mRNA_H-elongata_contig5783.13252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5783.13252.1
Unique NamemRNA_H-elongata_contig5783.13252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5783.13252.1 vs. uniprot
Match: A0A6H5L3B9_9PHAE (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3B9_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 1.480e-123
Identity = 249/440 (56.59%), Postives = 317/440 (72.05%), Query Frame = 1 
Query:    1 ASQRELSQANSTLSALQGALRDSQYEVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVGFKQSHEAHQRTAQRSHAFEREFENTRRTIDALRTEKTALKEQVDVGLEDRKALEAQLCQLQAGLTEGQEAARMEARKETERMETRLKEVMKERDRKNAELELQNARRKETREMARDLESQLAAVDRISQEREAELIKLREEIAGLRKDSGEATEKKNTWATKYDALERNFKQVRAQGKKAEAELEQMRHTIGRIEAEKTMLAERVEEEASERVTVVASIAHERDFLLRQASARMRRRSRVDLLEQEMTDLRRVEEAHATVAAARAQKTGVLEEYRSRAQQALKRANEVASQTTAENKQLEINMAKLSAEVARQRPLWEEAKQQEKLHLAELAELKSQLSIAVSNRENTGTQVASLEECLAREEEERSATLASVVRLEAQ 1320
            A ++ELS   +  S L+GALR+S+ EV                               R+GF++S+ AHQRTA++SHA E E  N R  +++LR E  ALK +VD G+EDR ALE +L  LQAG+TEGQEAAR E R+E ER+E R+++++K+RDRK AEL+LQNARRKETREMARDLESQLAAV+RI+QERE EL K R+++  L+K++GEAT++K TWATKY+ALERNFKQVRAQ  + E+ELE+ R    RIEAEK +L ERVE E +ERVTVVAS++ ERDFLLRQA A       VD LEQE+ +LRR +EA AT AAARAQ TGVLEEYR+RAQQALKRANE+ SQT +ENK+L+  M KLS EVA+QRPLWE++KQ E++H AE+AELK +++   +   N     A+LE  +  +EEER     SV+RLEAQ
Sbjct:  326 AMRQELSLVKNAASGLEGALRESRSEVQ-------LLRELLATEQDTTRKLSDEVNATRMGFQESNAAHQRTAEQSHALEEELYNARTLVESLRAESAALKAKVDEGVEDRHALEGKLRHLQAGVTEGQEAARQEGRQEVERLEARIRDLLKDRDRKQAELDLQNARRKETREMARDLESQLAAVERIAQEREVELSKQRDDMVALKKNTGEATDQKKTWATKYEALERNFKQVRAQSIRIESELEEAREHATRIEAEKAVLEERVEVEGAERVTVVASVSQERDFLLRQAIA-------VDRLEQEVVELRRSQEAQATAAAARAQTTGVLEEYRTRAQQALKRANEITSQTASENKRLKAEMRKLSDEVAQQRPLWEQSKQLEEVHRAEVAELKEKIANQATELGNMAAAAAALEAQVLEKEEERRDAHTSVMRLEAQ 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5783.13252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3B9_9PHAE1.480e-12356.59GRIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5783contigH-elongata_contig5783:137..3180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionGRIP
Ec32 orthologEc-01_003650.1
Hectar predicted targeting categoryother localisation
Exons9
Model size1320
Cds size1320
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.504172-CDS-H-elongata_contig5783:136..2741622930938.504172-CDS-H-elongata_contig5783:136..274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 137..274 -
1691679632.6038394-CDS-H-elongata_contig5783:136..2741691679632.6038394-CDS-H-elongata_contig5783:136..274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 137..274 -
1622930938.5256467-CDS-H-elongata_contig5783:510..6091622930938.5256467-CDS-H-elongata_contig5783:510..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 511..609 -
1691679632.622736-CDS-H-elongata_contig5783:510..6091691679632.622736-CDS-H-elongata_contig5783:510..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 511..609 -
1622930938.5422485-CDS-H-elongata_contig5783:814..9971622930938.5422485-CDS-H-elongata_contig5783:814..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 815..997 -
1691679632.635712-CDS-H-elongata_contig5783:814..9971691679632.635712-CDS-H-elongata_contig5783:814..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 815..997 -
1622930938.5593414-CDS-H-elongata_contig5783:1105..13061622930938.5593414-CDS-H-elongata_contig5783:1105..1306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 1106..1306 -
1691679632.6450977-CDS-H-elongata_contig5783:1105..13061691679632.6450977-CDS-H-elongata_contig5783:1105..1306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 1106..1306 -
1622930938.577804-CDS-H-elongata_contig5783:1536..16651622930938.577804-CDS-H-elongata_contig5783:1536..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 1537..1665 -
1691679632.6541677-CDS-H-elongata_contig5783:1536..16651691679632.6541677-CDS-H-elongata_contig5783:1536..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 1537..1665 -
1622930938.7499628-CDS-H-elongata_contig5783:1956..20651622930938.7499628-CDS-H-elongata_contig5783:1956..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 1957..2065 -
1691679632.6634638-CDS-H-elongata_contig5783:1956..20651691679632.6634638-CDS-H-elongata_contig5783:1956..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 1957..2065 -
1622930938.7715762-CDS-H-elongata_contig5783:2294..24461622930938.7715762-CDS-H-elongata_contig5783:2294..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 2295..2446 -
1691679632.672442-CDS-H-elongata_contig5783:2294..24461691679632.672442-CDS-H-elongata_contig5783:2294..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 2295..2446 -
1622930938.7864301-CDS-H-elongata_contig5783:2682..28361622930938.7864301-CDS-H-elongata_contig5783:2682..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 2683..2836 -
1691679632.6828065-CDS-H-elongata_contig5783:2682..28361691679632.6828065-CDS-H-elongata_contig5783:2682..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 2683..2836 -
1622930938.8050594-CDS-H-elongata_contig5783:3025..31801622930938.8050594-CDS-H-elongata_contig5783:3025..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 3026..3180 -
1691679632.692073-CDS-H-elongata_contig5783:3025..31801691679632.692073-CDS-H-elongata_contig5783:3025..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5783 3026..3180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5783.13252.1prot_H-elongata_contig5783.13252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5783 137..3180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5783.13252.1

>prot_H-elongata_contig5783.13252.1 ID=prot_H-elongata_contig5783.13252.1|Name=mRNA_H-elongata_contig5783.13252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=440bp
ASQRELSQANSTLSALQGALRDSQYEVARLRDIVSTQENKMRRQEENIAH
LSDEISTARVGFKQSHEAHQRTAQRSHAFEREFENTRRTIDALRTEKTAL
KEQVDVGLEDRKALEAQLCQLQAGLTEGQEAARMEARKETERMETRLKEV
MKERDRKNAELELQNARRKETREMARDLESQLAAVDRISQEREAELIKLR
EEIAGLRKDSGEATEKKNTWATKYDALERNFKQVRAQGKKAEAELEQMRH
TIGRIEAEKTMLAERVEEEASERVTVVASIAHERDFLLRQASARMRRRSR
VDLLEQEMTDLRRVEEAHATVAAARAQKTGVLEEYRSRAQQALKRANEVA
SQTTAENKQLEINMAKLSAEVARQRPLWEEAKQQEKLHLAELAELKSQLS
IAVSNRENTGTQVASLEECLAREEEERSATLASVVRLEAQ
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mRNA from alignment at H-elongata_contig5783:137..3180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5783.13252.1 ID=mRNA_H-elongata_contig5783.13252.1|Name=mRNA_H-elongata_contig5783.13252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3044bp|location=Sequence derived from alignment at H-elongata_contig5783:137..3180- (Himanthalia elongata Himel1 dioecious)
GCTTCACAACGAGAGCTTTCTCAAGCCAACAGTACCTTATCGGCGCTCCA
AGGGGCCCTGCGGGACAGCCAGTACGAGGTTGCACGGCTGCGAGACATAG
TATCAACACAAGAGAATAAGATGCGACGGCAGGAGGAGAATATCGCGCAT
CTAAGGTGACTTGCGCAGCGTATATGGCGGCGTTTGGTGTGCTGGTCATA
GTAATAAGTTATTCAAGTCGTTTGGTTTTGGTAGCCAGCTCCTAGAATGT
GTGCTGATCTTGATCTTTCCATATGAAACCCATCTTGGTCGGTCCAGCAA
GCGGTCGCGTGTCACACTCCTGTCACACTCCTCAACTCCCGCAGCGATGA
AATCAGCACAGCCCGGGTGGGTTTTAAGCAGTCCCACGAAGCGCATCAGC
GGACCGCTCAGCGCAGTCATGCGTTTGAACGAGAATTTGAAAATACCCGG
CGGACAATCGACGCTTTGAGGACGGAAAAGACCGCCCTAAAGGAACAGGT
ACTAATATTAATACTAATAATGTACCCGGTAAACCACTACCTGGTATAAT
AGTAAATTATTTGTGCATCGTCGGAGGAGGATATAGGAGTAAAGCGGGCA
GTATCGTTCTAGTATTATGATGGCTCTACTGCTCGCCACTTCGCTGGCAC
CCCCTAGCTGTGTGTCGGCGTGGGTGGGAGCTTTGATTTGTGGCGTTCTG
TAACGCATCTGAAGTTATTTTTAATATTTTGAAGGTGGACGTGGGTTTGG
AGGATCGGAAAGCTTTGGAGGCTCAACTGTGTCAGCTACAGGCAGGCTTG
ACCGAAGGACAAGAGGCAGCGAGGATGGAGGCGAGGAAGGAGACGGAGAG
GATGGAGACCAGATTGAAAGAGGTCATGAAAGAGAGGTCAGACGCTCGTT
GGTTCATGAGTCGTTTTTTGTTGAGAGTGATTTGAGAGGGAACGGCGTGA
TCCTCTCACAAACACACGGCAACTAGTTAGTCCGAGTTGGATGCCCTCTC
TAGCGCCTCTCTATTGTAACGAACATGTTTTGTGGGTTTGTTCGGTTCGG
GCCGGGTCGGGTGGGATGCTTGATACTTGATGCTCTTTCGTGTGTTTGGG
ATATATGCTAAAAAGAGACCGGAAAAACGCGGAGCTGGAACTGCAAAACG
CCCGGCGTAAGGAAACGAGGGAGATGGCCCGTGATCTAGAAAGTCAGCTG
GCGGCCGTCGATCGCATCTCTCAGGTGAGTCGTAAAGTATCCTGAAGTGT
CGTGGTGTCCCAATCCACAGCGTAGCCACCAACTTGGCGATTTGTTTTAG
TGTGTGGATAAGAGGGTGCTATAGATGCACATGCATTCCCATTGCAAGGG
CGGCACCATAAAAGAATGATGGTCTTAGCTACGGATCGTTGTTAGCGTGT
CCATGCTCGCTGACTCACGTGCGCTGGCATTATACATGCGTCCCGACCTG
ACTTGAAGACGCGTGCAGGAAAATAATGTGCATGTTCTTCATCAATCCCC
TTATCACAATGAAAGGAACGCGAGGCGGAGCTGATTAAGCTTAGGGAAGA
GATTGCTGGTCTGAGAAAGGATAGCGGCGAGGCGACAGAGAAGAAAAACA
CATGGGCAACCAAGTACGATGCTCTCGAGCGTAACTTTAAGCAGGTGTGT
ATCTCGCTGTTAACCTTTCCTTCTCTTTGCATAGCACTGTACAGTCCGAT
TCGACCACGGCGTCGTTGTTTTCTTCCGCCTTGACATGCCTTCACATCGA
CTTGGGAACGTGAGACTCTTGTCTTCTAGTCAACGTTGTGATGCTCCCTT
CCCAGTTGAAGCCGTATATATAGCCATGGTGTGCGATTGATATATGTTCC
TGTTCGAATGTGGGCTTGAGGTAGGTTCGCGCACAAGGCAAGAAGGCAGA
GGCTGAACTGGAGCAAATGCGGCACACCATCGGCCGTATCGAGGCCGAGA
AGACGATGTTGGCCGAGCGTGTGGAAGAGGAAGCATCGGAGCGTGTGACC
GTCGTTGCGTCGATCGCACACGAGCGCGACTTTCTCCTAAGGCAGGCAAG
CGCCCGTATGCGGAGACGCTCGCGTGTTTGACTTGCACCTCGTGTGTCAA
GCTGCAATTTTTCTTGTTATGACTGTGAGATACAACATACTTCCACATTA
AACCGAATGTGCCGTGCTAATTTCCTTGTACAGGTGGACCTCTTGGAGCA
GGAAATGACAGATTTGAGGCGGGTGGAGGAAGCGCACGCTACAGTAGCGG
CTGCTCGTGCCCAAAAAACTGGCGTGCTGGAGGAGTACCGGTCGAGGGCG
CAGCAGGCGCTCAAACGCGCGAACGAGGTCGCGAGCCAGACTACTGCCGA
GAACAAGCAACTTGAAGTAAGTGGGATAAGTGACTCTTGGGTTCTGATGT
AAACTGCTCGCAGGCCAGGAGATAGACACTAAGAAATAATAACTTCGAAT
GTTGCCTCAGCTTGGGGCTACTATCGGGGACATGTTGCTCATCTAGAGCG
TGGTATCCACGGGATGCTAATTTTTCACGTGCATTAGGTGGTCATCACCC
CGGCCTTCGTCTCCTTGACAGATAAATATGGCGAAACTATCCGCTGAAGT
GGCAAGGCAGCGACCATTATGGGAAGAAGCGAAGCAGCAGGAGAAGCTTC
ACCTCGCGGAGTTGGCGGAAGTAAGCCATATATCTTCCGTGTTGTGTTTG
ATCGGCTCTCTGGCTTACCACCTGTCATCCACCCTAGTTACAAGACACGA
TGCTGGTGTTTAGACGAACCGTTCGTTCTTTCGCTGCTTATGTTGATGTT
GATTGTTGATTCTAAGCCATACCCACGGGTAAACATAGGTTCCTCTCAAG
TTCTGTGGAAATACTCAAACAAAATGCTTCGCGCGCTTTTCTCGCCGGCG
CCCCAGCTCAAGAGCCAATTGAGTATTGCGGTATCAAACCGGGAAAACAC
AGGGACTCAGGTGGCTTCGTTAGAAGAGTGCCTAGCGAGGGAAGAAGAAG
AAAGGAGCGCGACACTCGCCTCGGTGGTGCGACTTGAAGCCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig5783:137..3180-

>mRNA_H-elongata_contig5783.13252.1 ID=mRNA_H-elongata_contig5783.13252.1|Name=mRNA_H-elongata_contig5783.13252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2640bp|location=Sequence derived from alignment at H-elongata_contig5783:137..3180- (Himanthalia elongata Himel1 dioecious)
GCTTCACAACGAGAGCTTTCTCAAGCCAACAGTACCTTATCGGCGCTCCA
AGGGGCCCTGCGGGACAGCCAGTACGAGGTTGCACGGCTGCGAGACATAG
TATCAACACAAGAGAATAAGATGCGACGGCAGGAGGAGAATATCGCGCAT
CTAAGGCTTCACAACGAGAGCTTTCTCAAGCCAACAGTACCTTATCGGCG
CTCCAAGGGGCCCTGCGGGACAGCCAGTACGAGGTTGCACGGCTGCGAGA
CATAGTATCAACACAAGAGAATAAGATGCGACGGCAGGAGGAGAATATCG
CGCATCTAAGCGATGAAATCAGCACAGCCCGGGTGGGTTTTAAGCAGTCC
CACGAAGCGCATCAGCGGACCGCTCAGCGCAGTCATGCGTTTGAACGAGA
ATTTGAAAATACCCGGCGGACAATCGACGCTTTGAGGACGGAAAAGACCG
CCCTAAAGGAACAGCGATGAAATCAGCACAGCCCGGGTGGGTTTTAAGCA
GTCCCACGAAGCGCATCAGCGGACCGCTCAGCGCAGTCATGCGTTTGAAC
GAGAATTTGAAAATACCCGGCGGACAATCGACGCTTTGAGGACGGAAAAG
ACCGCCCTAAAGGAACAGGTGGACGTGGGTTTGGAGGATCGGAAAGCTTT
GGAGGCTCAACTGTGTCAGCTACAGGCAGGCTTGACCGAAGGACAAGAGG
CAGCGAGGATGGAGGCGAGGAAGGAGACGGAGAGGATGGAGACCAGATTG
AAAGAGGTCATGAAAGAGAGGTGGACGTGGGTTTGGAGGATCGGAAAGCT
TTGGAGGCTCAACTGTGTCAGCTACAGGCAGGCTTGACCGAAGGACAAGA
GGCAGCGAGGATGGAGGCGAGGAAGGAGACGGAGAGGATGGAGACCAGAT
TGAAAGAGGTCATGAAAGAGAGAGACCGGAAAAACGCGGAGCTGGAACTG
CAAAACGCCCGGCGTAAGGAAACGAGGGAGATGGCCCGTGATCTAGAAAG
TCAGCTGGCGGCCGTCGATCGCATCTCTCAGAGACCGGAAAAACGCGGAG
CTGGAACTGCAAAACGCCCGGCGTAAGGAAACGAGGGAGATGGCCCGTGA
TCTAGAAAGTCAGCTGGCGGCCGTCGATCGCATCTCTCAGGAACGCGAGG
CGGAGCTGATTAAGCTTAGGGAAGAGATTGCTGGTCTGAGAAAGGATAGC
GGCGAGGCGACAGAGAAGAAAAACACATGGGCAACCAAGTACGATGCTCT
CGAGCGTAACTTTAAGCAGGAACGCGAGGCGGAGCTGATTAAGCTTAGGG
AAGAGATTGCTGGTCTGAGAAAGGATAGCGGCGAGGCGACAGAGAAGAAA
AACACATGGGCAACCAAGTACGATGCTCTCGAGCGTAACTTTAAGCAGGT
TCGCGCACAAGGCAAGAAGGCAGAGGCTGAACTGGAGCAAATGCGGCACA
CCATCGGCCGTATCGAGGCCGAGAAGACGATGTTGGCCGAGCGTGTGGAA
GAGGAAGCATCGGAGCGTGTGACCGTCGTTGCGTCGATCGCACACGAGCG
CGACTTTCTCCTAAGGCAGGCAAGCGCCCGTATGCGGAGACGCTCGCGTG
TTCGCGCACAAGGCAAGAAGGCAGAGGCTGAACTGGAGCAAATGCGGCAC
ACCATCGGCCGTATCGAGGCCGAGAAGACGATGTTGGCCGAGCGTGTGGA
AGAGGAAGCATCGGAGCGTGTGACCGTCGTTGCGTCGATCGCACACGAGC
GCGACTTTCTCCTAAGGCAGGCAAGCGCCCGTATGCGGAGACGCTCGCGT
GTGGACCTCTTGGAGCAGGAAATGACAGATTTGAGGCGGGTGGAGGAAGC
GCACGCTACAGTAGCGGCTGCTCGTGCCCAAAAAACTGGCGTGCTGGAGG
AGTACCGGTCGAGGGCGCAGCAGGCGCTCAAACGCGCGAACGAGGTCGCG
AGCCAGACTACTGCCGAGAACAAGCAACTTGAAGTGGACCTCTTGGAGCA
GGAAATGACAGATTTGAGGCGGGTGGAGGAAGCGCACGCTACAGTAGCGG
CTGCTCGTGCCCAAAAAACTGGCGTGCTGGAGGAGTACCGGTCGAGGGCG
CAGCAGGCGCTCAAACGCGCGAACGAGGTCGCGAGCCAGACTACTGCCGA
GAACAAGCAACTTGAAATAAATATGGCGAAACTATCCGCTGAAGTGGCAA
GGCAGCGACCATTATGGGAAGAAGCGAAGCAGCAGGAGAAGCTTCACCTC
GCGGAGTTGGCGGAAATAAATATGGCGAAACTATCCGCTGAAGTGGCAAG
GCAGCGACCATTATGGGAAGAAGCGAAGCAGCAGGAGAAGCTTCACCTCG
CGGAGTTGGCGGAACTCAAGAGCCAATTGAGTATTGCGGTATCAAACCGG
GAAAACACAGGGACTCAGGTGGCTTCGTTAGAAGAGTGCCTAGCGAGGGA
AGAAGAAGAAAGGAGCGCGACACTCGCCTCGGTGGTGCGACTTGAAGCCC
AGCTCAAGAGCCAATTGAGTATTGCGGTATCAAACCGGGAAAACACAGGG
ACTCAGGTGGCTTCGTTAGAAGAGTGCCTAGCGAGGGAAGAAGAAGAAAG
GAGCGCGACACTCGCCTCGGTGGTGCGACTTGAAGCCCAG
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