mRNA_H-elongata_contig5785.13258.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5785.13258.1
Unique NamemRNA_H-elongata_contig5785.13258.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5785.13258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5785contigH-elongata_contig5785:7395..9057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size275
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5785.13258.1prot_H-elongata_contig5785.13258.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5785 7396..9057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.378651-CDS-H-elongata_contig5785:7395..74691622930939.378651-CDS-H-elongata_contig5785:7395..7469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5785 7396..7469 -
1691679632.9630089-CDS-H-elongata_contig5785:7395..74691691679632.9630089-CDS-H-elongata_contig5785:7395..7469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5785 7396..7469 -
1622930939.3972342-CDS-H-elongata_contig5785:8165..82281622930939.3972342-CDS-H-elongata_contig5785:8165..8228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5785 8166..8228 -
1691679632.9709156-CDS-H-elongata_contig5785:8165..82281691679632.9709156-CDS-H-elongata_contig5785:8165..8228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5785 8166..8228 -
1622930939.4116395-CDS-H-elongata_contig5785:8921..90571622930939.4116395-CDS-H-elongata_contig5785:8921..9057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5785 8922..9057 -
1691679632.9791698-CDS-H-elongata_contig5785:8921..90571691679632.9791698-CDS-H-elongata_contig5785:8921..9057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5785 8922..9057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5785.13258.1

>prot_H-elongata_contig5785.13258.1 ID=prot_H-elongata_contig5785.13258.1|Name=mRNA_H-elongata_contig5785.13258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
ATITPASPTLVPTLAPAAGGVAVLAEWEIGAISAGISLLLILVALCMYCF
RLGRTQDKTGSAATTRDSSMSTIFPTLDNGPPPQQNTLPSR
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mRNA from alignment at H-elongata_contig5785:7395..9057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5785.13258.1 ID=mRNA_H-elongata_contig5785.13258.1|Name=mRNA_H-elongata_contig5785.13258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1663bp|location=Sequence derived from alignment at H-elongata_contig5785:7395..9057- (Himanthalia elongata Himel1 dioecious)
GCAACGATCACCCCCGCATCTCCAACGCTCGTTCCCACATTAGCTCCGGC
AGCAGGCGGAGTGGCAGTTCTTGCTGAGTGGGAGATCGGCGCCATCTCGG
CGGGTATAAGTCTGCTCCTAATCCTCGTCGCCTTATGTGAGATGCCTGAG
TGTGACCGGCTGGACATTTGGATGACCCCAAGCCTCTGTTCGGAAGTGAA
AGTGTGCGCTTACTTGGAATTGTTTAATTTTTGTGCAGCCAATATGTAGC
AGCCCTTGAGGCGTGAGGAGGGGGCGATAGCCTTACGTGCGCTAGATTTT
TTAACACCTGAGAGCGGTGTAGAAAAGTAGGTAATTGATTACACTTATGA
CGTGTGGTACCTTTATAGGCTTTATCCTCGCATCATGGGGATACGTTTGC
ACGCAGAAATGCCTTTGCTAAAAGTTTCCCATGCAGACAAGATAGATGAC
TGGGTGTATTCGTTCATTTTCATGTATCAAGGAGGGTAGATTTGTTTCAC
TTTCTGCCGATGTGGTAATTCAGCGTACTCCGTTACCAATCCCGTCTGTG
GTCAGGGATCAACCAGTATCTCCCCTGTTAACACCTTCGAATTTTATCGA
TATACAAGTTCAGCACTCCTACACCCTATCGACCAATGTCTGACATTTGC
TTAACTACATGAGTAAATGAAACAATCATGAAGAGATTCGAACCCAAACT
TCCGAAGTTAGGATTATCTGATTACCACTAGAAAACTTCTCAGGCGCCAA
CCAAAATGTTCCACACAAACCGTCGAGGAACAAGAGCTTATCCAGGAACG
ATATGTTTTCGCTACGCGCTCGTTTTTAGGTATGTATTGCTTCCGACTCG
GGCGTACTCAAGACAAGACAGGCTCCGCAGCCACGACGCGAGGTGATGCA
CAACGATACGCTAGGGGCTTAAAAATAACCTATATTTCGGCTTCCCAGTG
AAATTCTGTCTTGTAGATGAATTGGGTGTTTCCATTATCGGCGCGGGTTA
TGTTCTGCGATTGTCTGGTTGTCCAGTTGAAAGAATGAGTTATTTTATGC
CATCGCACAGGAGCGAAAAATGTGTATCGTCTTTATTCGCACGGGAGGCG
CGATTATTTTTCATTCATGCTTAAAGTACTCGGTCTGTTATTTTCAATAA
TAATACAGTCTGCCTTTTTACGTTTCTTGGTTACACGAAGTAATATTCAT
TTTTTATCTTGTCTTTTTCAGGATACATCGAAGCAGAAAATACCAAATCT
TGTAAGTATCCTTTAGAAATATTTTGTTGTTGATGGTCAAGAATTACGCT
TCAACTGCTAGCCCTTGTCGTCGCGATTTCTGAGCATTCCATTGCACTGG
CATATTATACTATCCCGCCGGTGTTATCGACGGCTACGTGGACCAAAGTA
TTATCTTTCTTCTCGATATATTTTGTGGCATTATATCGCTCGTACGGGTA
CTATAAAGGGTTTCAAATTTCGATCTGCGCTTAATGCGTTGGTGTGAGTG
TATGGGAATTTATTCTTCGCATCGATGATATGGTGGTCACATAAAAGACT
TCGTGGTGGCGACGCCGACGCCCCGTGGTATCCGCCAGATTCATCCATGA
GTACGATATTTCCGACCCTGGACAATGGACCACCCCCGCAACAGAACACT
TTACCCAGCCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig5785:7395..9057-

>mRNA_H-elongata_contig5785.13258.1 ID=mRNA_H-elongata_contig5785.13258.1|Name=mRNA_H-elongata_contig5785.13258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig5785:7395..9057- (Himanthalia elongata Himel1 dioecious)
GCAACGATCACCCCCGCATCTCCAACGCTCGTTCCCACATTAGCTCCGGC
AGCAGGCGGAGTGGCAGTTCTTGCTGAGTGGGAGATCGGCGCCATCTCGG
CGGGTATAAGTCTGCTCCTAATCCTCGTCGCCTTATGCAACGATCACCCC
CGCATCTCCAACGCTCGTTCCCACATTAGCTCCGGCAGCAGGCGGAGTGG
CAGTTCTTGCTGAGTGGGAGATCGGCGCCATCTCGGCGGGTATAAGTCTG
CTCCTAATCCTCGTCGCCTTATGTATGTATTGCTTCCGACTCGGGCGTAC
TCAAGACAAGACAGGCTCCGCAGCCACGACGCGAGGTATGTATTGCTTCC
GACTCGGGCGTACTCAAGACAAGACAGGCTCCGCAGCCACGACGCGAGAT
TCATCCATGAGTACGATATTTCCGACCCTGGACAATGGACCACCCCCGCA
ACAGAACACTTTACCCAGCCGCATTCATCCATGAGTACGATATTTCCGAC
CCTGGACAATGGACCACCCCCGCAACAGAACACTTTACCCAGCCGC
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