mRNA_H-elongata_contig116964.1324.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116964.1324.1
Unique NamemRNA_H-elongata_contig116964.1324.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116964.1324.1 vs. uniprot
Match: A0A6H5KCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA4_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.840e-55
Identity = 108/218 (49.54%), Postives = 134/218 (61.47%), Query Frame = 1 
Query:  130 PPTAARFRFVRGGTPGDSATVPMTRDAVHESMMDIYLDRREELGGGGSGDLGSPKDIGDLLFLARSSQPGSIGHELQRRGLRFFPKEAFVDAGWGEDLSPSAAAEEARYSWGAGTPLPREIPMSDLELLRDEEGRVRLVLWDPCGPDHPLIRAVEGEPRDGATVEVLNFPPRGKKRGEEGG----------SIADGHEFDELRSAVVFKRWFNVEQQE 753
            P +  RFR +RGG P D+A    T +A    ++++ LDR +     G G   +P+D+ + LFL RSSQPGSIG +LQRRG+R FP+EAF DA             EA   W  G PLP + PM+  EL RD EGRVRLVLWDPCGPDHPL+RAV  EP   A+VEVLNF   G +R  +GG          S   G +FDE RSAVVF++WF VEQQ+
Sbjct:   98 PASVVRFRVLRGGNPRDNAAAA-TPEA---DLVEVSLDRPDS----GGGMANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADA-------------EAEVGWAGGRPLPLDTPMT--ELPRDGEGRVRLVLWDPCGPDHPLVRAVSVEPSKDASVEVLNFLLPGDRRRHDGGEGTAGDGGGCSSGYGRDFDESRSAVVFRKWFTVEQQQ 292
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BLAST of mRNA_H-elongata_contig116964.1324.1 vs. uniprot
Match: D7FS11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS11_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.540e-49
Identity = 107/228 (46.93%), Postives = 135/228 (59.21%), Query Frame = 1 
Query:  130 PPTAARFRFVRGGTPGDSATVPMTRDAVHESMMDIYLDRREELGGGGSGDLGSPKDIGDLLFLARSSQPGSIGHELQRRGLRFFPKEAFVDA----GWGEDLSPSAA----AEE--ARYSWGAGTPLPREIPMSDLELLRDEEGRVRLVLWDPCGPDHPLIRAVEGEPRDGATVEVLNFP-PRGKKR---GE----EGGSIADGH--EFDELRSAVVFKRWFNVEQQE 753
            P +  RFR +RGG P D+A            ++++ LDR +     G G   +P+D+ + LFL RSSQPGSIG +LQRRG+R FP+EAF DA    G G             EE  +   W  G PLP + PM+  EL RD EGRVRLVLWDPCGP HPL+RAV  EP   A+V VLNF  P   +R   GE    EGG  + G+  +F+E RSAVVF++WF VEQQ+
Sbjct:   80 PASVVRFRVLRGGNPRDNAAAXXXAATPEADLVEVSLDRPDS----GGGMANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADAEAELGAGXXXXXXXXXXXXGEEGLSGVGWTGGRPLPLDTPMT--ELPRDGEGRVRLVLWDPCGPTHPLVRAVSVEPSKDASVMVLNFLLPEDSRRHDGGEGTAGEGGGCSSGYGSDFNESRSAVVFRKWFTVEQQQ 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116964.1324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA4_9PHAE3.840e-5549.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS11_ECTSI1.540e-4946.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116964contigH-elongata_contig116964:23..1012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size777
Cds size777
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.1500602-CDS-H-elongata_contig116964:22..2371622929680.1500602-CDS-H-elongata_contig116964:22..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116964 23..237 -
1691679116.992633-CDS-H-elongata_contig116964:22..2371691679116.992633-CDS-H-elongata_contig116964:22..237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116964 23..237 -
1622929680.1634176-CDS-H-elongata_contig116964:450..10121622929680.1634176-CDS-H-elongata_contig116964:450..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116964 451..1012 -
1691679117.0014575-CDS-H-elongata_contig116964:450..10121691679117.0014575-CDS-H-elongata_contig116964:450..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116964 451..1012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116964.1324.1prot_H-elongata_contig116964.1324.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116964 23..1012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116964.1324.1

>prot_H-elongata_contig116964.1324.1 ID=prot_H-elongata_contig116964.1324.1|Name=mRNA_H-elongata_contig116964.1324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MDRGGYDSKRHENNMHGISANNDCNSELASSDPTLAPKIPFIQPPTAARF
RFVRGGTPGDSATVPMTRDAVHESMMDIYLDRREELGGGGSGDLGSPKDI
GDLLFLARSSQPGSIGHELQRRGLRFFPKEAFVDAGWGEDLSPSAAAEEA
RYSWGAGTPLPREIPMSDLELLRDEEGRVRLVLWDPCGPDHPLIRAVEGE
PRDGATVEVLNFPPRGKKRGEEGGSIADGHEFDELRSAVVFKRWFNVEQQ
EARGSRHA*
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mRNA from alignment at H-elongata_contig116964:23..1012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116964.1324.1 ID=mRNA_H-elongata_contig116964.1324.1|Name=mRNA_H-elongata_contig116964.1324.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at H-elongata_contig116964:23..1012- (Himanthalia elongata Himel1 dioecious)
ATGGACCGAGGAGGGTACGACAGTAAGAGACACGAGAACAATATGCACGG
AATAAGCGCCAACAATGATTGCAACTCCGAGCTCGCCTCCTCCGACCCAA
CGCTGGCGCCGAAAATCCCTTTCATACAGCCCCCAACGGCCGCGCGCTTC
CGCTTCGTCCGCGGGGGCACTCCCGGCGACTCCGCGACCGTGCCAATGAC
ACGAGACGCCGTCCACGAGTCGATGATGGATATATATTTGGATCGACGGG
AGGAGCTGGGGGGTGGGGGAAGTGGGGACCTTGGCAGCCCTAAAGATATT
GGCGATTTGCTTTTTTTGGCGAGGTCAAGCCAACCGGGTTCCATCGGGCA
CGAGCTTCAGCGGCGAGGGCTTCGATTTTTCCCGAAAGAGGCGTTTGTGG
ACGCGGGGTGGGGGGAGGATCTGTCGCCATCAGCGGCGGCCGAGGAGGCC
CGATATAGTTGGGGAGCGGGGACGCCTTTGCCGCGAGAGATCCCGATGAG
TGACCTGGAACTGCTTCGGGATGAGGAGGGGAGGGTGCGACTGGTATTGT
GGGACCCTTGCGGTGGGTGAGCTTCGATCTCGATCTCGCCGGCATATCGT
TCAAACCGCCACACGCAGATTTTCGGGTGTATCCTAGGCCCCGCATCTTA
TTATTTCAAGTAGTTAAGTAGAATCATCGTGGAAAATGACGGAGGACAGT
CATTGCTAAAAGAGCGTCGTGTTGCGCGCGATTTTTTTTTTATTTGTTCA
TCCCGGAACTTTGCCGCCAGAACAGGTCCGGATCATCCGTTGATTCGAGC
GGTAGAAGGCGAACCTAGGGACGGAGCGACGGTGGAGGTGCTTAATTTCC
CCCCGCGAGGGAAGAAGCGCGGGGAAGAGGGAGGTAGCATTGCCGATGGT
CATGAGTTCGACGAATTACGCTCAGCCGTGGTGTTCAAGCGATGGTTTAA
TGTGGAGCAGCAAGAGGCAAGAGGATCACGGCATGCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig116964:23..1012-

>mRNA_H-elongata_contig116964.1324.1 ID=mRNA_H-elongata_contig116964.1324.1|Name=mRNA_H-elongata_contig116964.1324.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig116964:23..1012- (Himanthalia elongata Himel1 dioecious)
ATGGACCGAGGAGGGTACGACAGTAAGAGACACGAGAACAATATGCACGG
AATAAGCGCCAACAATGATTGCAACTCCGAGCTCGCCTCCTCCGACCCAA
CGCTGGCGCCGAAAATCCCTTTCATACAGCCCCCAACGGCCGCGCGCTTC
CGCTTCGTCCGCGGGGGCACTCCCGGCGACTCCGCGACCGTGCCAATGAC
ACGAGACGCCGTCCACGAGTCGATGATGGATATATATTTGGATCGACGGG
AGGAGCTGGGGGGTGGGGGAAGTGGGGACCTTGGCAGCCCTAAAGATATT
GGCGATTTGCTTTTTTTGGCGAGGTCAAGCCAACCGGGTTCCATCGGGCA
CGAGCTTCAGCGGCGAGGGCTTCGATTTTTCCCGAAAGAGGCGTTTGTGG
ACGCGGGGTGGGGGGAGGATCTGTCGCCATCAGCGGCGGCCGAGGAGGCC
CGATATAGTTGGGGAGCGGGGACGCCTTTGCCGCGAGAGATCCCGATGAG
TGACCTGGAACTGCTTCGGGATGAGGAGGGGAGGGTGCGACTGGTATTGT
GGGACCCTTGCGATGGACCGAGGAGGGTACGACAGTAAGAGACACGAGAA
CAATATGCACGGAATAAGCGCCAACAATGATTGCAACTCCGAGCTCGCCT
CCTCCGACCCAACGCTGGCGCCGAAAATCCCTTTCATACAGCCCCCAACG
GCCGCGCGCTTCCGCTTCGTCCGCGGGGGCACTCCCGGCGACTCCGCGAC
CGTGCCAATGACACGAGACGCCGTCCACGAGTCGATGATGGATATATATT
TGGATCGACGGGAGGAGCTGGGGGGTGGGGGAAGTGGGGACCTTGGCAGC
CCTAAAGATATTGGCGATTTGCTTTTTTTGGCGAGGTCAAGCCAACCGGG
TTCCATCGGGCACGAGCTTCAGCGGCGAGGGCTTCGATTTTTCCCGAAAG
AGGCGTTTGTGGACGCGGGGTGGGGGGAGGATCTGTCGCCATCAGCGGCG
GCCGAGGAGGCCCGATATAGTTGGGGAGCGGGGACGCCTTTGCCGCGAGA
GATCCCGATGAGTGACCTGGAACTGCTTCGGGATGAGGAGGGGAGGGTGC
GACTGGTATTGTGGGACCCTTGCGGTCCGGATCATCCGTTGATTCGAGCG
GTAGAAGGCGAACCTAGGGACGGAGCGACGGTGGAGGTGCTTAATTTCCC
CCCGCGAGGGAAGAAGCGCGGGGAAGAGGGAGGTAGCATTGCCGATGGTC
ATGAGTTCGACGAATTACGCTCAGCCGTGGTGTTCAAGCGATGGTTTAAT
GTGGAGCAGCAAGAGGCAAGAGGATCACGGCATGCTTAGGTCCGGATCAT
CCGTTGATTCGAGCGGTAGAAGGCGAACCTAGGGACGGAGCGACGGTGGA
GGTGCTTAATTTCCCCCCGCGAGGGAAGAAGCGCGGGGAAGAGGGAGGTA
GCATTGCCGATGGTCATGAGTTCGACGAATTACGCTCAGCCGTGGTGTTC
AAGCGATGGTTTAATGTGGAGCAGCAAGAGGCAAGAGGATCACGGCATGC
TTAG
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