mRNA_H-elongata_contig57742.13244.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 84.0 bits (206), Expect = 1.240e-16 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 22 EWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
EW KA E E+ + ++++V RP+D ++G+K ++K K G DG+VEKYK RLVA+GF QVE + Y E ++P + SIR+LL A D E+ +
Sbjct: 1009 EWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMD 1106
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 78.2 bits (191), Expect = 4.280e-16 Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 7 SPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
SP+ +W A E E+ + +N + V RP+ VV K ++KRK+ +DG+VE+YK RLVA+G+ QVE + Y E +SP T SIR LL +V +D ++
Sbjct: 40 SPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQLG 142
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 80.5 bits (197), Expect = 1.980e-15 Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 1 MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
M P+ W A E+ VK LY +V RP+D VVG K +++ K G DG++EKYK R+VAKGF QVE V Y + ++P ASIR LL A D E+ +
Sbjct: 289 MSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMD 393
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A5N6MV24_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MV24_9ASTR) HSP 1 Score: 79.3 bits (194), Expect = 5.090e-15 Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 22 EWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGEL 303
EWW+A E EM M +N ++ V +P D VV K +YK K DG VE++K RLVA+GF Q V Y E +SP ++R+LL AV K EL
Sbjct: 475 EWWQAMEEEMTAMYRNKTWELVPKPTDAKVVSCKWVYKLKQKPDGSVERFKARLVARGFSQEYGVNYEETFSPVAKLTTVRVLLAVAVSKQWEL 568
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A3S3PPW2_9ACAR (Gag-pol polyprotein-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PPW2_9ACAR) HSP 1 Score: 78.2 bits (191), Expect = 1.290e-14 Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 7 SPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
SPE +W +A E E+ + N + V RPKD V+ K ++KRK+ DG +E+YK RLV KGF Q V Y E +SP S+R++L AV + HF+
Sbjct: 358 SPEANKWKEAIEEELKSLKANNTWIDVTRPKDRKVISNKWVFKRKIKPDGSIERYKARLVVKGFNQQLGVDYTETFSPVVRFTSVRVILSLAVSMKMNIVHFD 460
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: UPI0015ADBDF9 (uncharacterized protein LOC118188897 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADBDF9) HSP 1 Score: 73.2 bits (178), Expect = 1.470e-13 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 40 ETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRH 309
E E+ + +N + V RP+ VV K ++KRK+ +DG+VE+YK RLVA+G+ QVE + Y E +SP T SIR LL +V +D ++
Sbjct: 2 EKELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDCQVHQ 91
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A2G2V8S1_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V8S1_CAPBA) HSP 1 Score: 74.7 bits (182), Expect = 2.130e-13 Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 1
Query: 25 WWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
W +A ++E+ ++ N +++ V P +N +G+K ++KRK+ DG ++KYK RLV KGF Q E + Y + YSP SIRML+ A V D ++ +
Sbjct: 584 WKEAVDSEIDSILSNHMWELVDLPPENKPLGSKWIFKRKMKTDGTIDKYKARLVVKGFNQKEGLDYFDTYSPVTRITSIRMLIALAAVYDLQIHQMD 680
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY) HSP 1 Score: 74.7 bits (182), Expect = 2.160e-13 Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 1 MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
M P+ +W AE E+ VK L+ +V +PK +V K +Y K G DG+V KYK RLVA+GF Q+E V Y E ++P SIR LL A V + E+ +
Sbjct: 976 MARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMD 1080
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A4Y9YQU6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9YQU6_9APHY) HSP 1 Score: 74.3 bits (181), Expect = 2.870e-13 Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 19 GEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
G+W KA + E+ +V+N ++ V P +G++ +++ K DG +E+YK RLVAKGF Q Y E ++PTP ASIR +LV A ++D EL +
Sbjct: 298 GKWLKAAQDEVQSLVQNGTFELVQLPPGRKAIGSQWVFRVKRNADGSIERYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILVLAALEDLELESVD 396
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY) HSP 1 Score: 73.9 bits (180), Expect = 3.510e-13 Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 1 MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
M P+ +W AE E+ VK L+ +V +PK +V K +Y K G DG+V KYK RLVA+GF Q+E V Y E ++P SIR LL A V + E+ +
Sbjct: 152 MARPDAPQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMD 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57742.13244.1 >prot_H-elongata_contig57742.13244.1 ID=prot_H-elongata_contig57742.13244.1|Name=mRNA_H-elongata_contig57742.13244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQback to top mRNA from alignment at H-elongata_contig57742:1222..1542- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57742.13244.1 ID=mRNA_H-elongata_contig57742.13244.1|Name=mRNA_H-elongata_contig57742.13244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig57742:1222..1542- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57742:1222..1542- >mRNA_H-elongata_contig57742.13244.1 ID=mRNA_H-elongata_contig57742.13244.1|Name=mRNA_H-elongata_contig57742.13244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig57742:1222..1542- (Himanthalia elongata Himel1 dioecious)back to top |