prot_H-elongata_contig57976.13269.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57976.13269.1
Unique Nameprot_H-elongata_contig57976.13269.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length273
Homology
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BLAST of mRNA_H-elongata_contig57976.13269.1 vs. uniprot
Match: D7FQU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.130e-16
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0 
Query:    1 GAIYNFLSGRRKRTNDWRPAYPLPSTPEKPPSVSGCISSNSLPKRSLNGMKSDCMMNRWTASFNVDRSRFQSISVMCEQRLRK 83
            G+I +  S RRKR +DWRPA  LP++    PS  G + + S    S   M SDC+MNRWTASF+ DR+RFQSISVMCEQRLRK
Sbjct:   24 GSINSKSSLRRKRKHDWRPANRLPTSHGVSPSFPGRLKAAS--PWSERDMSSDCVMNRWTASFDADRARFQSISVMCEQRLRK 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57976.13269.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQU2_ECTSI5.130e-1657.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57976contigH-elongata_contig57976:22..2437 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57976.13269.1mRNA_H-elongata_contig57976.13269.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57976 22..2437 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57976.13269.1 ID=prot_H-elongata_contig57976.13269.1|Name=mRNA_H-elongata_contig57976.13269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
GAIYNFLSGRRKRTNDWRPAYPLPSTPEKPPSVSGCISSNSLPKRSLNGM
KSDCMMNRWTASFNVDRSRFQSISVMCEQRLRKACVGTEHAPMPDEFRTM
AACEALVIMLPVLHRYRSLLKLIIREILRSVYEDSDLVMDQFEAWLHADS
QEQIFVRAPAEAMLLTSKPYFVRCRELRSEVNGLQMAIIKGKEHEGILLS
SLASARSSIISMIGKDYLAIKRFMFWNWKAAVNNGVVLRRRFQRARLRIW
FWGFRIRLMKIRATETKYQLGLR
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