prot_H-elongata_contig11702.1327.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11702.1327.1
Unique Nameprot_H-elongata_contig11702.1327.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
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BLAST of mRNA_H-elongata_contig11702.1327.1 vs. uniprot
Match: D7FKW9_ECTSI (Similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW9_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.310e-25
Identity = 64/119 (53.78%), Postives = 74/119 (62.18%), Query Frame = 0 
Query:    1 MMDWYGGGPVFCRRVVKVSVPRIVHPERVTPTITIKNGVTNAADGYDGDGHDGDAPHHDNVLVVDLYPLALHVSLCDLTAGRPSGRERLVLSSHHVTVRDMLTEVLQTSRLHGVRRPLS 119
            M+DWYGGGPVF R+VV VS   +  PE+                   G G D +A      L VDLYPLALHVS+CD  AGRP GRERLVL+SHHV VRDML +VL +SRL G+ R LS
Sbjct:  479 MVDWYGGGPVFARQVVNVS-SNLELPEKAR-----------------GGGDDAEAEPSTARLAVDLYPLALHVSMCD-PAGRPGGRERLVLTSHHVHVRDMLADVLDSSRLQGMSRGLS 578
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11702.1327.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKW9_ECTSI1.310e-2553.78Similar to Ubiquitin carboxyl-terminal hydrolase 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11702contigH-elongata_contig11702:3642..5320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11702.1327.1mRNA_H-elongata_contig11702.1327.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11702 2344..5403 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11702.1327.1 ID=prot_H-elongata_contig11702.1327.1|Name=mRNA_H-elongata_contig11702.1327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MMDWYGGGPVFCRRVVKVSVPRIVHPERVTPTITIKNGVTNAADGYDGDG
HDGDAPHHDNVLVVDLYPLALHVSLCDLTAGRPSGRERLVLSSHHVTVRD
MLTEVLQTSRLHGVRRPLSGLPGLSGLSGGQCRW*
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