mRNA_H-elongata_contig58007.13273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58007.13273.1
Unique NamemRNA_H-elongata_contig58007.13273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58007.13273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58007contigH-elongata_contig58007:2855..3679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58007.13273.1prot_H-elongata_contig58007.13273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58007 2855..3636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.7482302-CDS-H-elongata_contig58007:2854..30761622930940.7482302-CDS-H-elongata_contig58007:2854..3076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58007 2855..3076 -
1691679633.4858778-CDS-H-elongata_contig58007:2854..30761691679633.4858778-CDS-H-elongata_contig58007:2854..3076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58007 2855..3076 -
1622930940.7656422-CDS-H-elongata_contig58007:3591..36361622930940.7656422-CDS-H-elongata_contig58007:3591..3636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58007 3592..3636 -
1691679633.4933727-CDS-H-elongata_contig58007:3591..36361691679633.4933727-CDS-H-elongata_contig58007:3591..3636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58007 3592..3636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.7819433-UTR-H-elongata_contig58007:3636..36791622930940.7819433-UTR-H-elongata_contig58007:3636..3679Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58007 3637..3679 -
1691679633.505611-UTR-H-elongata_contig58007:3636..36791691679633.505611-UTR-H-elongata_contig58007:3636..3679Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58007 3637..3679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58007.13273.1

>prot_H-elongata_contig58007.13273.1 ID=prot_H-elongata_contig58007.13273.1|Name=mRNA_H-elongata_contig58007.13273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MSPSRRRGMRDVTGARSKSVPTGREATGSRSPFPLDTEEEAEGLWRDTSS
RRATDGAGDDDGMNDSIGSSCIDILPASRQQTSGVGMEG
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mRNA from alignment at H-elongata_contig58007:2855..3679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58007.13273.1 ID=mRNA_H-elongata_contig58007.13273.1|Name=mRNA_H-elongata_contig58007.13273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=825bp|location=Sequence derived from alignment at H-elongata_contig58007:2855..3679- (Himanthalia elongata Himel1 dioecious)
CGTACCGCGCACGCCACGCAAGACGCCACGGTAGCAATCTACGATGTCGC
CCTCAAGGAGGAGGGGGATGAGAGACGTCACCGGCGCGGTGAGTTTTCCG
AGTAACGAAGTCTGATATCCAAAGCGGAGCCTCCATGATGTGCCATTCAT
TCATCGCGGTACGATTGTGATACTGCACGGTATTTAGCGGCAAGCCGCCA
TATGATGTGACACGACACACGAGACGGCGTGGTACGACATGGTTCTATAC
GGCCCAAGACGCCACGTTTCGGTTCGGCTGTTCGTCAAACGATATGTTCC
TCCTGGGCTAAAGTTAGCACCATCCGCGAACGCCTCAGGGAATATACGGC
CTCCGCTGCTTAACCTCGGGCTCGACAGCGATGTACATGCCTAGAGTGTC
AAGATCCCATTGGGGGCGTGCTTAAACACCACAGGTTGCCATTTAATCAT
TGAGCCCAACCCGCGTCGCAGGCATCAATCCAACCATTTTGATACCATCG
CCTTGCCACGCTAGCTATATATCGCCCTGATCGTCCGGATAATTTTCGTC
TCAAATCATCGACTCTGGTGTTTTTTATACTCACGGCGCGCGTGTTTATT
CAGAGGAGCAAAAGCGTTCCTACGGGCAGGGAGGCGACCGGCTCAAGGAG
CCCCTTTCCGTTGGATACCGAGGAGGAAGCCGAGGGTTTATGGCGAGATA
CGAGCAGCCGGAGGGCGACTGATGGCGCCGGGGACGACGACGGCATGAAT
GACTCGATCGGATCCTCGTGCATCGACATTTTACCGGCATCCCGACAGCA
AACGTCGGGTGTGGGGATGGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig58007:2855..3679-

>mRNA_H-elongata_contig58007.13273.1 ID=mRNA_H-elongata_contig58007.13273.1|Name=mRNA_H-elongata_contig58007.13273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig58007:2855..3679- (Himanthalia elongata Himel1 dioecious)
ATGTCGCCCTCAAGGAGGAGGGGGATGAGAGACGTCACCGGCGCGATGTC
GCCCTCAAGGAGGAGGGGGATGAGAGACGTCACCGGCGCGAGGAGCAAAA
GCGTTCCTACGGGCAGGGAGGCGACCGGCTCAAGGAGCCCCTTTCCGTTG
GATACCGAGGAGGAAGCCGAGGGTTTATGGCGAGATACGAGCAGCCGGAG
GGCGACTGATGGCGCCGGGGACGACGACGGCATGAATGACTCGATCGGAT
CCTCGTGCATCGACATTTTACCGGCATCCCGACAGCAAACGTCGGGTGTG
GGGATGGAGGGGAGGAGCAAAAGCGTTCCTACGGGCAGGGAGGCGACCGG
CTCAAGGAGCCCCTTTCCGTTGGATACCGAGGAGGAAGCCGAGGGTTTAT
GGCGAGATACGAGCAGCCGGAGGGCGACTGATGGCGCCGGGGACGACGAC
GGCATGAATGACTCGATCGGATCCTCGTGCATCGACATTTTACCGGCATC
CCGACAGCAAACGTCGGGTGTGGGGATGGAGGGG
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