mRNA_H-elongata_contig57612.13231.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57612.13231.1
Unique NamemRNA_H-elongata_contig57612.13231.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: D7G182_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G182_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.370e-26
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            ALCSWRCLRERQRWFRCLD DYLILKTFLLERFLHDFVFES+SPN VR+FLG
Sbjct:  313 ALCSWRCLRERQRWFRCLDVDYLILKTFLLERFLHDFVFESMSPNTVREFLG 364
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A835ZDH9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.780e-21
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            ALCSW CLR RQR FRCLD+DYLILK FLLERFLHD VFES+SP+ VR+FLG
Sbjct:  343 ALCSWHCLRARQRLFRCLDKDYLILKCFLLERFLHDLVFESMSPDTVREFLG 394
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A835YMJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.000e-21
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            ALCSW CLR RQR FRCLD+DYLILK FLLERFLHD VFES+SP+ VR+FLG
Sbjct:  404 ALCSWHCLRARQRLFRCLDKDYLILKCFLLERFLHDLVFESMSPDTVREFLG 455
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: F0XVE8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVE8_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.830e-17
Identity = 39/51 (76.47%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFL 154
             L SWRCLR RQRWFRCLDRDYL LK FLLERFLHD VFES S     DFL
Sbjct:  348 TLWSWRCLRRRQRWFRCLDRDYLALKCFLLERFLHDAVFESASSTLFADFL 398
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A1E7FGG6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGG6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.770e-17
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            A+ SW  L++R+RW+RCLD  YL LK FLLERFLHD +FES SP+ +RDF+G
Sbjct:   18 AITSWHLLKKRKRWYRCLDPGYLSLKVFLLERFLHDILFESSSPDLLRDFVG 69
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A7S2A4Z2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4Z2_TRICV)

HSP 1 Score: 80.5 bits (197), Expect = 2.830e-17
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            A+ SWR L++R+RWFRCLD +YL LK FLLERFLHD +FES SP  +RDF+G
Sbjct:  154 AVTSWRLLQKRKRWFRCLDAEYLSLKVFLLERFLHDILFESSSPEMLRDFVG 205
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A7S2W6I0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6I0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.120e-17
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            A+ SW+ L++RQRW+RCLD  YL LK FLLERFLHD +FES SP  VRDF+G
Sbjct:  166 AITSWKLLKKRQRWYRCLDAGYLSLKVFLLERFLHDILFESSSPQLVRDFVG 217
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A7S1YZT4_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZT4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.070e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            A+ SWR L++RQRW+RCLD  YL LK FLLERFLHD +FES SPN +RDF+G
Sbjct:  610 AVTSWRLLKKRQRWYRCLDAGYLSLKVFLLERFLHDILFESSSPNILRDFVG 661
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BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A7S1FLP3_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLP3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.550e-16
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            AL SW+ L++RQRWFRCLD  YL LK FLLERFLHD +FES SP+ +RDF+G
Sbjct:  706 ALTSWKLLKKRQRWFRCLDAGYLSLKVFLLERFLHDILFESNSPDILRDFVG 757
[Close]
BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Match: A0A7S0C5R7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C5R7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.640e-16
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:    2 ALCSWRCLRERQRWFRCLDRDYLILKTFLLERFLHDFVFESVSPNNVRDFLG 157
            A  SWR L++RQRW+RCL+  YL LK FLLERFLHD +FES SP+ +RDF+G
Sbjct:  137 AATSWRLLKKRQRWYRCLEAGYLSLKVFLLERFLHDILFESSSPHILRDFVG 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57612.13231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G182_ECTSI1.370e-2692.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH9_9STRA2.780e-2180.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMJ5_9STRA4.000e-2180.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0XVE8_AURAN1.830e-1776.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1E7FGG6_9STRA2.770e-1763.46Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2A4Z2_TRICV2.830e-1767.31Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2W6I0_9STRA4.120e-1767.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1YZT4_9STRA6.070e-1769.23Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S1FLP3_9STRA1.550e-1669.23Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S0C5R7_9STRA1.640e-1665.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57612contigH-elongata_contig57612:2016..2810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.8393679-CDS-H-elongata_contig57612:2016..21271622930935.8393679-CDS-H-elongata_contig57612:2016..2127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57612 2017..2127 -
1691679631.484623-CDS-H-elongata_contig57612:2016..21271691679631.484623-CDS-H-elongata_contig57612:2016..2127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57612 2017..2127 -
1622930935.8589647-CDS-H-elongata_contig57612:2762..28101622930935.8589647-CDS-H-elongata_contig57612:2762..2810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57612 2763..2810 -
1691679631.496941-CDS-H-elongata_contig57612:2762..28101691679631.496941-CDS-H-elongata_contig57612:2762..2810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57612 2763..2810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57612.13231.1prot_H-elongata_contig57612.13231.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57612 2017..2810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57612.13231.1

>prot_H-elongata_contig57612.13231.1 ID=prot_H-elongata_contig57612.13231.1|Name=mRNA_H-elongata_contig57612.13231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
RSLQLEVSSGAPALVQVPGQRLPNPQDISARAISPRLRLRIRLSEQRSGL
LGD
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mRNA from alignment at H-elongata_contig57612:2016..2810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57612.13231.1 ID=mRNA_H-elongata_contig57612.13231.1|Name=mRNA_H-elongata_contig57612.13231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig57612:2016..2810- (Himanthalia elongata Himel1 dioecious)
CGCTCTCTGCAGCTGGAGGTGTCTTCGGGAGCGCCAGCGTTGGTTCAGGT
AAAACGTCATCGCTGGTTCAGGGCTTTCGTCCGAGCGCGTCTAAGCAGCA
AAATCGTATATTTGTAGCACTAATATGTGTATTAGTGTTAATATTTACAC
TAGTATAAGGAATACTGTTAGTTTTTGCGTTAATAAAGCGCTAACGGAAA
ATGTTGCTGTAGGTGCAAGATTGTGTGTTTCGACGTGTAACGCGAAGTGC
TTACCATTAAAGAGACTCTTGTGTATGTGGGCGCAAGTTGTTTTGATTGT
TGTATGAAGTTTGAGAGAAGATGGTGTGACGGAATTAGACACTTCTGAAG
AGGTAGGAAATCGGTGACAATTCGGGGTAATCCACCATAACGGTTCATGC
AACGGCTCTCGCGGCTCAAAAAGCATGCGTGTTTTGCTTACAATGGTGTA
TATATCGGAAAGGCACGGGGCGTGGAAGAAAAACAGCAAAGCTCCGATGT
TGCAGCGCGCGCATGTAAAAAATATCGCAAGCCGAGCGCCCATCGCTTCT
GCCGAAATCTTATAATAGGTTGCTCTAATGTCCGCAATTCAGCAGCTCCT
CCGCGGCAGTCCTTGCGTCCCGAAGCTGCGACCGGTGGCAGTGACGCTCA
TCTGTTTCTGTGTGTTATGATGCGCTTGCTTAGGTGCCTGGACAGAGACT
ACCTAATCCTCAAGACATTTCTGCTCGAGCGATTTCTCCACGACTTCGTC
TTCGAATCCGTCTCTCCGAACAACGTTCGGGACTTCTTGGGGATG
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Coding sequence (CDS) from alignment at H-elongata_contig57612:2016..2810-

>mRNA_H-elongata_contig57612.13231.1 ID=mRNA_H-elongata_contig57612.13231.1|Name=mRNA_H-elongata_contig57612.13231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig57612:2016..2810- (Himanthalia elongata Himel1 dioecious)
CGCTCTCTGCAGCTGGAGGTGTCTTCGGGAGCGCCAGCGTTGGTTCAGCG
CTCTCTGCAGCTGGAGGTGTCTTCGGGAGCGCCAGCGTTGGTTCAGGTGC
CTGGACAGAGACTACCTAATCCTCAAGACATTTCTGCTCGAGCGATTTCT
CCACGACTTCGTCTTCGAATCCGTCTCTCCGAACAACGTTCGGGACTTCT
TGGGGATGTGCCTGGACAGAGACTACCTAATCCTCAAGACATTTCTGCTC
GAGCGATTTCTCCACGACTTCGTCTTCGAATCCGTCTCTCCGAACAACGT
TCGGGACTTCTTGGGGAT
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