mRNA_H-elongata_contig11696.1323.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11696.1323.1
Unique NamemRNA_H-elongata_contig11696.1323.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.030e-26
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:  127 DPDDNVLYLVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRPRTEEIAQMEDQLAKTGGSKAAG 324
            DPD  VLYLVKWRGLPYDQ SWEHFKDIRFASDQIL FWDFCRPR EE+A++  QL+  G  K  G
Sbjct:  585 DPDSLVLYLVKWRGLPYDQCSWEHFKDIRFASDQILDFWDFCRPRPEEMAEVNAQLSAGGKGKGGG 650
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.630e-22
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:  127 DPDDNVLYLVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRPRTEEI 273
            DPD  VLYLVKWRGLPYDQ SWEHFKDIRFASDQIL FWDFCRPR E +
Sbjct:  591 DPDSLVLYLVKWRGLPYDQCSWEHFKDIRFASDQILDFWDFCRPRPEGV 639
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A448Z3J7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3J7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.030e-9
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   88 KRGIGGIVAEESDDPDDNVLYLVKWRGLPYDQSSWEHFKDIRF-ASDQILGFWDFCRPRTEEIAQMEDQ 291
            K G+  I+ E   DP+DNV Y+VKW+GLP+ + +WE++KDI+  A+D+   FW   +P  EE      Q
Sbjct:  635 KEGLKEILTEIPWDPEDNVRYVVKWKGLPFAEITWEYWKDIKTDATDEAEDFWIRQQPPDEETLARNSQ 703
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A7S4QWE4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QWE4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.900e-7
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  115 EESDDPDDNVLYLVKWRGLPYDQSSWEHFKDIRFAS-DQILGFWDFCR-PRTEEIAQMEDQL 294
            EE+ DP+DNV Y++KW+GL + + +WE++KDI+    DQ+  FW   R P T E+  + +++
Sbjct:  554 EEAWDPEDNVRYVIKWKGLQFQEMTWEYWKDIKHDFVDQVEDFWLRQRAPNTNEVTMILERV 615
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A1Z5JDN6_FISSO (Chromodomain-helicase-DNA-binding protein 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDN6_FISSO)

HSP 1 Score: 53.1 bits (126), Expect = 9.020e-6
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  127 DPDDNVLYLVKWRGLPYDQSSWEHFKDI-RFASDQILGFWDFCRP 258
            DP+DNV Y+VKW+G+P+ + +WE+++DI R A D+   FW   +P
Sbjct:  486 DPEDNVRYVVKWKGMPFTEMTWEYWRDIKRDAVDEAEDFWYRQKP 530
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A4D9D793_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D793_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.220e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  136 DNVLYLVKWRGLPYDQSSWEHFKDIR-FASDQILGFWDFCRP 258
            D V YLVKWRGLPY ++SWE + DI+ FA +++  FW   RP
Sbjct:  741 DRVRYLVKWRGLPYAEASWEKWADIKDFAYEEVGLFWVLQRP 782
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A482SLZ8_9ARCH (Chromo domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLZ8_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.710e-5
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  112 AEESDDPDDNVLYLVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRP 258
            AEE+D P+  V YLVKWRGL YD+ +WE +++++    ++  FW   RP
Sbjct:   83 AEEAD-PESEVRYLVKWRGLSYDECTWERWEELKDWYSEVWLFWRTQRP 130
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BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A7R9W015_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W015_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.260e-5
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  127 DPDDNVLYLVKWRGLPYDQSSWEHFKDIRFAS-DQILGFW 243
            DP+D V Y+VKW+GLPY + +WE++KDI+    DQ   FW
Sbjct:  296 DPEDYVRYVVKWKGLPYAEITWEYWKDIKHDFVDQAEDFW 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LDU9_ECTSI5.030e-2674.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE5.630e-2285.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A448Z3J7_9STRA7.030e-942.03Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4QWE4_9STRA2.900e-740.32Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JDN6_FISSO9.020e-646.67Chromodomain-helicase-DNA-binding protein 6 n=2 Ta... [more]
A0A4D9D793_9STRA1.220e-554.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A482SLZ8_9ARCH1.710e-544.90Chromo domain-containing protein n=1 Tax=archaeon ... [more]
A0A7R9W015_9STRA5.260e-552.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11696contigH-elongata_contig11696:6850..8614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.9e-22
Seed eggNOG ortholog2880.D8LDU9
KEGG koko:K14436,ko:K14437
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0384@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11696.1323.1prot_H-elongata_contig11696.1323.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11696 6850..8613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.0503135-CDS-H-elongata_contig11696:6849..69281622929680.0503135-CDS-H-elongata_contig11696:6849..6928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11696 6850..6928 +
1691679116.9627526-CDS-H-elongata_contig11696:6849..69281691679116.9627526-CDS-H-elongata_contig11696:6849..6928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11696 6850..6928 +
1622929680.0856225-CDS-H-elongata_contig11696:7699..78871622929680.0856225-CDS-H-elongata_contig11696:7699..7887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11696 7700..7887 +
1691679116.9736567-CDS-H-elongata_contig11696:7699..78871691679116.9736567-CDS-H-elongata_contig11696:7699..7887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11696 7700..7887 +
1622929680.1034636-CDS-H-elongata_contig11696:8550..86131622929680.1034636-CDS-H-elongata_contig11696:8550..8613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11696 8551..8613 +
1691679116.9831655-CDS-H-elongata_contig11696:8550..86131691679116.9831655-CDS-H-elongata_contig11696:8550..8613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11696 8551..8613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11696.1323.1

>prot_H-elongata_contig11696.1323.1 ID=prot_H-elongata_contig11696.1323.1|Name=mRNA_H-elongata_contig11696.1323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
GQDGGNNVNKQLKSYRRETAKGVGDPGTGKRGIGGIVAEESDDPDDNVLY
LVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRPRTEEIAQMEDQLAK
TGGSKAAGRG
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mRNA from alignment at H-elongata_contig11696:6850..8614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11696.1323.1 ID=mRNA_H-elongata_contig11696.1323.1|Name=mRNA_H-elongata_contig11696.1323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1765bp|location=Sequence derived from alignment at H-elongata_contig11696:6850..8614+ (Himanthalia elongata Himel1 dioecious)
GGTCAAGATGGAGGGAACAACGTTAACAAGCAGCTGAAGTCTTATCGACG
GGAGACCGCTAAGGGCGTTGGAGATCCAGGTGGAAAAATATCTTCAACGG
GGGGCTATGCAAAACGGTTCTGAAAATGCACGATTCGGCTATGAAGTCGT
GCGATATCGTTCAACTGACTGCGATTCGGATACTGTGACCATGATGATAA
TATGGTTGTTACAGTTATACGGATGATTGATACGATACGTCTATTAGCAC
CATACGGGAGACATGGGTGCACGCATTGTGAAAAGACGCTGTGGTTACGA
ACCCTACGCTGTGACATCGAGCCAAAGTACTCTATTAAAAGTTAAAGATC
CAGACTACCATTTCTTTAACACGTGTGGTCATTCACTGTTTTTCTATTTG
TCAAGTCACTGTCTTCTTATACGTGTGATAAGTCATTCTTTATTTCTATG
TATTTATCTCTTTATCATACGTGTGATAAGTCATTCTTTATTTCTATGTA
TTTATGTATCTCTATTATACGTATGTTTCAGCCACTTACCTCTGCGATTC
ATGTAGTCGTTCATTATCTATACCATACGCTGAGTCAGCCACATTATCTC
TCTATCTGCTATATATAACTCAAATGGTACTAAATAGCTGCCGTGGCAAC
GGCAGTTGGGGCAGCAGCAGCAGCAGCAGCACACGCGTCGCCAGCGCCAA
ATCGATACGGTAACTCTCTTATGACCTGCAGTATAACACATTATACGGTA
TACGGTATATTTCTGTCGAAAGTAATATAACAGTGCAGCCTTGACCTTAT
TGCCCCGCTTGAATGTGGAAAACAAACGGGAAAACGTTATTCGGCACCAG
GGACGGGGAAGCGAGGCATCGGCGGTATCGTGGCGGAAGAAAGCGACGAC
CCGGACGACAACGTGCTCTACCTCGTCAAGTGGCGAGGCCTCCCCTACGA
TCAATCGTCCTGGGAGCACTTCAAGGACATCCGTTTCGCCTCCGACCAGA
TCTTGGGTTTTTGGGACTTCTGCAGACCGAGGACCGAGGTGACGGAGGAG
GGATAGAGTAGCTCCGTCGATACCGGTACAAGAGTAGCTCCATCGATACC
AGTACATTTTTAGCCCCATCGATATCGATATAATAATTAGTGGTCTACGG
ATGATGTCGTCGTAAACCACGGCTGCCTCGATTTCATGTCTATCGCGTGA
ATCTATAACGCGGCTTGTTGTTACACCTATCGTTTGCGCTACTTGCTATT
GCGAGACTTGATCACGTTTCAGCATATTTCAGTACACAGTTTGGCTGTGA
TTGAACCGCCCTTGTGCCCGTATTAGTGCCGCGATGTCCGCTGGACTCCG
CGCACGATACGCTTAGCATCACTTTACCCTTTACACTAATAAATGTTACG
AGACGCTTATGTAGTGATGTTTTCCGGGAGACGGGAACACTGACTTATTT
GCCTGTAAACGCCGACATACGTCTCACTAGAACACCCGGGGGGGGCTCTT
TCTTTATTCCATTTTTGTTGTTGTGAGGGGGCGGCGGTACTGTGTACCCC
ACGAAGACAGAGAAACGCCTCCACCCCTCATTCCAACCGGTGAGCAAAGC
AGCCACTCTTAGTTATAACAGTATTGCATACTGTATAGTCGATAATATAT
ATATATTAACAGAACTGCTGTATACCATGATGCATGGTGTGTATGGTGCA
GGAAATAGCGCAGATGGAAGATCAGCTGGCCAAGACAGGGGGTTCGAAGG
CGGCCGGCCGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig11696:6850..8614+

>mRNA_H-elongata_contig11696.1323.1 ID=mRNA_H-elongata_contig11696.1323.1|Name=mRNA_H-elongata_contig11696.1323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig11696:6850..8614+ (Himanthalia elongata Himel1 dioecious)
GGTCAAGATGGAGGGAACAACGTTAACAAGCAGCTGAAGTCTTATCGACG
GGAGACCGCTAAGGGCGTTGGAGATCCAGGGTCAAGATGGAGGGAACAAC
GTTAACAAGCAGCTGAAGTCTTATCGACGGGAGACCGCTAAGGGCGTTGG
AGATCCAGGGACGGGGAAGCGAGGCATCGGCGGTATCGTGGCGGAAGAAA
GCGACGACCCGGACGACAACGTGCTCTACCTCGTCAAGTGGCGAGGCCTC
CCCTACGATCAATCGTCCTGGGAGCACTTCAAGGACATCCGTTTCGCCTC
CGACCAGATCTTGGGTTTTTGGGACTTCTGCAGACCGAGGACCGAGGGAC
GGGGAAGCGAGGCATCGGCGGTATCGTGGCGGAAGAAAGCGACGACCCGG
ACGACAACGTGCTCTACCTCGTCAAGTGGCGAGGCCTCCCCTACGATCAA
TCGTCCTGGGAGCACTTCAAGGACATCCGTTTCGCCTCCGACCAGATCTT
GGGTTTTTGGGACTTCTGCAGACCGAGGACCGAGGAAATAGCGCAGATGG
AAGATCAGCTGGCCAAGACAGGGGGTTCGAAGGCGGCCGGCCGCGGAGAA
ATAGCGCAGATGGAAGATCAGCTGGCCAAGACAGGGGGTTCGAAGGCGGC
CGGCCGCGGA
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