mRNA_H-elongata_contig117010.1326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117010.1326.1
Unique NamemRNA_H-elongata_contig117010.1326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117010.1326.1 vs. uniprot
Match: D8LTI1_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.960e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:   10 QAAGDIAGARALYHRALLVNHTSPEVLSNLGWLEEESGGGSRESLEKAAELYGRALEVFGMDSPSATRGQVEVNLANVRRRL 255
            Q AGDI GA+AL+HRAL +   SPE+L+NLGWLEE++GGGS+ SLE AA LY RA+ +  +D  S   G+VE NL++V+ RL
Sbjct:  304 QTAGDIPGAKALFHRALSLQPNSPELLNNLGWLEEQTGGGSKLSLETAAGLYERAIRL--LDERSPVLGRVEANLSSVQNRL 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117010.1326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTI1_ECTSI1.960e-1957.32TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117010contigH-elongata_contig117010:326..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D8LTI1
KEGG koko:K16531
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.3746054-CDS-H-elongata_contig117010:325..6191622929680.3746054-CDS-H-elongata_contig117010:325..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117010 326..619 +
1691679117.1041722-CDS-H-elongata_contig117010:325..6191691679117.1041722-CDS-H-elongata_contig117010:325..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117010 326..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117010.1326.1prot_H-elongata_contig117010.1326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117010 326..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117010.1326.1

>prot_H-elongata_contig117010.1326.1 ID=prot_H-elongata_contig117010.1326.1|Name=mRNA_H-elongata_contig117010.1326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
KILQAAGDIAGARALYHRALLVNHTSPEVLSNLGWLEEESGGGSRESLEK
AAELYGRALEVFGMDSPSATRGQVEVNLANVRRRLGEIDEGGAVFYS*
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mRNA from alignment at H-elongata_contig117010:326..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117010.1326.1 ID=mRNA_H-elongata_contig117010.1326.1|Name=mRNA_H-elongata_contig117010.1326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig117010:326..619+ (Himanthalia elongata Himel1 dioecious)
AAAATTCTCCAGGCAGCGGGCGATATCGCCGGTGCGCGAGCTCTATATCA
CCGAGCGCTTCTGGTGAACCACACGTCACCCGAGGTATTAAGCAATCTTG
GCTGGCTAGAGGAGGAATCTGGTGGAGGCTCTAGGGAATCCCTCGAGAAA
GCCGCGGAGCTGTACGGTAGAGCGCTGGAGGTATTTGGCATGGACTCACC
TTCAGCCACTCGTGGGCAGGTGGAGGTAAACCTTGCCAACGTCAGGAGGC
GACTTGGCGAGATTGACGAGGGAGGCGCCGTATTTTACTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig117010:326..619+

>mRNA_H-elongata_contig117010.1326.1 ID=mRNA_H-elongata_contig117010.1326.1|Name=mRNA_H-elongata_contig117010.1326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig117010:326..619+ (Himanthalia elongata Himel1 dioecious)
AAAATTCTCCAGGCAGCGGGCGATATCGCCGGTGCGCGAGCTCTATATCA
CCGAGCGCTTCTGGTGAACCACACGTCACCCGAGGTATTAAGCAATCTTG
GCTGGCTAGAGGAGGAATCTGGTGGAGGCTCTAGGGAATCCCTCGAGAAA
GCCGCGGAGCTGTACGGTAGAGCGCTGGAGGTATTTGGCATGGACTCACC
TTCAGCCACTCGTGGGCAGGTGGAGGTAAACCTTGCCAACGTCAGGAGGC
GACTTGGCGAGATTGACGAGGGAGGCGCCGTATTTTACTCGTAGAAAATT
CTCCAGGCAGCGGGCGATATCGCCGGTGCGCGAGCTCTATATCACCGAGC
GCTTCTGGTGAACCACACGTCACCCGAGGTATTAAGCAATCTTGGCTGGC
TAGAGGAGGAATCTGGTGGAGGCTCTAGGGAATCCCTCGAGAAAGCCGCG
GAGCTGTACGGTAGAGCGCTGGAGGTATTTGGCATGGACTCACCTTCAGC
CACTCGTGGGCAGGTGGAGGTAAACCTTGCCAACGTCAGGAGGCGACTTG
GCGAGATTGACGAGGGAGGCGCCGTATTTTACTCGTAG
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