTGATSHMTNDVAALDNSVPYTGNQRVYIGNGTSMPISRIGSISSIVTSHPLPLSDVLLVPNLTK-NLLSISNLTRENNCLITFSSSSFTIHDLATRTVVGVK--RCEKGLYVLD-RGHASFLSSLSK---CTSRASS-------VTWHPRLGHPSFRIVSSLNKHGAITLSHNNKIDSKPCFGCQLGKIHRLPFSN-SDQRCASLFERIYCDLWGPSPITSPSGYKYYCVLIDDFSRFSWFYPLKLKSD 417          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A0V0T3I0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V0T3I0_9BILA)

HSP 1 Score: 70.1 bits (170), Expect = 5.040e-10
Identity = 72/258 (27.91%), Postives = 106/258 (41.09%), Query Frame = 0
Query:    2 WVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLR--LLTRQLTLNH-VAHVPNLGQHNILSTKRL-----TQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTV--TALAATQRGLWNIMKFHQVLGHPAEQITRKTARMAGVQLSRIWQSCVHCSESRVRRYAVPKPTENRADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSDA 249
            W  DSGAT H+T     +E++        V  A GT +   G G ++  L T +  + H V H P L   N+LS  R+     T +FD         A+  PR+             NGL  +  R H      +   P +    L    RG   +++  Q  G P++ IT+                CV C + +  R   PK    R+      +  D+ GP  V  +GG R+ +  IDDF+R   V FLKHK++A
Sbjct:  291 WFLDSGATTHLTHRDDWMEEYNGCTT-HTVAIANGTNITTKGCGVVKIPLATEKTMVAHDVRHAPELAL-NLLSVSRIAAQKKTLIFDENGCRIVDLAIEVPRQ----HILGTATQYNGLYRLNRRDHWAM--AVQDVPDLWHRRLGHLSRGSMKLLQDGQGTGIPSDAITKT--------------DCVTCLKGKQCRLPFPKSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEA 526          
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Match: A0A177TF14_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TF14_9BASI)

HSP 1 Score: 70.1 bits (170), Expect = 5.340e-10
Identity = 73/270 (27.04%), Postives = 124/270 (45.93%), Query Frame = 0
Query:    1 FWVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRLLTRQ---LTLNHVAHVPN-LGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGMPFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNI----MKFHQVLGHPAEQITRKTARMAGVQ-LSRIWQS---CVHCSESRVRRYAVPK--PTENRADRRTVRLFFDLLGPFHV---TPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNAL 253
            +++ D+ ++ H+      L D+ PAP G  +E A G ++ V GYG L+++T +   +TL  VAH P+ +G  N++  KRLT      +     +A +             +  ++  L MK    V   N + +  T+  +AA   G   I    +  H  L H  +++ +  A    +  L +I      C  C++ ++     P+  P E RA R    +  D+ GP  +     LGG R+ ++ +DDFT+   V+ L  KSDA  AL
Sbjct:  344 YFILDTASSRHIVANGNQLADYRPAPQGTGIECANGGMMAVEGYGTLKVITEEGTTITLLDVAHCPSTIG--NLIGGKRLTNS-GCKITFDDCSATV-------------INTKSDRLIMKA--DVRGGNWVVQLHTIPDIAAVLAGEPKIDSAAVHAHHALAHVNKKVLQAAAASGLIPGLPKILGQLGFCSACAQGKLASTPHPRLCPHE-RASRAMELIHADVFGPERMKEAAALGGYRYGLMLVDDFTKHVWVKLLHLKSDAVKAL 594          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58014.13275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A535S533_9CHLR4.960e-1630.92DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A177VM55_9BASI2.410e-1226.67Integrase catalytic domain-containing protein n=1 ... [more]
UPI001652DC393.250e-1228.14uncharacterized protein LOC100279596 isoform X1 n=... [more]
A0A0V1HEX2_9BILA4.040e-1225.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A238FDN2_9BASI2.670e-1128.24BQ2448_2268 protein n=2 Tax=Microbotryum intermedi... [more]
A0A0V1APS7_TRISP2.870e-1028.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A540NPQ2_MALBA3.290e-1026.19gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6A2ZK19_HIBSY4.860e-1027.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A0V0T3I0_9BILA5.040e-1027.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TF14_9BASI5.340e-1027.04Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 195..253
e-value: 2.6E-5
score: 25.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58014contigH-elongata_contig58014:257..1048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58014.13275.1mRNA_H-elongata_contig58014.13275.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58014 257..1048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58014.13275.1 ID=prot_H-elongata_contig58014.13275.1|Name=mRNA_H-elongata_contig58014.13275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
FWVNDSGATDHMTQGPAGLEDHTPAPAGDRVESAGGTLLPVVGYGHLRLL
TRQLTLNHVAHVPNLGQHNILSTKRLTQMFDTPMRVYPAAALIRPRRGGM
PFFFRPLQPENGLLEMKVRCHVTAKNCLPKPPTVTALAATQRGLWNIMKF
HQVLGHPAEQITRKTARMAGVQLSRIWQSCVHCSESRVRRYAVPKPTENR
ADRRTVRLFFDLLGPFHVTPLGGNRFVMLCIDDFTRFKMVRFLKHKSDAT
NAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf