mRNA_H-elongata_contig57718.13239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57718.13239.1
Unique NamemRNA_H-elongata_contig57718.13239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57718.13239.1 vs. uniprot
Match: D7FXM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.640e-25
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 3 
Query:  150 AISNLQRAWVKLAPSTLEGVGVFALRDIPEGVDVLRWDWQRYESVFIPEEQLRASVPQEVFDQLR 344
            AISNLQ A+V+LAPS+LEGVGVFA+RDI EGV+V+RWDW +Y SVFIP E+LR  VP+EVFDQLR
Sbjct:   18 AISNLQSAYVRLAPSSLEGVGVFAMRDIAEGVEVMRWDWHKYASVFIPGEELRERVPKEVFDQLR 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57718.13239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXM5_ECTSI2.640e-2575.38SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57718contigH-elongata_contig57718:414..2646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-28_002300.1
Exons3
Model size596
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57718.13239.1prot_H-elongata_contig57718.13239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57718 663..1994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.8478951-UTR-H-elongata_contig57718:413..6621622930936.8478951-UTR-H-elongata_contig57718:413..662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57718 414..662 -
1691679631.9334872-UTR-H-elongata_contig57718:413..6621691679631.9334872-UTR-H-elongata_contig57718:413..662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57718 414..662 -
1622930936.8926597-UTR-H-elongata_contig57718:1994..20171622930936.8926597-UTR-H-elongata_contig57718:1994..2017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57718 1995..2017 -
1691679631.9630227-UTR-H-elongata_contig57718:1994..20171691679631.9630227-UTR-H-elongata_contig57718:1994..2017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57718 1995..2017 -
1622930936.906674-UTR-H-elongata_contig57718:2571..26461622930936.906674-UTR-H-elongata_contig57718:2571..2646Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57718 2572..2646 -
1691679631.9720874-UTR-H-elongata_contig57718:2571..26461691679631.9720874-UTR-H-elongata_contig57718:2571..2646Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57718 2572..2646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.863254-CDS-H-elongata_contig57718:662..7441622930936.863254-CDS-H-elongata_contig57718:662..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57718 663..744 -
1691679631.944643-CDS-H-elongata_contig57718:662..7441691679631.944643-CDS-H-elongata_contig57718:662..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57718 663..744 -
1622930936.8781536-CDS-H-elongata_contig57718:1827..19941622930936.8781536-CDS-H-elongata_contig57718:1827..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57718 1828..1994 -
1691679631.953686-CDS-H-elongata_contig57718:1827..19941691679631.953686-CDS-H-elongata_contig57718:1827..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57718 1828..1994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57718.13239.1

>prot_H-elongata_contig57718.13239.1 ID=prot_H-elongata_contig57718.13239.1|Name=mRNA_H-elongata_contig57718.13239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MGASWSSSGVARDKESVAISNLQRAWVKLAPSTLEGVGVFALRDIPEGVD
VLRWDWQRYESVFIPEEQLRASVPQEVFDQLR*
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mRNA from alignment at H-elongata_contig57718:414..2646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57718.13239.1 ID=mRNA_H-elongata_contig57718.13239.1|Name=mRNA_H-elongata_contig57718.13239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2233bp|location=Sequence derived from alignment at H-elongata_contig57718:414..2646- (Himanthalia elongata Himel1 dioecious)
GCCGCGTTCTTGCAATTGGGAGCTGCGGGCGGAATAGAAACAGTGGAAAT
TTCTTCGGTGGAGCGCGAGTCATTCGTGAGTCATTCGCTCGCCTTCGTTG
GATTGATGATGTATGCATCGGTATGATGCGTTACCGTCGTGGCGTGTAGC
TGCTGAATTTCGACGTATTATTTGGCTTTTCTACTTAGCGAAAGTTGACA
GTCCCGGTTGGTCAAATATTAAATATTTGAACTACTGGTATTGATAGTAG
CATTAATAGGACCAGATGTAGTGCAGTAGGTGATACATTGAAACGACGCC
CAGGGTGGGGTGGGGAGGAGAAATCCCCTCCCCCATATTATATCCCATAC
AGGCCGCGCCAGCGCCGTAATCCACGCATCTGAGTGGAGAGATTTTGCCC
ATAGCCCCGTTCAAATCCGCGCTGGTACGAGTGGTACAAGGACAGCATTT
GATTTTCTCTCAACAGATTGAACCTAGACACCATCCCACCCATCCCCAGC
GGTGTTTACCTTCGTGGGGTAAACCACTTCGTCATTGAGGACGCATTACA
ATCACCAGCATTGTGCTTTCTCCTAGACGTGCCCTCGTCGCAAGCATAAC
AAACACACCATATCATATCACCAACCCAGCGAGGCGAGGCGCACTTATCG
CGATGGGAGCCTCCTGGTCCTCGAGCGGGGTTGCACGAGACAAGGAGAGT
GTGGCGATCTCGAATCTTCAACGCGCCTGGGTGAAGCTGGCACCGTCGAC
CCTCGAGGGGGTGGGAGTGTTCGCCCTGCGAGACATCCCCGAGGGCGTTG
ATGTGCTGCGGTGGGACTGGTGAGAAGAGGATCAGCCCAAAGAGGACATC
CAGTACTGCGAAAACCGTGAAACTGTGTGGTAGCTGTCTCTAAGCGCTGA
TCTCTTGTCGCAGGTTTTGTTAACCTTGATTGTTTGCCTCTGACAAAAAT
AAATGGCTGAGCAACCCGAACGAGGACTCCAAAAGTTGGAGGGAAAGCGC
AAGTATGATCGATTTAATCTAAGACAAGACATCTGAGCCTGTCGGGACAA
AACACTTGGATAATATTCCGAGGGCTCCTCTCTGGAACAAACCGAACACA
CAACCTTCTCAAGTGTATTATTCTCTGTATAAAAGCGTAGATCAATTGTG
CCGATACCCTGGGATGGTATCGTCTCCCCCAAGGGCAAAGACGATGATTC
TCTAAACCAACGAGCGGTCTCACACGAGTGCTGCAGCCCTTTATGCTTAT
TTGGGTTTTCCTTTCTCTAGAGCAGCAGGTAGGCAAACGAGCGGGGGGTG
AGGGGGTGTTTTTTCGACCGGCGCGCTAGAGCTCTGCAGTGGCAGAGTAC
TACACGCAATAATATTTGATAATATGTACTGACTGTAGCGTAATTCATCT
CGATATTCGGCGTGCGAGACGAGGGGGGGGGGGAAGGGATAGTAGAATTA
CATAGACACAGTCCAAAGGCTTGTGCGAAAACCCTGCCCGATTCTATCCA
CGCTCACCCTAGCCTGGGTTGAGAGAATGAGCAGACTGGCGCGGGACGGG
ACCGTTGAACCCTTCTCGCGAGACCAAAATCTCAGGCGCGAACGCGGACA
GGGAAAAATGTTTTCCCTTTTCAGCTGACCACGAGCAGAAGGAAACCAAA
TCCGATTGATTATTTTGCTAAAAGTGCGACTATACATATCTACGGCAACA
TCCATTTAATTCCTTCCATCGAACGGCACTCACCGCAGGCACTAGTTTAT
ACTATACGGAGCGCAGCAAAGATAGCGGGCTTTAATTGCACGCCCCCTGG
CCGGATGCTGCGATGTTCAGTAATTAAAGTATATATTTTCGATGCCGAGT
CTCACTCGCGTTGCGCACGCCTGGCTTCCTCATTCTGACGGCCTTCTTGC
AGGCAAAGATACGAGAGCGTCTTCATTCCGGAGGAGCAGCTCCGAGCGAG
CGTCCCGCAAGAGGTTTTCGATCAGCTACGGTGAGGAACGCGCCCGGCGA
ACCTCTTTATTTTTCCCACTTGAACGGTGTCTAGGGTAAATGTCAGCATA
CAATGTAACCGCGTCAACAACTCGCTGCTGTAGCAGTCGGTGCTCACTAG
CTGATTGACGGTTTCATCCCGTCCCAGCGAATGGTATATCCGAATGACGC
GGTTCGATGTGAAACCCCCTCGATCTTGCCCACCAAGATCGCAATATCAC
GCACATTTTCGAGGTTATGCACGTCTGCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig57718:414..2646-

>mRNA_H-elongata_contig57718.13239.1 ID=mRNA_H-elongata_contig57718.13239.1|Name=mRNA_H-elongata_contig57718.13239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig57718:414..2646- (Himanthalia elongata Himel1 dioecious)
ATGGGAGCCTCCTGGTCCTCGAGCGGGGTTGCACGAGACAAGGAGAGTGT
GGCGATCTCGAATCTTCAACGCGCCTGGGTGAAGCTGGCACCGTCGACCC
TCGAGGGGGTGGGAGTGTTCGCCCTGCGAGACATCCCCGAGGGCGTTGAT
GTGCTGCGGTGGGACTGATGGGAGCCTCCTGGTCCTCGAGCGGGGTTGCA
CGAGACAAGGAGAGTGTGGCGATCTCGAATCTTCAACGCGCCTGGGTGAA
GCTGGCACCGTCGACCCTCGAGGGGGTGGGAGTGTTCGCCCTGCGAGACA
TCCCCGAGGGCGTTGATGTGCTGCGGTGGGACTGGCAAAGATACGAGAGC
GTCTTCATTCCGGAGGAGCAGCTCCGAGCGAGCGTCCCGCAAGAGGTTTT
CGATCAGCTACGGTGAGCAAAGATACGAGAGCGTCTTCATTCCGGAGGAG
CAGCTCCGAGCGAGCGTCCCGCAAGAGGTTTTCGATCAGCTACGGTGA
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