mRNA_H-elongata_contig57740.13243.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI) HSP 1 Score: 153 bits (386), Expect = 4.540e-41 Identity = 73/92 (79.35%), Postives = 85/92 (92.39%), Query Frame = 1
Query: 22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
P +VQ+TYRTLLSLYHKCLDNLRPG PVK VVE AHRYL++KSP LE+ +TK+LGFSLG+DYRE++MV+SAKN TK+KDGMVFNLSVGLQDV
Sbjct: 298 PKKVQNTYRTLLSLYHKCLDNLRPGEPVKGVVEKAHRYLQDKSPHLEKSITKTLGFSLGLDYRESAMVISAKNSTKMKDGMVFNLSVGLQDV 389
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.270e-21 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
P +V+ Y LL + +C D LR GVP+KDV E A +LRE+ L ++TKSLGF+LG+D+RE ++ ++AKN + +DGMVF+L+VGL DV
Sbjct: 95 PPRVEEAYAALLQAHTRCGDALRGGVPLKDVYETARAFLRERHADLLPHLTKSLGFALGLDFRERALDINAKNAARARDGMVFSLNVGLADV 186
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A482SIP5_9ARCH (M24 family metallopeptidase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIP5_9ARCH) HSP 1 Score: 93.2 bits (230), Expect = 3.390e-21 Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
P +++ TY TLL+ YH CL+ + PG +KDV E A YL+ K L ++ KSLGF++G+++R+ ++VL+ N TK GMVF LS+GL +V
Sbjct: 115 PPKIEDTYATLLATYHVCLEKMVPGNELKDVYEAARNYLKTKDASLLSFLPKSLGFAIGLEFRDPTLVLNQTNTTKFVPGMVFTLSLGLHNV 206
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A8H7ETV3_9FUNG (FACT complex subunit n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ETV3_9FUNG) HSP 1 Score: 95.1 bits (235), Expect = 1.080e-20 Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 10 FSVSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
F + PS+ Q Y L+ L H+ LD +R GV +KD+ + A Y+R K P LE++ TKS+GF +GI++REAS +L+ KN LK+GMV NLS+G D+
Sbjct: 294 FLIDPSKTQEKNYEFLVDLQHRVLDTIRDGVKIKDIYQKALSYIRAKRPDLEKHFTKSIGFGMGIEFREASYLLTGKNVRDLKNGMVLNLSLGFADL 390
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A8H7SB81_9FUNG (FACT complex subunit n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SB81_9FUNG) HSP 1 Score: 94.0 bits (232), Expect = 2.760e-20 Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 10 FSVSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
F + P++ Q Y LL L K LDN+ GV ++DV E A Y++ K P LE+++T+SLGF +GI++REAS VL +N +L++GMV NLSVG D+
Sbjct: 294 FLIDPNKTQEKNYEFLLELQKKILDNIHDGVKIRDVYESAMEYIKTKRPDLEKHLTRSLGFGMGIEFREASYVLHGRNVRELRNGMVLNLSVGFSDL 390
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A367KJE2_RHIST (FACT complex subunit (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KJE2_RHIST) HSP 1 Score: 91.3 bits (225), Expect = 2.420e-19 Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 10 FSVSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
F + P++VQ Y LL + +K LDN++ GV ++D+ + A ++R K P LE+ TK++GF +GI++REAS VL+AKN +LK+GM+ N+ VG D+
Sbjct: 168 FLIDPTKVQEKNYEFLLEVQNKILDNIKEGVKIRDIYQKAVAHVRSKRPDLEKNFTKNVGFGMGIEFREASYVLNAKNTRELKNGMILNVQVGFSDL 264
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A261Y734_9FUNG (FACT complex subunit n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y734_9FUNG) HSP 1 Score: 90.9 bits (224), Expect = 3.330e-19 Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 1
Query: 16 VSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
+ P++ Q TY LL L HK +++++ GV +KDV A +Y+R K LEQY KSLG S+GI++RE++ ++AKN+ +L+ GM+ NLSVG Q +
Sbjct: 397 IDPNKTQEKTYEFLLDLQHKIIESVKEGVKMKDVYNQALQYIRSKRSDLEQYFVKSLGSSMGIEFRESNSTINAKNNRELESGMILNLSVGFQGI 491
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A7R9W7A9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7A9_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.140e-18 Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYL-REKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
P +V TY TLLS+ CL + PG P+K V A ++L RE L + + K+LGFS+G+D+RE S+VLSAKN + GMVFNL+VGL DV
Sbjct: 123 PKEVSKTYETLLSMQEACLKAMVPGKPLKTVYLAAVKHLKREGREDLVKRLPKNLGFSVGLDFREPSLVLSAKNPAIFRSGMVFNLAVGLSDV 215
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A7S0XEF3_9STRA (FACT complex subunit (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEF3_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.500e-18 Identity = 40/92 (43.48%), Postives = 64/92 (69.57%), Query Frame = 1
Query: 22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
P +++ TY TLLSLY+KCL+ + G +KDV E A +L KS L ++ K+LGF++GI++R++++VL+ N K + MVF L++G Q+V
Sbjct: 212 PIKIEQTYNTLLSLYNKCLEAMVVGNELKDVYETAVSFLTTKSSDLLPHLPKTLGFAIGIEFRDSTLVLNGNNKVKFTENMVFTLTIGFQNV 303
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A8H7PFC7_MORIS (FACT complex subunit n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PFC7_MORIS) HSP 1 Score: 87.4 bits (215), Expect = 5.450e-18 Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 16 VSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
V P++ Q Y+ LL + HK LD +R GV +D+ A ++R K P LE++ K+LGF +GI++RE + V++AKN +L++GM NLSVG QD+
Sbjct: 272 VDPTKTQEKNYQFLLDVQHKVLDAMRDGVKFRDIYAKALAFVRNKRPDLEKHFVKTLGFGIGIEFREGNYVINAKNTKELRNGMTINLSVGFQDL 366 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57740.13243.1 >prot_H-elongata_contig57740.13243.1 ID=prot_H-elongata_contig57740.13243.1|Name=mRNA_H-elongata_contig57740.13243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp ASSFSVSPSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSback to top mRNA from alignment at H-elongata_contig57740:2152..3326- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57740.13243.1 ID=mRNA_H-elongata_contig57740.13243.1|Name=mRNA_H-elongata_contig57740.13243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at H-elongata_contig57740:2152..3326- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57740:2152..3326- >mRNA_H-elongata_contig57740.13243.1 ID=mRNA_H-elongata_contig57740.13243.1|Name=mRNA_H-elongata_contig57740.13243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig57740:2152..3326- (Himanthalia elongata Himel1 dioecious)back to top |