prot_H-elongata_contig57687.13237.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57687.13237.1
Unique Nameprot_H-elongata_contig57687.13237.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.630e-36
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+RF+  RSWDHIQNK+VGTGHSD+TKFEWATNQHRDSIASH+GH+DLL YFAVAEN A+GRVRYQLLE
Sbjct:   36 AADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 105          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 1.660e-30
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 0
Query:    1 QAANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            QAA+RF+  R W+H+Q K+VGTGH+D+TKFEWA NQHRD++ASH+GH+D+L+YFAVAEN ++GRVRY +LE
Sbjct:    2 QAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLE 72          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A662XDD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDD1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.500e-30
Identity = 49/71 (69.01%), Postives = 64/71 (90.14%), Query Frame = 0
Query:    1 QAANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            QAA+RF+  R W+H+Q K+VGTGH+D+TKFEWA NQHRD++ASH+GH+D+L++FAVAEN AIGRVRY +LE
Sbjct:   52 QAADRFNVNRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLE 122          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A482SBV5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBV5_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 8.340e-30
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            A +R++  +S++HIQNKHVGTGHSD TKFEWA NQHRDSIAS VGH D+LSYF++A+N +IGRVRYQLLE
Sbjct:    2 ACDRYNFNKSFEHIQNKHVGTGHSDITKFEWAVNQHRDSIASFVGHADMLSYFSLAQNESIGRVRYQLLE 71          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.340e-30
Identity = 46/70 (65.71%), Postives = 64/70 (91.43%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+RF+  R W+H+Q+K+VGTGH+D++KFEWA NQHRD++ASH+GH+D+L+YFAVAEN +IGRVR+ +LE
Sbjct:    2 AADRFNINRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLE 71          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: F0YCR2_AURAN (Splicing factor subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCR2_AURAN)

HSP 1 Score: 108 bits (271), Expect = 1.180e-29
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+R +  RSWDHIQ K+VGTGHSD TKFEWA+NQHRDSIASH+GH D+++YFAVA+  +IGR RY LLE
Sbjct:    2 AADRMNINRSWDHIQAKYVGTGHSDMTKFEWASNQHRDSIASHLGHGDIMTYFAVAQGDSIGRTRYALLE 71          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.330e-29
Identity = 47/70 (67.14%), Postives = 62/70 (88.57%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+RF+  R W+H+Q K+VGTGH+D++KFEWA NQHRD++ASH+GH D+L+YFAVAEN +IGRVRY +LE
Sbjct:    2 AADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLE 71          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A3R7ANY8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ANY8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.770e-29
Identity = 46/70 (65.71%), Postives = 63/70 (90.00%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+R++  R W+H+Q K+VGTGH+D++KFEWA NQHRD+++SH+GHND+LSYFAVAEN +IGRVR+ +LE
Sbjct:    1 AADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLSSHIGHNDMLSYFAVAENESIGRVRFNMLE 70          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A024TML8_9STRA (Splicing factor subunit n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TML8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.890e-29
Identity = 45/70 (64.29%), Postives = 63/70 (90.00%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+R++  R W+H+Q K+VGTGH+D++KFEWA NQHRD++ASH+GHND+LSYFAVAEN ++GR+R+ +LE
Sbjct:    2 AADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLSYFAVAENESVGRLRFNMLE 71          
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.230e-29
Identity = 47/70 (67.14%), Postives = 63/70 (90.00%), Query Frame = 0
Query:    2 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 71
            AA+RF+  R W+H+Q K+VGTGH+D+TKFEWA NQHRD++ASH+GH+D+L+YFAVAEN ++GRVRY +LE
Sbjct:   45 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLE 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXA2_ECTSI2.630e-3684.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3G531_PHYRM1.660e-3067.61Splicing factor subunit n=20 Tax=Oomycota TaxID=47... [more]
A0A662XDD1_9STRA3.500e-3069.01Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A482SBV5_9ARCH8.340e-3072.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0XHV2_9STRA9.340e-3065.71Splicing factor subunit n=1 Tax=Aphanomyces euteic... [more]
F0YCR2_AURAN1.180e-2971.43Splicing factor subunit n=1 Tax=Aureococcus anopha... [more]
A0A1W0A9Q9_9STRA1.330e-2967.14Splicing factor subunit n=1 Tax=Thraustotheca clav... [more]
A0A3R7ANY8_9STRA1.770e-2965.71Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A024TML8_9STRA1.890e-2964.29Splicing factor subunit n=5 Tax=Saprolegniaceae Ta... [more]
A0A8J5IQX8_9STRA3.230e-2967.14Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 5..71
e-value: 2.3E-27
score: 94.9
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978FAMILY NOT NAMEDcoord: 3..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57687contigH-elongata_contig57687:2392..3654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57687.13237.1mRNA_H-elongata_contig57687.13237.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57687 2392..3654 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57687.13237.1 ID=prot_H-elongata_contig57687.13237.1|Name=mRNA_H-elongata_contig57687.13237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
QAANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDL
LSYFAVAENIAIGRVRYQLLE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009846SF3b5/RDS3-10