mRNA_H-elongata_contig57841.13256.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57841.13256.1 vs. uniprot
Match: D7FLH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH9_ECTSI) HSP 1 Score: 313 bits (803), Expect = 9.850e-98 Identity = 210/456 (46.05%), Postives = 260/456 (57.02%), Query Frame = 1
Query: 1 MNGKDAVDCSSRTVVATLTRALLGSWKGSVDTGRKLFDQSVLRNPNRSIPVGLGLEMLVQSLVQDDIDSYKLAKARRMVCEDSPSPFKN---------------------------EGEGSYEASSRSSTCPSRRRPDCCHIDEAAACVTIIGNYVRADADTAGSFFQDIIPTLLVLGVGGRDRGGRGXXXXXXGRLGNSERLPPRLVAVLRSLVDSTRRGMSRNSFNVERMIVHTVRGVKDWADPVEILPSPCLFSV------------HTSSTPEHRLLDGEGAGKFDVESPISTMVGKKAAASNKGISANEKHRRRGLILACLDILGPTQSCMALIRRVREMVEGEGKANLRSAVVEALLEYRRTCAASDVEAAQALMIGVLSDLTEDIFIGVRLSALAAVGEAF-------------SSDFVPAASFLLRRCLDTSPKVNR-HFQVSVDYFR 1209
MNG+D VDC RTVVATLTRALL SW+GS GR+LFDQSVL+ P+RS PVGLGLE+L+Q LVQDD D +L A + +PS + S+ A S P+ DE ACVTIIGNYVRAD DT+G+FF+D+IP +L++G+GG RG + G S R+P RL A+LRSLV +TR RNSFN+ERMIVHTV+ VK W DP +L S SS + ++ G A + K SN G N+K RRRGL+LAC+DILG T SC++LIR+ EMVEGE KA+LRSAV + LLEYRRTC++SD Q +++GVLS L D + VRLSALAA+GEA SSD VPA S LL RCLD +PKV ++ VD FR
Sbjct: 1 MNGRDTVDCGRRTVVATLTRALLRSWEGSTTVGRELFDQSVLKTPDRSGPVGLGLEVLLQCLVQDDGDFGQLEMAVEAEEDTAPSQASXXXXXXXXXXXXXXXXXXXXXXXXXXXADATASFAALS----------PE----DETRACVTIIGNYVRADPDTSGAFFRDVIPKVLLMGMGGGRRG----------QSGGSRRVPRRLAALLRSLVRTTR---CRNSFNMERMIVHTVKEVKAWGDPSVVLLSXXXXXXXXXXXXXXXXXXEVSSLGDDVVMGGT-ATVDRARARXXXXXKKDGRGSNAG---NDKLRRRGLVLACIDILGHTSSCLSLIRQ--EMVEGEAKASLRSAVADGLLEYRRTCSSSDTHGVQTVLLGVLSALALDGVVAVRLSALAAIGEALGPIKRFASVFQGCSSDCVPAVSLLLERCLDAAPKVRALALRLLVDEFR 423
BLAST of mRNA_H-elongata_contig57841.13256.1 vs. uniprot
Match: A0A6H5KPL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL7_9PHAE) HSP 1 Score: 312 bits (800), Expect = 1.140e-96 Identity = 209/477 (43.82%), Postives = 258/477 (54.09%), Query Frame = 1
Query: 1 MNGKDAVDCSSRTVVATLTRALLGSWKGSVDT----------------------------------------------GRKLFDQSVLRNPNRSIPVGLGLEMLVQSLVQDDIDSYKLAKARRMVCEDSPSPFKNEGEGS----------------------YEASSRSSTCPSRRRPDCCHIDEAAACVTIIGNYVRADADTAGSFFQDIIPTLLVLGVGGRDRGGRGXXXXXXGRLGNSERLPPRLVAVLRSLVDSTRRGMSRNSFNVERMIVHTVRGVKDWADPVEILPSPCLFSVHTSSTPEHRLLDGEG-----AGKFDVESPISTMVGKKAAASNKGISANEKHRRRGLILACLDILGPTQSCMALIRRVREMVEGEGKANLRSAVVEALLEYRRTCAASDVEAAQALMIGVLSDLTEDIFIGVRLSALAAVGEAFSSDFVPAASFLLRRCLDTSPKVNR-HFQVSVDYFR 1209
MNG+D VDC RTVVATLTRALLGSW+GS GR+LFDQSVL+NP+RS PVGLGLE+L+Q LVQDD + A + +PS + EGS +S ++ P DE ACVTIIGNYVRAD DT+G+FF+D+IP +L++G+GG GR G+ G S R+PPRL A+LRSLV STR SRNSFN+ERM+VHTV+ VK W DP +L + G G V+ + GK + N+K RRRGL+LAC DILG T SCM+LIR+ EMVEGE KA+LRSAV + LLEYRRTC++SD Q +++GVLS L D + VRLSALAA+GE SSD VP S LL RCLD +PKV ++ VD FR
Sbjct: 29 MNGRDTVDCGRRTVVATLTRALLGSWEGSATMQQNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSLPRTRVSRFQGRELFDQSVLKNPDRSGPVGLGLEVLLQCLVQDDGAFGQQDMAVEAGEDIAPSQASSSSEGSRXXXXXXXXXXXXXXXXXXXXXVATASFAALSPE---------DETRACVTIIGNYVRADPDTSGAFFRDVIPKVLLMGMGG----GR------QGQSGGSRRIPPRLAALLRSLVRSTR---SRNSFNMERMVVHTVKEVKAWGDPSVVLXXXXXXXXXXXXXXXXXDVSSLGDDVVMGGSATVDRARARNKGKGKKGGRASSAGNDKLRRRGLVLACTDILGHTSSCMSLIRQ--EMVEGEAKASLRSAVADGLLEYRRTCSSSDTHDVQTVLLGVLSSLALDGVVSVRLSALAAIGEGCSSDCVPGVSLLLERCLDAAPKVRALALRLLVDEFR 481 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57841.13256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57841.13256.1 >prot_H-elongata_contig57841.13256.1 ID=prot_H-elongata_contig57841.13256.1|Name=mRNA_H-elongata_contig57841.13256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=403bp MNGKDAVDCSSRTVVATLTRALLGSWKGSVDTGRKLFDQSVLRNPNRSIPback to top mRNA from alignment at H-elongata_contig57841:141..3217+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57841.13256.1 ID=mRNA_H-elongata_contig57841.13256.1|Name=mRNA_H-elongata_contig57841.13256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3077bp|location=Sequence derived from alignment at H-elongata_contig57841:141..3217+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57841:141..3217+ >mRNA_H-elongata_contig57841.13256.1 ID=mRNA_H-elongata_contig57841.13256.1|Name=mRNA_H-elongata_contig57841.13256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2418bp|location=Sequence derived from alignment at H-elongata_contig57841:141..3217+ (Himanthalia elongata Himel1 dioecious)back to top |