prot_H-elongata_contig57768.13245.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57768.13245.1
Unique Nameprot_H-elongata_contig57768.13245.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length108
Homology
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: D8LR58_ECTSI (Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR58_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.600e-51
Identity = 95/134 (70.90%), Postives = 99/134 (73.88%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDN-LGPLQVNPVYPSSDLLHTILAVCHP--------------------------ELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            LSPAAL L+FNDVSIFRVGG + SDAMLPVG SD+ LGPLQVNP YPSSDLLHT+LAVCHP                          ELL SN AGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKW E
Sbjct:  327 LSPAALHLDFNDVSIFRVGGQTVSDAMLPVGHSDSSLGPLQVNPFYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQELLNSNAAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWQE 460          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: CLP1_DICDI (Protein CLP1 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=CLP1_DICDI)

HSP 1 Score: 117 bits (294), Expect = 5.240e-29
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGGVSASDAM-LPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHPE----LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            LSP  + L+F DVSI+R GG  A+ A  LP+GTS  + PLQ+  VYPS D+ H+I A+ + +    +  SN AGF+YV+++DM+ +++ V+SP PG LPSRFL+ GT+KW+E
Sbjct:  347 LSPHYIVLDFKDVSIYRTGGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYVSDIDMETKKITVISPAPGPLPSRFLLLGTLKWME 458          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: A0A835YJV7_9STRA (Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.400e-28
Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHP----------------------ELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            L+P  L+L  + V + RVGG   S  +LPVG +  LGP +V+ V PS DLLH +LAVCHP                      E+   N AGFVYVTEVDM  RRL V+SPCPG LPS +L+ G ++W E
Sbjct:  331 LTPTLLELRMDSVRVCRVGGTQLSGGLLPVGQAALLGPTRVSMVKPSHDLLHAVLAVCHPVLKPDGTALVPGEEGGLDDAGQEIADCNVAGFVYVTEVDMVGRRLVVMSPCPGDLPSAYLLVGGIRWSE 459          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: C1N970_MICPC (Protein CLP1 homolog n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N970_MICPC)

HSP 1 Score: 112 bits (279), Expect = 4.580e-27
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVG-GVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH----PELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            LSP +  LEF  VSIF++G G SA  + LP+G   +  PL+V+ V PS  LL+ +L V H     ELL SN AGF++VT+VD+   R   L+PCPG LPSR LIAGT+KWIE
Sbjct:  302 LSPHSQTLEFGKVSIFKIGAGPSAPRSALPIGQESSADPLRVSTVAPSMSLLNAVLGVSHGKTQAELLSSNVAGFIFVTDVDVANGRFTYLTPCPGELPSRNLIAGTLKWIE 413          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: A0A7S0SUX6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SUX6_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 4.080e-26
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVG-GVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH----PELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            LSP +    F  VSIFRVG G  A  + LP+G   +  PL+V+ V PS  LL+++LAV H     ELL SN AGF+Y+TEVDM   R   LSP PG LPSR L+AG++KWIE
Sbjct:  219 LSPHSHTAAFGHVSIFRVGSGPRAPSSALPIGKESSADPLRVSTVAPSMSLLNSVLAVSHGKTQAELLSSNVAGFIYITEVDMANSRFTYLSPGPGELPSRNLLAGSLKWIE 330          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: A0A151Z7I4_9MYCE (Protein CLP1 homolog n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7I4_9MYCE)

HSP 1 Score: 108 bits (271), Expect = 7.630e-26
Identity = 50/112 (44.64%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGG-VSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHPE----LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            L P  + +EF DV I+R GG   A  + LP+GT   + PLQ++ V P+ D++H+ILA+ + +    +LKSN AGF+YVTEV+M+ +++  L+PC G +PS++L+ GT+KW+E
Sbjct:  321 LCPHNVVIEFKDVVIYRTGGGPQAPMSALPIGTQSQIDPLQLSEVSPNPDIIHSILAISYTKQPQNILKSNVAGFLYVTEVNMETKKITALAPCSGPIPSKYLLLGTLKWLE 432          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: F4PRU6_CAVFA (Protein CLP1 homolog n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRU6_CAVFA)

HSP 1 Score: 108 bits (270), Expect = 1.050e-25
Identity = 50/112 (44.64%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGG-VSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHPE----LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            L P    L+F D+ + + GG  +A  + LP+G    + PLQ+  V PS+D++H+ILAV + +    +LKSN AGF+YVTEV+++ +++ VL+PCPG +PS+FL+ GT+KW+E
Sbjct:  320 LCPHFTILDFKDIVVLKTGGGPAAPSSALPIGAQSVIDPLQLQEVTPSTDMIHSILAVSYTKSKQSILKSNIAGFLYVTEVNLETKKMTVLAPCPGLIPSKFLLMGTLKWLE 431          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: D5A9E3_PICSI (Protein CLP1 homolog n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A9E3_PICSI)

HSP 1 Score: 108 bits (269), Expect = 1.370e-25
Identity = 49/111 (44.14%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH---PELL-KSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            LSP A  + F+D+ I+R GG  A  + LP+G   +  P +V PV  +SDL+H +LAV +   PELL  SN AGF+Y+T++D+++++++ ++PCPG LPSR L+AG++ W++
Sbjct:  315 LSPHANVVNFSDLLIYRFGGPQAPRSALPIGAEPSADPTRVAPVTITSDLVHAVLAVSYAKEPELLLSSNVAGFIYITDIDIERKKISYIAPCPGELPSRLLLAGSLTWVD 425          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: L8H014_ACACA (Protein CLP1 homolog n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H014_ACACA)

HSP 1 Score: 107 bits (268), Expect = 1.950e-25
Identity = 50/112 (44.64%), Postives = 80/112 (71.43%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGG-VSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH---PE-LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 107
            LSP +  ++F D+SI+R+GG   A  + LP+G    + P ++  V PS +++H+I+ V H   PE LL++N AGF+Y+T+V+++K++L VL+PCPG LPSRF++ G +KW E
Sbjct:  316 LSPHSTLIDFADISIYRIGGGPRAPSSALPIGAERTITPTKLVEVQPSQEIVHSIIGVSHAKTPEALLETNLAGFLYITDVNVEKKKLTVLAPCPGPLPSRFVVVGALKWYE 427          
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: Q01DD5_OSTTA (Protein CLP1 homolog n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01DD5_OSTTA)

HSP 1 Score: 107 bits (268), Expect = 1.960e-25
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    1 LSPAALQLEFNDVSIFRVGGVSASDAM-LPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHP----ELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWI 106
            L+PA+    F+ +S++R+GG   + A  LP+G + +  P+++ PV PS+ LLH++LAV H     +LL SN AGF+Y+TEVDM +++   LSPCPG LPS  L+ G +KW+
Sbjct:  314 LAPASQTAYFSQISLYRIGGGPRAPASALPIGQTASTDPMRIAPVVPSTSLLHSVLAVSHGKTQGDLLNSNVAGFIYITEVDMIQKKFTYLSPCPGELPSNVLLVGNLKWL 424          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR58_ECTSI2.600e-5170.90Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosu... [more]
CLP1_DICDI5.240e-2949.11Protein CLP1 homolog n=1 Tax=Dictyostelium discoid... [more]
A0A835YJV7_9STRA1.400e-2846.51Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID... [more]
C1N970_MICPC4.580e-2752.68Protein CLP1 homolog n=2 Tax=Micromonas pusilla Ta... [more]
A0A7S0SUX6_9CHLO4.080e-2652.68Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A151Z7I4_9MYCE7.630e-2644.64Protein CLP1 homolog n=1 Tax=Tieghemostelium lacte... [more]
F4PRU6_CAVFA1.050e-2544.64Protein CLP1 homolog n=1 Tax=Cavenderia fasciculat... [more]
D5A9E3_PICSI1.370e-2544.14Protein CLP1 homolog n=1 Tax=Picea sitchensis TaxI... [more]
L8H014_ACACA1.950e-2544.64Protein CLP1 homolog n=1 Tax=Acanthamoeba castella... [more]
Q01DD5_OSTTA1.960e-2545.05Protein CLP1 homolog n=2 Tax=Ostreococcus tauri Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038238Clp1, C-terminal domain superfamilyGENE3D3.30.70.2410coord: 3..107
e-value: 3.8E-27
score: 96.7
IPR010655Pre-mRNA cleavage complex subunit Clp1, C-terminalPFAMPF06807Clp1coord: 1..107
e-value: 4.8E-32
score: 110.8
NoneNo IPR availablePANTHERPTHR12755CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1Pcoord: 1..107
NoneNo IPR availablePANTHERPTHR12755:SF6POLYRIBONUCLEOTIDE 5'-HYDROXYL-KINASE CLP1coord: 1..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57768contigH-elongata_contig57768:2357..3452 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57768.13245.1mRNA_H-elongata_contig57768.13245.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57768 2357..3452 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57768.13245.1 ID=prot_H-elongata_contig57768.13245.1|Name=mRNA_H-elongata_contig57768.13245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDNLGPLQVNPVYPSSDL
LHTILAVCHPELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIA
GTVKWIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038238Clp1_C_sf
IPR010655Clp1_C