mRNA_H-elongata_contig57911.13265.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: D7G5W8_ECTSI (Putative homoaconitate hydratase, c-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W8_ECTSI) HSP 1 Score: 155 bits (392), Expect = 3.710e-45 Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLKV 276
AKY+SK+ YD++ LEPVVAKPHSPDN+ALAK+CR KIDRVYIGSCTGGKTEDFAAAARILQN+K VRVPTFLVPATQKVYND+QTLK+
Sbjct: 83 AKYFSKKRYDMSNLEPVVAKPHSPDNKALAKDCRGTKIDRVYIGSCTGGKTEDFAAAARILQNQK----VRVPTFLVPATQKVYNDIQTLKI 170
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: A0A6H5KHV3_9PHAE (3-isopropylmalate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV3_9PHAE) HSP 1 Score: 159 bits (401), Expect = 2.690e-44 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLKV 276
AKY+SK++YD++ LEPVVAKPHSPDN+ALAK+CRD KIDRVYIGSCTGGKTEDFAAAARILQN+K VRVPTFLVPATQKVYND+QTLK+
Sbjct: 340 AKYFSKKTYDMSNLEPVVAKPHSPDNKALAKDCRDTKIDRVYIGSCTGGKTEDFAAAARILQNQK----VRVPTFLVPATQKVYNDIQTLKI 427
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: X2KY86_SCYLO (3-isopropylmalate dehydratase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=X2KY86_SCYLO) HSP 1 Score: 154 bits (390), Expect = 1.370e-42 Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLKV 276
AKY+SKQ YD+ LEPVVAKPHSPDN+ALA++CRD KIDRVYIGSCTGGKTEDFAAAARILQN+K VRVPTFLVPATQKVYND+QT+ +
Sbjct: 359 AKYFSKQRYDVGNLEPVVAKPHSPDNKALARDCRDTKIDRVYIGSCTGGKTEDFAAAARILQNQK----VRVPTFLVPATQKVYNDIQTMTI 446
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: A0A835YVF1_9STRA (3-isopropylmalate dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF1_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.770e-39 Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLKV 276
A Y++ ++YD+++LEPVVA PHSPDN+ALAK+CRD KIDRVYIGSCTGGKTEDFAAAAR+L +K VRVPTFLVPATQKVYND+Q LK+
Sbjct: 288 ATYFADKTYDMSQLEPVVAMPHSPDNKALAKDCRDTKIDRVYIGSCTGGKTEDFAAAARVLDGQK----VRVPTFLVPATQKVYNDIQNLKI 375
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: W7TZ20_9STRA (3-isopropylmalate dehydratase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ20_9STRA) HSP 1 Score: 142 bits (358), Expect = 3.570e-38 Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTL 270
A Y++K +YDL+ LEPVVAKPHSPDNRALA+ECRDIKIDRVYIGSCTGGKTEDF AAARILQ K S VPTFLVPAT++VY+DL +L
Sbjct: 322 ASYFAKYAYDLSSLEPVVAKPHSPDNRALARECRDIKIDRVYIGSCTGGKTEDFVAAARILQQNKVS----VPTFLVPATRRVYDDLYSL 407
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: A0A6P1AAH6_9CYAN (3-isopropylmalate dehydratase large subunit n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P1AAH6_9CYAN) HSP 1 Score: 140 bits (352), Expect = 8.850e-38 Identity = 65/91 (71.43%), Postives = 81/91 (89.01%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLK 273
AK+YS ++YD+++LEPVVAKPHSPDNRALA+ECRD+KIDRVYIGSCTGGKT DF AAR+L+ +K V+VPT++VPATQKVY+DL T+K
Sbjct: 267 AKFYSDRTYDVSQLEPVVAKPHSPDNRALARECRDVKIDRVYIGSCTGGKTSDFLNAARVLKGRK----VKVPTYIVPATQKVYDDLFTVK 353
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: K9TYF3_CHRTP (Homoaconitate hydratase family protein n=26 Tax=Cyanobacteria TaxID=1117 RepID=K9TYF3_CHRTP) HSP 1 Score: 137 bits (346), Expect = 6.650e-37 Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLK 273
AK+YS + YD+++LEPVVA+PHSPDNRALA+EC D+KIDRVYIGSCTGGKTEDF AA IL+ ++ V+VPT+LVPATQKVYNDL TLK
Sbjct: 267 AKFYSDRRYDVSQLEPVVAQPHSPDNRALARECSDVKIDRVYIGSCTGGKTEDFIHAAHILKGQQ----VKVPTYLVPATQKVYNDLFTLK 353
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: A0A2T1E8G0_9CHRO (3-isopropylmalate dehydratase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1E8G0_9CHRO) HSP 1 Score: 136 bits (342), Expect = 2.590e-36 Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLK 273
AK+YS SYD+++LEPVVAKPHSPDNRALA+EC D+KIDRVYIGSCTGGKT DF AA+IL+ +K V+VPT+LVPATQKVY DL T K
Sbjct: 267 AKFYSSHSYDVSQLEPVVAKPHSPDNRALARECSDVKIDRVYIGSCTGGKTTDFINAAQILKGQK----VKVPTYLVPATQKVYEDLFTQK 353
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: A0A1U7IRT4_9CYAN (3-isopropylmalate dehydratase n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A1U7IRT4_9CYAN) HSP 1 Score: 135 bits (341), Expect = 3.620e-36 Identity = 66/91 (72.53%), Postives = 76/91 (83.52%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLK 273
AK+YS+ YD++KLEPVVAKPHSPDNRALAKEC D+KI+RVYIGSCTGGKT DF AARI++ K V+VPT+LVPATQKVY DL T K
Sbjct: 267 AKFYSQHHYDVSKLEPVVAKPHSPDNRALAKECSDVKINRVYIGSCTGGKTSDFLNAARIIKGHK----VKVPTYLVPATQKVYEDLFTQK 353
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Match: A0A446W303_TRITD (Uncharacterized protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A446W303_TRITD) HSP 1 Score: 131 bits (329), Expect = 5.320e-36 Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1
Query: 1 AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKTEDFAAAARILQNKKASSTVRVPTFLVPATQKVYNDLQTLKV 276
A++YS +D++KLEPVVAKPHSPDNRALA+EC+D+KIDRVYIGSCTGGKTEDF AAA++ + V+VPTFLVPATQKV+ D+ +L V
Sbjct: 76 ARFYSDYRFDVSKLEPVVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFIAAAKVFL--ASGQKVKVPTFLVPATQKVWMDVYSLPV 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57911.13265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57911.13265.1 >prot_H-elongata_contig57911.13265.1 ID=prot_H-elongata_contig57911.13265.1|Name=mRNA_H-elongata_contig57911.13265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp AKYYSKQSYDLNKLEPVVAKPHSPDNRALAKECRDIKIDRVYIGSCTGGKback to top mRNA from alignment at H-elongata_contig57911:761..3399+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57911.13265.1 ID=mRNA_H-elongata_contig57911.13265.1|Name=mRNA_H-elongata_contig57911.13265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2639bp|location=Sequence derived from alignment at H-elongata_contig57911:761..3399+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57911:761..3399+ >mRNA_H-elongata_contig57911.13265.1 ID=mRNA_H-elongata_contig57911.13265.1|Name=mRNA_H-elongata_contig57911.13265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig57911:761..3399+ (Himanthalia elongata Himel1 dioecious)back to top |