mRNA_H-elongata_contig57786.13248.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI) HSP 1 Score: 191 bits (485), Expect = 3.350e-59 Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYVG 372
++ +AVVGWI+VDQG+RFPG +Y+AIS SV AHDPMVASGNMT++LL VF+LEM+ G A+FGAA+GSGR PG+FG DP L NP KKARYEL+EIQHCRLAM AI GIATQAVLNGG FPY G
Sbjct: 112 VAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.540e-38 Identity = 68/123 (55.28%), Postives = 90/123 (73.17%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYV 369
++ +AVVGW+ VD GLR PG KY +S ++ AHD MV+ GNM +ML +LE+++G A+F AA GSGR PG+F DP LA + K ARY+LSE+++ RLAM A SGIATQAVL G +FPY+
Sbjct: 109 VAMLAVVGWLAVDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYL 230
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.320e-32 Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 4 SYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 366
+ +AV+GW+ VD GLR P AKY+ + +V AHD V SG+MT+ LLA+ LE++ G ++ + GS RA G+F FDP L +P K ARY++SEI++ RLAM A GIATQAVL G FPY
Sbjct: 102 AMLAVLGWVAVDMGLRLPVAKYAGYN-AVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A7S1Y167_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y167_9STRA) HSP 1 Score: 117 bits (293), Expect = 4.330e-30 Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCR-----------------------------LAMFAISGIATQAVLNGGTFPY 366
+ +A +GW+ D G RFPG YS IS ++ AHD MV +GNM +L +FV+E+LSG A++ AA GSGRAPG++GFDP L GN KKA Y L EI++ R LAM SGI TQA L G +FPY
Sbjct: 97 ICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 247
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.950e-30 Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCR-----------------------------LAMFAISGIATQAVLNGGTFPY 366
+ +A +GW+ D G RFPG YS IS ++ AHD MV +GNM +L +FV+E+LSG A++ AA GSGRAPG++GFDP L GN KKA Y L EI++ R LAM SGI TQA L G +FPY
Sbjct: 124 ICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN) HSP 1 Score: 112 bits (279), Expect = 2.630e-28 Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 366
L +A+VG++ VD G+ FPGA+Y +S S+ AHD MVASGNM MLLAV VLE+LS V V AA GSGR G+F +DP +E +EIQH RLAM A SG+ TQ+ L FPY
Sbjct: 98 LCMLAIVGYLTVDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A8J5XPQ1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPQ1_DIALT) HSP 1 Score: 110 bits (276), Expect = 4.740e-28 Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 10 VAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 366
+AV GW++VD G+ FPGA+Y + ++ AH+ MV SGNM ++L+AV +LE+ G+A++ A GSGRA G++ FDP A + +L EI++ RLAM A SGI TQA L+G PY
Sbjct: 82 LAVAGWLVVDLGIHFPGAQYEGLR-ALTAHNAMVESGNMWLLLIAVSILELAGGLALYEQANGSGRAAGDYKFDPLGYAQDEATLQELQLKEIKNGRLAMIAFSGIVTQAALSGRGLPY 199
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK) HSP 1 Score: 110 bits (276), Expect = 1.820e-27 Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCRLAMFAISGIATQAVLNG-GTFPYV 369
++ +AV+G + VD G R PGA ++ + ++ AHD MVA G M ++LLA E+L G AV+ AA GSGR PG+F DPF L G+P +K ++ EI++ RLAM ISGI TQA L G FPY+
Sbjct: 110 VAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI) HSP 1 Score: 108 bits (271), Expect = 3.510e-27 Identity = 63/127 (49.61%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPT---KKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYVG 372
+ +AVVG+ D G R PGA+++ S++ AHD VA+G M +LL V E +S VAV GSGR PG+FGFDP L P KKA EL EI HCRLAM A G+ TQAVL FPY G
Sbjct: 87 ICQLAVVGFAATDLGFRLPGAEHAVASIA--AHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6S9U0F0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9U0F0_CHRCT) HSP 1 Score: 105 bits (261), Expect = 1.680e-25 Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 10 VAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYV 369
+A VG++ D L PG+ Y +L DAHD VASG+M+ +LL + + E++S VA+ GSGRAPGEFGFDP A + +KKA E+ E+ + RLAM A SG+ TQAVL G +FPY+
Sbjct: 112 LATVGFVFTDF-LTLPGSIYQVSTL--DAHDVSVASGSMSQLLLWIGIAEIISVVAIQQMLAGSGRAPGEFGFDPMGFAKDASKKADLEMKELANGRLAMMAFSGMVTQAVLTGNSFPYL 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57786.13248.1 >prot_H-elongata_contig57786.13248.1 ID=prot_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp MVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVback to top mRNA from alignment at H-elongata_contig57786:850..1963+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57786.13248.1 ID=mRNA_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1114bp|location=Sequence derived from alignment at H-elongata_contig57786:850..1963+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57786:850..1963+ >mRNA_H-elongata_contig57786.13248.1 ID=mRNA_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig57786:850..1963+ (Himanthalia elongata Himel1 dioecious)back to top |