mRNA_H-elongata_contig57735.13242.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE) HSP 1 Score: 188 bits (478), Expect = 2.460e-53 Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = 1
Query: 1 RWMPLQGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
RWMPL+GLSH EQL+VFLNLYHVMLLHA+F+ GPP S LR AS+FTTLCYEVGG+++SMADLEHCVLRA+TSQP Q LSKLIIP+TEYPFSLR+ EPRVSFALNCG
Sbjct: 1401 RWMPLEGLSHNEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVLRAKTSQPNQFLSKLIIPTTEYPFSLRRAEPRVSFALNCG 1506
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI) HSP 1 Score: 187 bits (474), Expect = 8.490e-53 Identity = 85/106 (80.19%), Postives = 98/106 (92.45%), Query Frame = 1
Query: 1 RWMPLQGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
RWMPL+GLSH+EQL+VFLNLYHVMLLHA+F+ GPP S LR AS+FTTLCYEVGG+++SMADLEHCV+RA+TSQP Q LSKLIIP+TEYPF LR+ EPRVSFALNCG
Sbjct: 1494 RWMPLEGLSHSEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVMRAKTSQPNQFLSKLIIPTTEYPFCLRRAEPRVSFALNCG 1599
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A835Z2G2_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2G2_9STRA) HSP 1 Score: 133 bits (334), Expect = 5.070e-36 Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 1 RWMPLQGLSH-AEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
RW+ L G +E+L++FLNLYHV+L+HA+ L GPP S+L+AAS+F +L YEV G++LS+A+LEH V+RA S P+Q LSK +PS Y F+L PEPRVSFALNCG
Sbjct: 77 RWLDLSGPGDPSERLALFLNLYHVLLMHAHLLVGPPGSALKAASYFNSLSYEVAGDVLSLAELEHGVIRAPLSAPRQCLSKFFLPSERYAFALTAPEPRVSFALNCG 183
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A836C9S5_9STRA (DUF547 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S5_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.210e-33 Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 1 RWMPLQ-----GLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
RW+ L G +E+L++FLNLYH+M+LHAY L GPP +++ +S+ + L YE+GG++LS+A+LEHCV+RA + KQ SKL++PS +Y F+L EPRV+FAL CG
Sbjct: 12 RWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 122
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A7S3SJG3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SJG3_EMIHU) HSP 1 Score: 113 bits (283), Expect = 4.100e-28 Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 13 LQGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
L GL ++L+ FLN+YH M+ HAY L GPPSS L+A SFF T+ Y+VGG++ ++A+LEH VLRA + +PK SK ++P + Y F+L + R++FAL+CG
Sbjct: 106 LDGLDEEQKLAFFLNVYHTMIQHAYSLLGPPSSLLKAISFFNTIAYQVGGDVFTLAELEHNVLRAPSCRPKSFFSKWVLPKSSYSFALTTADYRLNFALSCG 207
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A7R9Y7B0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7B0_9STRA) HSP 1 Score: 111 bits (277), Expect = 6.090e-28 Identity = 46/104 (44.23%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 7 MPLQGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
+ LQ LSH E++ F+N YH++L+HAY + GPP + + A +F + YE G ++ S+A+LEH ++RA + P Q LSKL++P++ Y ++L +PE R++F LNCG
Sbjct: 49 LDLQVLSHLEKVCFFVNTYHLLLMHAYLVLGPPRQAAKWARYFNAIAYECGDDIFSLAELEHNIIRAPMAAPSQFLSKLVLPTSVYKYALTEPEMRINFVLNCG 152
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A7R9Y7X5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7X5_9STRA) HSP 1 Score: 111 bits (277), Expect = 8.210e-28 Identity = 46/104 (44.23%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 7 MPLQGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
+ LQ LSH E++ F+N YH++L+HAY + GPP + + A +F + YE G ++ S+A+LEH ++RA + P Q LSKL++P++ Y ++L +PE R++F LNCG
Sbjct: 49 LDLQVLSHLEKVCFFVNTYHLLLMHAYLVLGPPRQAAKWARYFNAIAYECGDDIFSLAELEHNIIRAPMAAPSQFLSKLVLPTSVYKYALTEPEMRINFVLNCG 152
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: R1DA17_EMIHU (DUF547 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA17_EMIHU) HSP 1 Score: 113 bits (283), Expect = 4.740e-27 Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 13 LQGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
L GL ++L+ FLN+YH M+ HAY L GPPSS L+A SFF T+ Y+VGG++ ++A+LEH VLRA + +PK SK ++P + Y F+L + R++FAL+CG
Sbjct: 855 LDGLDEEQKLAFFLNVYHTMIQHAYSLLGPPSSLLKAISFFNTIAYQVGGDVFTLAELEHNVLRAPSCRPKSFFSKWVLPKSSYSFALTTADYRLNFALSCG 956
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: A0A836CH08_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH08_9STRA) HSP 1 Score: 113 bits (283), Expect = 4.800e-27 Identity = 52/100 (52.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 19 GLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
G +E+L++FLNLYH+M+LHAY L GPP +++ ++F L YE ++LS+A+LEH VLRA + P+Q ++KL+IPS Y F+L PEPR+SFAL+CG
Sbjct: 1226 GGDGSERLALFLNLYHLMVLHAYLLVGPPGGAIKWPAYFNGLSYEFAHDVLSLAELEHKVLRAPLTPPQQFMAKLVIPSEGYRFALTVPEPRISFALSCG 1325
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Match: B7FYB5_PHATC (tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB5_PHATC) HSP 1 Score: 110 bits (275), Expect = 5.770e-26 Identity = 42/101 (41.58%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 16 QGLSHAEQLSVFLNLYHVMLLHAYFLHGPPSSSLRAASFFTTLCYEVGGELLSMADLEHCVLRARTSQPKQLLSKLIIPSTEYPFSLRQPEPRVSFALNCG 318
+GL +L+ FLN+YH M++HA+ + GPP SSL+ +F + YEVG ++ S+ +LEHC++R++ + P Q +S+ ++P ++Y F+L + + R++FALNCG
Sbjct: 833 RGLPEESRLAFFLNVYHTMIMHAFLVLGPPGSSLKWIGYFNNIAYEVGDDVFSLTELEHCIIRSKMAYPSQFISRFVLPKSQYAFALTKADYRINFALNCG 933 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57735.13242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57735.13242.1 >prot_H-elongata_contig57735.13242.1 ID=prot_H-elongata_contig57735.13242.1|Name=mRNA_H-elongata_contig57735.13242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp MDAVAGSFSCRAAVRFSQPVSRHALARLLPPWPPQQLLEGCEFLHHAMLRback to top mRNA from alignment at H-elongata_contig57735:1312..3742+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57735.13242.1 ID=mRNA_H-elongata_contig57735.13242.1|Name=mRNA_H-elongata_contig57735.13242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig57735:1312..3742+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57735:1312..3742+ >mRNA_H-elongata_contig57735.13242.1 ID=mRNA_H-elongata_contig57735.13242.1|Name=mRNA_H-elongata_contig57735.13242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig57735:1312..3742+ (Himanthalia elongata Himel1 dioecious)back to top |