mRNA_H-elongata_contig57740.13243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57740.13243.1
Unique NamemRNA_H-elongata_contig57740.13243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 4.540e-41
Identity = 73/92 (79.35%), Postives = 85/92 (92.39%), Query Frame = 1
Query:   22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            P +VQ+TYRTLLSLYHKCLDNLRPG PVK VVE AHRYL++KSP LE+ +TK+LGFSLG+DYRE++MV+SAKN TK+KDGMVFNLSVGLQDV
Sbjct:  298 PKKVQNTYRTLLSLYHKCLDNLRPGEPVKGVVEKAHRYLQDKSPHLEKSITKTLGFSLGLDYRESAMVISAKNSTKMKDGMVFNLSVGLQDV 389          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.270e-21
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            P +V+  Y  LL  + +C D LR GVP+KDV E A  +LRE+   L  ++TKSLGF+LG+D+RE ++ ++AKN  + +DGMVF+L+VGL DV
Sbjct:   95 PPRVEEAYAALLQAHTRCGDALRGGVPLKDVYETARAFLRERHADLLPHLTKSLGFALGLDFRERALDINAKNAARARDGMVFSLNVGLADV 186          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A482SIP5_9ARCH (M24 family metallopeptidase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIP5_9ARCH)

HSP 1 Score: 93.2 bits (230), Expect = 3.390e-21
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            P +++ TY TLL+ YH CL+ + PG  +KDV E A  YL+ K   L  ++ KSLGF++G+++R+ ++VL+  N TK   GMVF LS+GL +V
Sbjct:  115 PPKIEDTYATLLATYHVCLEKMVPGNELKDVYEAARNYLKTKDASLLSFLPKSLGFAIGLEFRDPTLVLNQTNTTKFVPGMVFTLSLGLHNV 206          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A8H7ETV3_9FUNG (FACT complex subunit n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ETV3_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-20
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   10 FSVSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            F + PS+ Q   Y  L+ L H+ LD +R GV +KD+ + A  Y+R K P LE++ TKS+GF +GI++REAS +L+ KN   LK+GMV NLS+G  D+
Sbjct:  294 FLIDPSKTQEKNYEFLVDLQHRVLDTIRDGVKIKDIYQKALSYIRAKRPDLEKHFTKSIGFGMGIEFREASYLLTGKNVRDLKNGMVLNLSLGFADL 390          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A8H7SB81_9FUNG (FACT complex subunit n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SB81_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 2.760e-20
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   10 FSVSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            F + P++ Q   Y  LL L  K LDN+  GV ++DV E A  Y++ K P LE+++T+SLGF +GI++REAS VL  +N  +L++GMV NLSVG  D+
Sbjct:  294 FLIDPNKTQEKNYEFLLELQKKILDNIHDGVKIRDVYESAMEYIKTKRPDLEKHLTRSLGFGMGIEFREASYVLHGRNVRELRNGMVLNLSVGFSDL 390          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A367KJE2_RHIST (FACT complex subunit (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KJE2_RHIST)

HSP 1 Score: 91.3 bits (225), Expect = 2.420e-19
Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   10 FSVSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            F + P++VQ   Y  LL + +K LDN++ GV ++D+ + A  ++R K P LE+  TK++GF +GI++REAS VL+AKN  +LK+GM+ N+ VG  D+
Sbjct:  168 FLIDPTKVQEKNYEFLLEVQNKILDNIKEGVKIRDIYQKAVAHVRSKRPDLEKNFTKNVGFGMGIEFREASYVLNAKNTRELKNGMILNVQVGFSDL 264          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A261Y734_9FUNG (FACT complex subunit n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y734_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 3.330e-19
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   16 VSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            + P++ Q  TY  LL L HK +++++ GV +KDV   A +Y+R K   LEQY  KSLG S+GI++RE++  ++AKN+ +L+ GM+ NLSVG Q +
Sbjct:  397 IDPNKTQEKTYEFLLDLQHKIIESVKEGVKMKDVYNQALQYIRSKRSDLEQYFVKSLGSSMGIEFRESNSTINAKNNRELESGMILNLSVGFQGI 491          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A7R9W7A9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7A9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.140e-18
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYL-REKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            P +V  TY TLLS+   CL  + PG P+K V   A ++L RE    L + + K+LGFS+G+D+RE S+VLSAKN    + GMVFNL+VGL DV
Sbjct:  123 PKEVSKTYETLLSMQEACLKAMVPGKPLKTVYLAAVKHLKREGREDLVKRLPKNLGFSVGLDFREPSLVLSAKNPAIFRSGMVFNLAVGLSDV 215          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A7S0XEF3_9STRA (FACT complex subunit (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEF3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.500e-18
Identity = 40/92 (43.48%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   22 PSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            P +++ TY TLLSLY+KCL+ +  G  +KDV E A  +L  KS  L  ++ K+LGF++GI++R++++VL+  N  K  + MVF L++G Q+V
Sbjct:  212 PIKIEQTYNTLLSLYNKCLEAMVVGNELKDVYETAVSFLTTKSSDLLPHLPKTLGFAIGIEFRDSTLVLNGNNKVKFTENMVFTLTIGFQNV 303          
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Match: A0A8H7PFC7_MORIS (FACT complex subunit n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PFC7_MORIS)

HSP 1 Score: 87.4 bits (215), Expect = 5.450e-18
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   16 VSPSQVQS-TYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKSPGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV 297
            V P++ Q   Y+ LL + HK LD +R GV  +D+   A  ++R K P LE++  K+LGF +GI++RE + V++AKN  +L++GM  NLSVG QD+
Sbjct:  272 VDPTKTQEKNYQFLLDVQHKVLDAMRDGVKFRDIYAKALAFVRNKRPDLEKHFVKTLGFGIGIEFREGNYVINAKNTKELRNGMTINLSVGFQDL 366          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57740.13243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI4.540e-4179.35FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA2.270e-2150.00FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A482SIP5_9ARCH3.390e-2145.65M24 family metallopeptidase (Fragment) n=1 Tax=arc... [more]
A0A8H7ETV3_9FUNG1.080e-2047.42FACT complex subunit n=1 Tax=Apophysomyces ossifor... [more]
A0A8H7SB81_9FUNG2.760e-2047.42FACT complex subunit n=1 Tax=Mucor circinatus TaxI... [more]
A0A367KJE2_RHIST2.420e-1944.33FACT complex subunit (Fragment) n=1 Tax=Rhizopus s... [more]
A0A261Y734_9FUNG3.330e-1945.26FACT complex subunit n=1 Tax=Bifiguratus adelaidae... [more]
A0A7R9W7A9_9STRA1.140e-1850.54FACT complex subunit (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0XEF3_9STRA3.500e-1843.48FACT complex subunit (Fragment) n=2 Tax=Chromulina... [more]
A0A8H7PFC7_MORIS5.450e-1844.21FACT complex subunit n=1 Tax=Mortierella isabellin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57740contigH-elongata_contig57740:2152..3326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.6e-35
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57740.13243.1prot_H-elongata_contig57740.13243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57740 2152..3326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.333784-CDS-H-elongata_contig57740:2151..22001622930937.333784-CDS-H-elongata_contig57740:2151..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57740 2152..2200 -
1691679632.1431653-CDS-H-elongata_contig57740:2151..22001691679632.1431653-CDS-H-elongata_contig57740:2151..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57740 2152..2200 -
1622930937.3828013-CDS-H-elongata_contig57740:2453..25241622930937.3828013-CDS-H-elongata_contig57740:2453..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57740 2454..2524 -
1691679632.1539571-CDS-H-elongata_contig57740:2453..25241691679632.1539571-CDS-H-elongata_contig57740:2453..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57740 2454..2524 -
1622930937.4041982-CDS-H-elongata_contig57740:3149..33261622930937.4041982-CDS-H-elongata_contig57740:3149..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57740 3150..3326 -
1691679632.162591-CDS-H-elongata_contig57740:3149..33261691679632.162591-CDS-H-elongata_contig57740:3149..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57740 3150..3326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57740.13243.1

>prot_H-elongata_contig57740.13243.1 ID=prot_H-elongata_contig57740.13243.1|Name=mRNA_H-elongata_contig57740.13243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
ASSFSVSPSQVQSTYRTLLSLYHKCLDNLRPGVPVKDVVELAHRYLREKS
PGLEQYMTKSLGFSLGIDYREASMVLSAKNHTKLKDGMVFNLSVGLQDV
back to top

mRNA from alignment at H-elongata_contig57740:2152..3326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57740.13243.1 ID=mRNA_H-elongata_contig57740.13243.1|Name=mRNA_H-elongata_contig57740.13243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at H-elongata_contig57740:2152..3326- (Himanthalia elongata Himel1 dioecious)
GCCTCTTCTTTTTCTGTCTCGCCTTCCCAGGTTCAGAGTACCTACCGCAC GCTTCTGTCTCTCTACCACAAATGCCTCGACAATCTACGGCCGGGGGTGC CGGTGAAAGACGTGGTGGAATTGGCTCACCGGTACCTAAGGGAGAAGTCG CCCGGCCTCGAGCAGTACATGACCAAGGTAAGTCAGCGGCAGCACGGAAC AAGACGGATTTCCACGCTTTACTGTGCGCGAGAGCTCAGAGGAGATTGTT GGGAAAACTTTTTAGGCCGTAGTCTAGAAGAGTCTGGAGCGAGAGCTTCG CGGATCGAGCGTTTCTCGCATTTTTTTCATTCCCCCCCAACCCTTTTTGA TAGGTATCTTGAAACACATTCCGCTGTGCAGTCGGGGCCTGTCCACGGTA CCTTTGACCTTTTGGTGGCACTCGTCTTCGCCTCCTTTTTTTTTTAGGAT AGGTGATCACAGTTGGGTGTCAGGACCGAATTGCCGTGACCATACCATCC TTCTCATAACAATTCAAATTACTCGCTTCTTCAATTTATGTCGCTTTTTC GGAAGTCTCTTGCATCGGCTGTGGTCTTTCTCTTGAGTGGGAGAGGGGAG ATTGTCGTAGTCGTCCCCGCTTTATCCCTACCGTAGTGGAGGCCAACGTG TGCGACTGAACGTACGCACAAAAATAGCTAAACTTGGTAAAAAATGAAAG CTTTTTACTATGACTCACAATTTTTCTTGCTTCTGCTTTGGTCTTTTATG TCTCCAATGCCCATTAATATACCGGTATCTATGTGGGCGGTAACGCAACC AGAGCCTGGGATTCTCTCTAGGTATCGACTACAGGGAGGCGTCGATGGTC CTCAGCGCCAAGAACCATACCAAGTGAGAGAGAAGGCTGGGAGACGGGGG TGTCTCTGTGGGCGGTCTTTCGATATCCTCGCAGTACCGGGAACCACTTT CTGCCCCATCTCTTATCTCTGCCTCTGCCTTTACCTCTTGATCTTTATCT TAATCTTAATCTTTCAACGCATACACGCACTCTGTCGATTTTTTCCAAAT GTTTTGGGCCATATACGCGTGTTGCCGTGTTTCTGGCTACTGTACTTGTT TTGACGTTCGGCGCGAGCGAGTACAGACTGAAGGACGGTATGGTGTTCAA CCTGAGTGTGGGGCTGCAGGACGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57740:2152..3326-

>mRNA_H-elongata_contig57740.13243.1 ID=mRNA_H-elongata_contig57740.13243.1|Name=mRNA_H-elongata_contig57740.13243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig57740:2152..3326- (Himanthalia elongata Himel1 dioecious)
GCCTCTTCTTTTTCTGTCTCGCCTTCCCAGGTTCAGAGTACCTACCGCAC
GCTTCTGTCTCTCTACCACAAATGCCTCGACAATCTACGGCCGGGGGTGC
CGGTGAAAGACGTGGTGGAATTGGCTCACCGGTACCTAAGGGAGAAGTCG
CCCGGCCTCGAGCAGTACATGACCAAGGCCTCTTCTTTTTCTGTCTCGCC
TTCCCAGGTTCAGAGTACCTACCGCACGCTTCTGTCTCTCTACCACAAAT
GCCTCGACAATCTACGGCCGGGGGTGCCGGTGAAAGACGTGGTGGAATTG
GCTCACCGGTACCTAAGGGAGAAGTCGCCCGGCCTCGAGCAGTACATGAC
CAAGAGCCTGGGATTCTCTCTAGGTATCGACTACAGGGAGGCGTCGATGG
TCCTCAGCGCCAAGAACCATACCAAAGCCTGGGATTCTCTCTAGGTATCG
ACTACAGGGAGGCGTCGATGGTCCTCAGCGCCAAGAACCATACCAAACTG
AAGGACGGTATGGTGTTCAACCTGAGTGTGGGGCTGCAGGACGTGACTGA
AGGACGGTATGGTGTTCAACCTGAGTGTGGGGCTGCAGGACGTG
back to top