mRNA_H-elongata_contig5758.13228.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5758.13228.1
Unique NamemRNA_H-elongata_contig5758.13228.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: D8LMQ7_ECTSI (PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECTSI)

HSP 1 Score: 632 bits (1631), Expect = 1.160e-223
Identity = 354/454 (77.97%), Postives = 388/454 (85.46%), Query Frame = 1
Query:   85 YYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVVR 1446
            Y NMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDIT +EV+ +ELK +AKDREMELMEDNH RVEVRVYVQKVKHL+YEHQN+LKSI  DGE LL  E DLH  RSS L R+KKD+ SEV++R++LNA+EI Q+KKAH KTLTKMRE FE                LE DL LRRKVDIHEIEERKN HINDLM NHEKAFGQM  YYNDIT+DNLKLIRSLKDELVEMKKK+VANQKLM DIS ENKRLSEPLT AL DVAELHAHL+ QEKDRMSLTNAKARLRVIDEQLSEVRDSH++LE DFA VVE+RDQLYDTFEGAVRAIQQKSDFR NLALEQR+ +VE+S+++A  QLTQIV AAKLDP +++RVM+GLE+VL AKN  + DLQYAFVRTAK YNDSLRTY+AKLKA GVPA +I  MGFAP  TST LGPAGLVVR
Sbjct:   28 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITHQEVKTMELKTSAKDREMELMEDNH-RVEVRVYVQKVKHLEYEHQNNLKSITMDGEQLLGGEGDLHGNRSSELHRAKKDIKSEVEERYLLNAEEIAQVKKAHGKTLTKMREGFEVSLSELRARCDARLASLEDDLELRRKVDIHEIEERKNLHINDLMKNHEKAFGQMKAYYNDITNDNLKLIRSLKDELVEMKKKAVANQKLMLDISHENKRLSEPLTVALTDVAELHAHLRGQEKDRMSLTNAKARLRVIDEQLSEVRDSHKELEVDFARVVEERDQLYDTFEGAVRAIQQKSDFR-NLALEQRMSSVEESIERAGVQLTQIVTAAKLDPPEVDRVMTGLEEVLTAKNGAISDLQYAFVRTAKGYNDSLRTYTAKLKACGVPAEDIASMGFAPYTTSTSLGPAGLVVR 479          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: F0XWV6_AURAN (GAS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWV6_AURAN)

HSP 1 Score: 473 bits (1218), Expect = 6.340e-161
Identity = 272/469 (58.00%), Postives = 344/469 (73.35%), Query Frame = 1
Query:   61 EGPQEESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQ-------MNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVVR 1446
            E  QEE+EY +MDLEMLQEVVPMLKQQL K  LDRNYVQLERDTIQ FYDIT+ EV+ +E +IAAKDREMELMEDNH RVEVRVY+QKVKHL+YEH N+L++IA +GEH +  E + H  R+  L ++KK L  E+ +R   NA+EI Q+K+ H K L KMRE FE               QL  DL LRRKV +HEIEERKN HINDLM NHEKA G+        N+YYNDIT+DNLKLI+SLKDE+ EMKKK+VANQKLM DISQEN RL EPLT A+A+VAEL A LKD++KDR+SL N++ARL+V+++QL ++ +SH  L+  +A V + RD+LY+TFE ++  IQQKSDF  N+ LEQ++  ++ S++ A  Q+ QI+ AA LD  ++  V + LE+ LA +N  +RD +Y  +R  K YNDSLRTY+ KL   G+PA EID MGF+ + TS   GPAGLVV+
Sbjct:   19 EKEQEETEYDSMDLEMLQEVVPMLKQQLAKCTLDRNYVQLERDTIQMFYDITKGEVQDIERQIAAKDREMELMEDNH-RVEVRVYLQKVKHLEYEHNNNLRNIAVEGEHFMTEEHENHDNRAYELKKTKKSLKLELAEREWSNAEEIKQVKQQHAKNLLKMREGFEGQLGELSDRCGKRLEQLAADLELRRKVHVHEIEERKNLHINDLMRNHEKALGRAGNIQNDFNSYYNDITNDNLKLIKSLKDEVAEMKKKAVANQKLMHDISQENMRLKEPLTVAVAEVAELRAQLKDRQKDRLSLRNSRARLQVLEQQLRDLVESHEALKLGYAAVEKARDELYNTFEASIGQIQQKSDFA-NVMLEQKLSTMQHSVENAAEQVAQIISAAGLDAAEMEGVGASLENTLAGRNQSIRDTRYELIRMTKVYNDSLRTYTQKLIELGIPANEIDSMGFSAIPTSASSGPAGLVVK 485          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A835YLL1_9STRA (Growth-arrest-specific micro-tubule binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL1_9STRA)

HSP 1 Score: 463 bits (1192), Expect = 4.930e-157
Identity = 273/457 (59.74%), Postives = 352/457 (77.02%), Query Frame = 1
Query:   73 EESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVV 1443
            EE+EY NMDLEML EVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDI++RE   L + IAAKDREMELMEDNH RVEVRVY+QKVKHL+YEH+N+L+++  +G  LL +E+  H +R + L  +K DL   + +R +LNA+EI Q+K AH+K LTKMRE F+   XXXXXXXXXXXX         RKVD+HEIEERKN HINDL+ NHE AFGQM TYYNDIT+DNL+LIRSLKDELVEMKKK+VANQ+LM DI +ENKRL+EPL  A+A+V +L A L+DQEKDR+SL NA+ARLR  +++L E+ +++ + + +F     +RD+LY++FEGAVR +QQ+SDFR NL LE+++ A+E  ++++  +L +   AA L P+D+ RV   L+  LAA+  GV DL+   +R +K Y+D+LRT + +L+A+GVP  E   +GFAP A +T  GPAGLVV
Sbjct:   23 EETEYDNMDLEMLHEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDISRREARDLGMNIAAKDREMELMEDNH-RVEVRVYMQKVKHLEYEHRNNLRAVEAEGASLLGDESAQHGERDADLKCAKHDLKRSLAERELLNAEEISQVKAAHLKNLTKMREGFDGSLXXXXXXXXXXXXXXXXXXXXXRKVDVHEIEERKNLHINDLIRNHESAFGQMKTYYNDITNDNLRLIRSLKDELVEMKKKAVANQRLMADIGEENKRLTEPLLAAVAEVGDLRARLRDQEKDRLSLANARARLRKYEQELEELGEAYAEAQREFEATEGERDELYESFEGAVRGVQQRSDFR-NLMLERKVSALEAGIERSGARLGEAAAAAGLAPDDVARVAGALDAALAARARGVGDLRAELLRASKAYDDALRTCARRLEAAGVPRGEAAALGFAPAACATATGPAGLVV 477          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A6V1SRB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SRB9_HETAK)

HSP 1 Score: 434 bits (1117), Expect = 1.010e-145
Identity = 264/456 (57.89%), Postives = 340/456 (74.56%), Query Frame = 1
Query:   79 SEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVVR 1446
            +EY NM+L+ML+EVVPML+QQLEK+MLDRNYVQLERDT QTFYD+T++EV  L+L+IAAK+REMELMEDNH RVE+RVYVQKVKHL+YEH+N+LK I ++G  LL  E + H      + R KK++  E+ ++ + NA  ++  ++ + K L KMRE F  XXXXXXXXXXXXXX    DL L+RKV +HEIEERKN HINDLM NHEKAF QM  YYNDIT+DNLKLI+SLKDE+ E K K+VANQKLM DISQENK LSEPL  A+A VA L   LKD+ KD +SL +A+AR   +  +L  + + H  L+   A+   +RD L++ FE +VRA+QQKSDFR NL LE R+ A+ + ++KA  QL ++VEAA LD E++  +M  L++++AAK A V+DLQY+ +R +K YND+LRTY+ K+   G+P  EID MGF P  T T  GPAGLVV+
Sbjct:   27 TEYNNMELDMLKEVVPMLRQQLEKAMLDRNYVQLERDTTQTFYDLTKKEVYDLDLQIAAKEREMELMEDNH-RVEIRVYVQKVKHLEYEHKNNLKHINQEGGGLLSEEQEQHDTNELEIKREKKEMKLELVEQDLQNAAAVLLERETNEKNLRKMREGFXXXXXXXXXXXXXXXXXXXADLELQRKVTVHEIEERKNLHINDLMKNHEKAFSQMKKYYNDITNDNLKLIKSLKDEVQESKNKAVANQKLMYDISQENKELSEPLAAAVAAVAGLRGQLKDRAKDELSLRHARARSAALAGRLRTLAEEHARLKETCASAEHERDDLHEGFEASVRAVQQKSDFR-NLLLESRLQAMGEGLEKASAQLQEVVEAANLDREEVAHLMGSLDEMVAAKGAVVKDLQYSVLRCSKGYNDALRTYTEKMLKIGIPQEEIDAMGFGPAQTITTEGPAGLVVK 480          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A2D4CD87_PYTIN (Sporangia Induced Dynein Regulatory Complex Protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CD87_PYTIN)

HSP 1 Score: 390 bits (1003), Expect = 1.580e-128
Identity = 259/480 (53.96%), Postives = 331/480 (68.96%), Query Frame = 1
Query:    1 MGAKKKGRKXXXXXXXXXKEEGPQEESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLV 1440
            MG KKKG KXXXXXXXXX     +E SEY  MD+ ML+EV+ ML+QQLEK+ +DRNYVQ ERD I++FYDIT++E+  +E ++ AKDREME+MEDNH RVEVRVYVQKVKHL+YEH+N+LK ++ DG   L  E DLH+ R + L  +K+ L  E+K+R + N DEI                    XXXXXXXXXXXXXX          KVDIHEIEERKN HINDLM NHEKAF Q+  YYNDIT DNL+LI SLK+E+  MKKK+ AN KLM D+SQENKRLSEPL  AL +V  L   LKD++KD++SL NAKARL  + +Q+SE++D   +L A +  +  DRD LYDTFE  V  I +K + + NL LEQR+  ++    + E QL +++ AA L+P    RV+  L+ VL  KNA VR+LQY+  + +KT+ND LRT++ KL   G+P  EI  +GF+PVA +  + PAGLV
Sbjct:    1 MGPKKKGGKXXXXXXXXXX--XXEEPSEYDTMDVPMLKEVIQMLRQQLEKAQVDRNYVQHERDMIESFYDITKQEIADVENQVMAKDREMEIMEDNH-RVEVRVYVQKVKHLEYEHKNNLKRVSADGVGHLDEERDLHQHRETVLRSTKQSLKLELKERELSNEDEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVDIHEIEERKNLHINDLMKNHEKAFTQIKNYYNDITKDNLRLIDSLKNEIAAMKKKAAANAKLMHDVSQENKRLSEPLAAALQEVEHLRHELKDEQKDKLSLRNAKARLLYLAQQVSELKDKQTELRAQYKALENDRDLLYDTFEQTVATIHKKGECK-NLILEQRLATMDDQHSRKEMQLQELLAAANLEPSAARRVLESLDQVLETKNAHVRELQYSVAKASKTFNDMLRTFTEKLTQFGIPEDEIRALGFSPVAANPNVNPAGLV 476          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A0P1A516_PLAHL (Sporangia induced dynein regulatory complex protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A516_PLAHL)

HSP 1 Score: 375 bits (962), Expect = 2.360e-122
Identity = 228/458 (49.78%), Postives = 299/458 (65.28%), Query Frame = 1
Query:   67 PQEESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLV 1440
            P+E SEY  MD+ ML+E + MLKQQL K+ +DRNYVQ ERD I++FYDIT++E++  E +I  KDREME+MEDNH RVEVRVY QKVKHLDYEH+++LK +  DG + +  E DLH  R   L   K+ L  E K+R + N DEI QM +AH K           X              L+  L LR KVD HEIEERKN HINDLM NHEKAF Q+  YYNDIT DNL+LI SLK+E+  MKKK+ AN KLM D+SQENKRLSEPL  A+ +V  L   LKD++KD++SL NAKARL  +  QL +++ +   LE +++ +    D LYDTFE  V+ + +KS+ + NL LEQR+ A++    +   QL +I+ AA LDP   +RV   L  +L +KNA +R LQY  V+ +K YND+LRT++ KL   G+   EI  +GF     ++ + PAGLV
Sbjct:   21 PEESSEYDMMDVSMLKEAIQMLKQQLGKAQVDRNYVQHERDMIESFYDITKQEIQDYENQIMEKDREMEIMEDNH-RVEVRVYAQKVKHLDYEHKHNLKRVQIDGSNHMDEERDLHEHREVVLRDKKQSLKLERKERDLSNEDEIEQMNQAHEKXXXXXXXXXXXXNAALEGRCQQRLQSLQESLELRCKVDTHEIEERKNMHINDLMKNHEKAFKQIKNYYNDITKDNLRLIDSLKNEIATMKKKAAANSKLMLDVSQENKRLSEPLAAAIKEVEHLRHELKDEQKDKLSLRNAKARLIQLTRQLHDLKQNQVKLENEYSAMKTQYDALYDTFEDTVQTVHKKSECK-NLILEQRLAAMDGQHSRKGAQLQEILLAANLDPMQAHRVTETLSTLLRSKNAKIRSLQYNVVKESKAYNDTLRTFTQKLTQFGISDEEIRELGFKFHTANSNVTPAGLV 476          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A5D6XML6_9STRA (GAS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XML6_9STRA)

HSP 1 Score: 374 bits (961), Expect = 3.560e-122
Identity = 226/457 (49.45%), Postives = 300/457 (65.65%), Query Frame = 1
Query:   73 EESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAK-LDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLV 1440
            E SEY  MD+ ML+EV+ ML+QQLEK+ +DRNYVQ ERDTI++FY+IT+ E+   E +I AKDREME+MEDNH RVEVRVYVQKVKHL+YEH N+ + +  D    +  E DLH  R S L  +K+ L  E K+R + N DE  QM +AH K L K+RE+F                +L   L LR KVD+HEIEERK+ H+NDLM NHEKAF Q+  YYNDIT DNL+LI SL+ EL  MKKK+ AN KLM D++QEN+RLSEPL  AL +V  L   LKD+ KD++SL NAKARLR + +Q+     +   L+  +  +  DR+ LYD FE AV+ + +K + + NL LEQR+ A++    + E QL ++V AA  L+P    RV   L+ +L  KNA +  LQY+  + +K +ND+LRT++  L   GVP   +  +GFA + T+T   PAGLV
Sbjct:   24 EPSEYDTMDVPMLREVIQMLRQQLEKAQVDRNYVQHERDTIESFYEITKAELADHENEIMAKDREMEIMEDNH-RVEVRVYVQKVKHLEYEHANNRRRVLGDATGRVDEERDLHEHRESVLRSTKQSLRLERKERELSNEDETEQMTQAHEKNLLKLREQFAATNAALEARCRQRLRELHESLALRCKVDVHEIEERKHLHLNDLMQNHEKAFAQLKNYYNDITKDNLRLIESLQAELAAMKKKAAANAKLMHDVAQENRRLSEPLAAALQEVEHLRHELKDERKDQLSLRNAKARLRHLAQQVQATTAAQAALKTRYKALESDRNALYDAFEHAVQTVHKKGECK-NLILEQRLAAMDDQHARKELQLREVVAAAAGLEPAHARRVTDTLDALLRDKNARLLALQYSVAKASKAFNDTLRTFTDTLARFGVPDDHVRALGFAALPTNTNANPAGLV 478          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A8J2SEB4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEB4_9STRA)

HSP 1 Score: 365 bits (937), Expect = 1.100e-118
Identity = 219/460 (47.61%), Postives = 305/460 (66.30%), Query Frame = 1
Query:   67 PQEESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVVR 1446
            P E +EY  MDLEML+EVVP+LKQ L K  LDRNYVQLERD +Q FYDI++ EVE ++ +IA KDR+MELME+NH RVE+RVY+QKV+HL+YEH+++L+ + ED +H    E + H QR+  L ++K  + +E+ +R I NA+E+ ++++            FE               QLE DL +RRKV IHEIEERKN HINDL+ NH+KAFGQM  YYN ITSDNLKLI SLK E+ +M++K+  N+   +D+S EN +L EPLT A+A+VA L A L      ++SL N++ R++V++++L ++  SH  L+ +    + +RD L   FE  V+  +Q+++   N+ LEQ++  + Q++D A  Q  QIV AA LD E L R  + LE  LA KN  +RD +Y  VR  K YND+LRTYS KL   G+P+ EID MGF  + + +  GPAGLVV+
Sbjct:   15 PDEVNEYETMDLEMLREVVPLLKQTLAKKSLDRNYVQLERDALQQFYDISRSEVEDVKGEIAKKDRDMELMEENH-RVELRVYLQKVRHLEYEHRHALRGVGEDTKHFDTEEKEAHEQRTHALKKAKTSIRTELGEREISNAEEVRELREQXXXXXXXXXLEFEEEIVELGSKCQKRLEQLETDLKMRRKVHIHEIEERKNLHINDLIRNHDKAFGQMKQYYNTITSDNLKLITSLKTEVKDMREKAQQNKVTTKDVSAENAKLREPLTVAVAEVAALRARLXXXXXXKLSLRNSRNRMKVLEDRLKKLERSHAALKDEAHATIIERDGLRAAFEQTVQQARQRANVG-NVLLEQKVTTMRQAVDNAAAQTAQIVTAAGLDAEALGRAHAELEGDLARKNELLRDAKYDRVRAQKAYNDALRTYSQKLVDLGIPSQEIDAMGFTLLPSQSTSGPAGLVVQ 472          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A067CHZ1_SAPPC (GAS domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHZ1_SAPPC)

HSP 1 Score: 358 bits (918), Expect = 8.690e-116
Identity = 227/459 (49.46%), Postives = 303/459 (66.01%), Query Frame = 1
Query:   70 QEESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVVR 1446
            +E SEY  MD+EML+EV  ML+QQL+KS +DRNYVQ ERDTIQ+FYDIT+REVE  +++I AKDREME+MEDNH RVEVRVY+QKVKHL+YEH+N+LK +  DG   +  E D+H  R   L  +K+ L  E+K+R + N DEI                    XXXXXXXXXXXXXX                       HINDLM NHE+AF QM  YYNDIT DNL+LI SLK E+ EMKKK+ AN KLM DIS ENKRLSEPL  A+ +V  L   LKD++KD++SL NAKARL ++ +Q  +++  H++L   +  +   R+ LYD+FE  +  +Q K +++ NL LEQR+ +  +  +K + QL +I++AA L+  ++ RV   L+ +L+ KNA VRDLQY   + +K YND+LRTY  K+   G+P  +I  +GF P+ T+T +GPAGLV +
Sbjct:   19 EEPSEYDTMDVEMLKEVTQMLRQQLDKSQVDRNYVQHERDTIQSFYDITKREVETHDMEIMAKDREMEMMEDNH-RVEVRVYIQKVKHLEYEHKNNLKRVKTDGGSHIDEEKDMHVHREHKLKGAKQALKLELKERELSNEDEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINDLMKNHERAFTQMKNYYNDITKDNLRLIESLKKEIAEMKKKAAANTKLMHDISHENKRLSEPLAAAIQEVERLKHELKDEQKDKLSLRNAKARLVLLGKQRVQLKKEHQELLHAYKTLEAGRNALYDSFEHTIHTVQTKGEYK-NLVLEQRLSSFSEQHNKKQAQLDEILQAAHLEAGEVRRVTEKLDTMLSTKNAKVRDLQYQVAKASKAYNDALRTYEGKMSDLGIPDEDIRTLGFNPLLTTTSVGPAGLVAK 475          
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Match: A0A024USX7_9STRA (GAS domain-containing protein n=13 Tax=Aphanomyces TaxID=100860 RepID=A0A024USX7_9STRA)

HSP 1 Score: 348 bits (892), Expect = 7.240e-112
Identity = 223/460 (48.48%), Postives = 300/460 (65.22%), Query Frame = 1
Query:   67 PQEESEYYNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRVEVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKKDLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETXXXXXXXXXXXXXXQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSDNLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAELHAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRDQLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAAKLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKLKASGVPAAEIDGMGFAPVATSTFLGPAGLVVR 1446
            P+E SEY  MD+EML+EV  ML+QQL+KS +DRNYVQ ERDTIQ+FYDIT+REVE  +++I  KDREME+MEDNH RVEVRVY+QKVKHL+YEH+N+LK +  DG   +  E D+H  R   L  +K+ L  E+K+R + N D                      XXXXXXXXXXXXXX                         NDLM NHE+AF QM  YYNDIT DNL+LI SLK E+ +MKKK+ AN KLM DIS ENKRLSEPL  A+ +V  L   LKD++KDR+SL NAKARL ++++QL ++R  H+ L   +  +   R+ LYD+FE  + ++Q K +++ NL LEQR+ A  +  +K + QL +I+ AA L+  ++ RV   L+ +L  KN  +RDLQY   + +K YND+LRTY +K++  G+P  +I  +GF P+ T+T +GPAGL+ +
Sbjct:   19 PEEPSEYDTMDVEMLKEVTQMLRQQLDKSQIDRNYVQHERDTIQSFYDITRREVETHDMEIMGKDREMEMMEDNH-RVEVRVYIQKVKHLEYEHKNNLKRVKADGLSHIDEEGDMHVHREHKLKGAKQSLKLELKERELSNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDLMKNHERAFTQMKNYYNDITKDNLRLIDSLKREISDMKKKATANAKLMHDISHENKRLSEPLAAAVQEVERLKHGLKDEQKDRLSLRNAKARLVLLEKQLVDLRKKHQSLTQAYKTMEASRNALYDSFEHTIHSVQTKCEYK-NLVLEQRLSAYGEQHNKKQAQLDEILMAAHLESGEVARVTEKLDTLLTTKNTKIRDLQYQVAKASKAYNDALRTYESKMRDFGLPDEDIRTLGFTPLLTATSVGPAGLLTK 476          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5758.13228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ7_ECTSI1.160e-22377.97PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECT... [more]
F0XWV6_AURAN6.340e-16158.00GAS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A835YLL1_9STRA4.930e-15759.74Growth-arrest-specific micro-tubule binding-domain... [more]
A0A6V1SRB9_HETAK1.010e-14557.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4CD87_PYTIN1.580e-12853.96Sporangia Induced Dynein Regulatory Complex Protei... [more]
A0A0P1A516_PLAHL2.360e-12249.78Sporangia induced dynein regulatory complex protei... [more]
A0A5D6XML6_9STRA3.560e-12249.45GAS domain-containing protein n=1 Tax=Pythium bras... [more]
A0A8J2SEB4_9STRA1.100e-11847.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067CHZ1_SAPPC8.690e-11649.46GAS domain-containing protein n=3 Tax=Saprolegniac... [more]
A0A024USX7_9STRA7.240e-11248.48GAS domain-containing protein n=13 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5758contigH-elongata_contig5758:1820..9014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score644.0
Seed ortholog evalue5.4e-182
Seed eggNOG ortholog2880.D8LMQ7
Preferred nameGAS8
KEGG koko:K14474,ko:K19942
KEGG Pathwayko05143,map05143
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003351,GO:0003355,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005815,GO:0005856,GO:0005874,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0017016,GO:0017137,GO:0019899,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031267,GO:0031514,GO:0032474,GO:0032475,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0033036,GO:0034613,GO:0034622,GO:0035082,GO:0035889,GO:0036064,GO:0036126,GO:0040011,GO:0042127,GO:0042471,GO:0042472,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043583,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045880,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048731,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051020,GO:0051098,GO:0051179,GO:0051641,GO:0051674,GO:0055001,GO:0060271,GO:0060285,GO:0060294,GO:0060322,GO:0060341,GO:0061061,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0090596,GO:0097014,GO:0097223,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903564,GO:1903566,GO:1903827,GO:1903829,GO:1904526
EggNOG free text desc.positive regulation of protein localization to cilium
EggNOG OGs2BXFH@1,2QQDA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGrowth arrest-specific protein 8
Ec32 orthologEc-02_003300.1
Exons12
Model size1449
Cds size1449
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5758.13228.1prot_H-elongata_contig5758.13228.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5758 1820..9014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.11271-CDS-H-elongata_contig5758:1819..20651622930935.11271-CDS-H-elongata_contig5758:1819..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 1820..2065 -
1691679631.2547274-CDS-H-elongata_contig5758:1819..20651691679631.2547274-CDS-H-elongata_contig5758:1819..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 1820..2065 -
1622930935.1294646-CDS-H-elongata_contig5758:2309..24001622930935.1294646-CDS-H-elongata_contig5758:2309..2400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 2310..2400 -
1691679631.2760153-CDS-H-elongata_contig5758:2309..24001691679631.2760153-CDS-H-elongata_contig5758:2309..2400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 2310..2400 -
1622930935.1478117-CDS-H-elongata_contig5758:2648..27791622930935.1478117-CDS-H-elongata_contig5758:2648..2779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 2649..2779 -
1691679631.2843413-CDS-H-elongata_contig5758:2648..27791691679631.2843413-CDS-H-elongata_contig5758:2648..2779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 2649..2779 -
1622930935.168079-CDS-H-elongata_contig5758:3106..32441622930935.168079-CDS-H-elongata_contig5758:3106..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 3107..3244 -
1691679631.292657-CDS-H-elongata_contig5758:3106..32441691679631.292657-CDS-H-elongata_contig5758:3106..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 3107..3244 -
1622930935.1915362-CDS-H-elongata_contig5758:4050..41341622930935.1915362-CDS-H-elongata_contig5758:4050..4134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 4051..4134 -
1691679631.3048635-CDS-H-elongata_contig5758:4050..41341691679631.3048635-CDS-H-elongata_contig5758:4050..4134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 4051..4134 -
1622930935.2133543-CDS-H-elongata_contig5758:5906..60291622930935.2133543-CDS-H-elongata_contig5758:5906..6029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 5907..6029 -
1691679631.3160112-CDS-H-elongata_contig5758:5906..60291691679631.3160112-CDS-H-elongata_contig5758:5906..6029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 5907..6029 -
1622930935.263168-CDS-H-elongata_contig5758:6376..65051622930935.263168-CDS-H-elongata_contig5758:6376..6505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 6377..6505 -
1691679631.3262324-CDS-H-elongata_contig5758:6376..65051691679631.3262324-CDS-H-elongata_contig5758:6376..6505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 6377..6505 -
1622930935.4206302-CDS-H-elongata_contig5758:6960..70511622930935.4206302-CDS-H-elongata_contig5758:6960..7051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 6961..7051 -
1691679631.3387997-CDS-H-elongata_contig5758:6960..70511691679631.3387997-CDS-H-elongata_contig5758:6960..7051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 6961..7051 -
1622930935.4440408-CDS-H-elongata_contig5758:7419..75421622930935.4440408-CDS-H-elongata_contig5758:7419..7542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 7420..7542 -
1691679631.3469696-CDS-H-elongata_contig5758:7419..75421691679631.3469696-CDS-H-elongata_contig5758:7419..7542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 7420..7542 -
1622930935.467295-CDS-H-elongata_contig5758:7960..80671622930935.467295-CDS-H-elongata_contig5758:7960..8067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 7961..8067 -
1691679631.3569288-CDS-H-elongata_contig5758:7960..80671691679631.3569288-CDS-H-elongata_contig5758:7960..8067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 7961..8067 -
1622930935.4884005-CDS-H-elongata_contig5758:8506..86101622930935.4884005-CDS-H-elongata_contig5758:8506..8610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 8507..8610 -
1691679631.3665257-CDS-H-elongata_contig5758:8506..86101691679631.3665257-CDS-H-elongata_contig5758:8506..8610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 8507..8610 -
1622930935.5122519-CDS-H-elongata_contig5758:8932..90141622930935.5122519-CDS-H-elongata_contig5758:8932..9014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 8933..9014 -
1691679631.3773031-CDS-H-elongata_contig5758:8932..90141691679631.3773031-CDS-H-elongata_contig5758:8932..9014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5758 8933..9014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5758.13228.1

>prot_H-elongata_contig5758.13228.1 ID=prot_H-elongata_contig5758.13228.1|Name=mRNA_H-elongata_contig5758.13228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=483bp
MGAKKKGRKKGKGRGKGKKEEGPQEESEYYNMDLEMLQEVVPMLKQQLEK
SMLDRNYVQLERDTIQTFYDITQREVEVLELKIAAKDREMELMEDNHSRV
EVRVYVQKVKHLDYEHQNSLKSIAEDGEHLLMNETDLHRQRSSGLARSKK
DLTSEVKKRHILNADEIVQMKKAHVKTLTKMRERFETSLAELRARCDAKL
AQLEGDLGLRRKVDIHEIEERKNQHINDLMGNHEKAFGQMNTYYNDITSD
NLKLIRSLKDELVEMKKKSVANQKLMQDISQENKRLSEPLTKALADVAEL
HAHLKDQEKDRMSLTNAKARLRVIDEQLSEVRDSHRDLEADFANVVEDRD
QLYDTFEGAVRAIQQKSDFRWNLALEQRIGAVEQSMDKAETQLTQIVEAA
KLDPEDLNRVMSGLEDVLAAKNAGVRDLQYAFVRTAKTYNDSLRTYSAKL
KASGVPAAEIDGMGFAPVATSTFLGPAGLVVR*
back to top

mRNA from alignment at H-elongata_contig5758:1820..9014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5758.13228.1 ID=mRNA_H-elongata_contig5758.13228.1|Name=mRNA_H-elongata_contig5758.13228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7195bp|location=Sequence derived from alignment at H-elongata_contig5758:1820..9014- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCCAAGAAAAAAGGCCGCAAGAAGGGCAAGGGCAGGGGCAAGGG CAAAAAAGAAGAAGGACCACAAGAAGAGAGTGGTGAGTTGGATTTCGATC AAACATGTCATTGCTCGAAACGTAAATGACCCCGCCCTGTTAGTGGTTCT GTGAGTGGTTTGTTGAGGTTCGTTGGCAATCATCTCCATCTGAATAGTGC ATACTCATAAAAGGAGGAAGGCAGGTCATCCTAATCCTGGCCGACGTTGT CCCGTGGTTGTCGAACTTTATGCATTCATTGTGAACACGGCACCTTTTTT GTAAGTTTCAGTGGTGCATTTTCACTGCCTCCTGCTGTTCGGTTTTGGGC TCACCTCCTTCGGACGAACGGCTTGCTCCAATGGGTTACGTCTATTACAC ACAGAGTATTATAACATGGATCTGGAGATGCTTCAAGAAGTCGTCCCAAT GCTCAAGCAACAGCTTGAAAAGTCTATGCTTGACCGCAACTATGTTCAGC TGGAGAGAGTGAGTCCACTTCTCGATCTCCACCCTAGTGTACGATAAGCT GTGCCTTCTCAATGACACTAAAGACAGTAAGATACTCTAACATAGCAAGT TAATATATGTAGCATCGAAGCAGTTGAAATGACAACTAGATGATAGACAA ACTTTGTTTGGGGATCATGAATTATTATACAAATTGGACAATGGCATTCA CTACTGGTAATCCTGATGGTCGTTATGAGCTGTCGTAATTTCCTGGTTGG AGTGGCTGGGAGTAAGATAGAAGTAGTGTGTTTTATCTGGGCGCTTGTGG GCGACCCAAAGACATGAGCAACATGTTCGCTCCTCTTACTCGATTCCTTC GGAAGAACCCTGGAGAATGGGGACGGGACGTGCATGCCCGTAAATCAAAG CATGGCGGTGCTTACCCCAGTTCTCGCAATCGATAAATAATGCGCAGGAT ACAATTCAAACCTTTTACGATATCACACAACGCGAAGTCGAGGTTCTGGA GCTAAAGATTGCCGCGAAGGACAGAGAGATGGAGCTCATGGAGGATAATC ACAGGTACACTTTTGTACATAAATTAACCTCGCGCAAGACAAATATGGAC ATCCAGAGAGCCAAATGGTTTAGCTAGCCCCACTGACGTCGATTTCGTAT CACAACTCGTTATTTCACCAACCGCAAACGCCGATATTAACGCAATCAAT CGTTGATGTGCCCTAAACGAGAAAGCGATAGCAAAAACTCGATAAAAACG ACCATTGATCTCGAGCTTGATACCGTGCGAAGCCTCGTCTTAAGAAAGCG GGGACATGAAGCCTCCATTGCCGTGTGCCGTCGGGGTTGTTAAATATGTT GGCCATGATATAGAAGAGAACCCAGCGTTCAAGCATAACATACATTGTGA CTGAAAGACCGACTTGACTTCCTTGTCTACGTAGCGTCTATCAACCCAAC GATTCCCGCTGGACCTCGCGAGCAGGGTCGAGGTCCGCGTTTATGTCCAG AAAGTCAAGCACCTGGACTACGAGCACCAGAATAGCCTCAAGTCTATCGC TGAGGATGGGGAACACTTGCTTATGAATGAAACTGATCTCCACCGGTGAA GGCAAATCTGGCTGTGTACGCCTTTATCGAGGGAAATAATAAGATATACT ACTACACGATGCATGATGAAGTGGCCACCGAGGAAGAATATTTCTTTGGC TCTTTGAAAAACGCACCGATAATAAATGACAAATCGCCCACGCAAGGGTT TTGCACTGCAACGTGTTTTCAATCGCCTTCTCATGCAAAAAAAATGCGGC AAATAGCGAAGAGAGACAACAACGGGTGGCGCCAGCGTGGTAAGTCAGTA GTTCTCGGCCGAAGTTTGTTGGCTGGTCTCGTCCAGCGTGATAAAGAGGC TTATGTCTAGGGTGAGGCCCATTGTTTCTCGCAACGACCGTTTTACGCTG CCGTCGACCGCAGACAGCGAAGTTCTGGGCTGGCGAGATCGAAAAAAGAC CTAACAAGCGAGGTCAAAAAACGACATATCCTCAACGCGGATGAGATTGT ACAGGTTAGAGTTCTCCGAGTCGACGAAGCGCCTGTAGAAGAAAAAAAGT TGACGAGCTCCTGGTGTGTGGCAAGGTTCGCAAAAAACGCCTCTAAACGT GGAGCTCGTTGCTGAGTGACTTAAGAGAAACTCGGCGGAGATAGAATGCC TATTTCGCCTCCAAGCCGGCTTATAGATATATGCACATCGCGCGCTCGTA CCCCAGGATTTTTTTACATTAGTCTAGTTACACGCCGCAGGTGCTTAACT TGGGGCAGGATACGAATTGAACTGTACCCTCCATGCGCATTGAGTAACTT GAGCGAGCTATCGCCGCGCAAGTCATGGCCGCACATCACCTGGCCTACTA TTACTCCGCACATCGCATTACTAGTATCACGATGAGGTGTGAAGATACCA ATCGAGAGAAGATAATTTCCTAATTGGGCGCTCGTTCGACGTCACAACTC TTCCTGTAGATGAAAAAGGCTCACGTCAAAACTCTCACGAAGATGCGAGA AAGGTTCGAGACAAGCCTTGCCGAGCTCCGGGCGCGATGCGACGCGAAAC TCGCCCAGCTGGAGGGGGATCTCGGATTGCGACGAAAAGTGCGTATATTC GCGTGCTCCTGTGTCAAACGATTGCCGCCTGGTCCAGGAAGCCGTCACGA GGCACAAGCGAGCCATTATGCGCCCCCGACACGGCTGAGCGTTTAGTTAC TTCCACGAATTATTTAAAGGAAGCATAAGCAGAAGGGATTGGGTATCTTC CCGAGTGACGATCGCTATCGTCGAAGTCGATCGGTTCAAAACAGTGACAT TGTTGTTGGTCGCACTTTTGGTCCCCTCTAGACCAGCAGCATGGCCGGCA AATTGGCTTACTACGGCGAAAGCGTGTCAAATTGGAAATCGCCACTCTTA CTTGCCTCCCCTTCCTGATGTGTCTCAAAACGAAGGTCGATATCCACGAA ATAGAAGAGCGAAAGAACCAGCACATCAATGATCTTATGGGGAACCACGA AAAGGCTTTCGGGCAGATGAATACGTACTACAACGACATCACTAGTGACA ATCTTAAGGTACGAAGAAGACGGTTGGGGGGAGCAGGGGGGGGGGGGGCA TTTCAAGTCCATGCATCGAGCTTGATGCTTTCGCTGGACGGGTAAATATA TGGCGGCGGGGTGTGGTCAAGTTTTGCATGCCTTGGCTGCTGGATCATTG ACAAGGCGAGGGGGGTGGAATTGGGTTTACAAATATTTTATCCTAGCGGG CATAAACCGCGCGTCAAAACAGTAGTACTGGGACGGAGCGATATATCGGG TTTTCGATGCCCAACCAAGTATGCCCTGCATTTTGATTCGACACATTGGG TGACTAAATGTTGCAGATTCAGCAGACGTTATCGATAGCGTTACCGCTAT CTACTATACTACTGTATAATACTATTAATACAGAGTATCACAAAAAAGAG ATTTGGTCTCGGAGCGAACGTATAAGCCCTGTACGCATACAACATAACAT ACACCACGGTATGGGTATGATACACTCGGAATATAACCTGCTCGTGAATG CTCCTGGCGGATTACTATTAACGAGTTAATGGTTGCTCTATGACTTTCCA ATAATATATCGTTTAGTAGGCATTCTATGCAAAATATTGGAAATTACTAA ACGAACCTGTACAGGTCCGTTTGCAAACTGACCTGTTGTGTTTTTAGCCC CGGTTCCCAGGGTTTCCATGCAATGCATGCCCGTTTGGTTTGTTCAGGCG CAGCCGAGTAGAGCAGCGAGTAAAGCAGCCTCAGGAAGCCTCAGAAACCA CAGAGAGCGTATAATACAGGAGAACCCAACTCGACCCTAACCATAATTCA TACCTACACCGAAATCAAAGTTTACAGATGCTACAGCTGCTGGACTGAGT TTGAAATCAAATGCCTGCACATGTTCGTTTTTCGTGGGTTCGTCAGGCGA GTAAAGCAGCCTCGGGAGCCACAGAGAGCATATGGTTCCTATTTGGGGGG GTGGGTTTGGGTTAGGGTTAGGGTCGGGTTGGGTCCACCAAAATAAACTA CGTAAGAGGTACCCTGGTACTGATTGTAAGTAAGAGAGTCAAAACGACTG TTGTTGTGCTTTAACCATCAGCTACTTATGACACCAAAATTGACATGCAT TGCATGGAAACCCTGGGAACCGGGGCTAAAAAACAACAGGTCCGTTTGCA AACGAACCTGTACAGGCTCGTTTAGTCAAACACCAAAATGTTAATGTTAC GCGGTTCGCTCCTTTGGGAGAGAGACAAGACTCTTCGACAGAGGTCTGAG GTCACAAGACACACTGCATGGACCAACCTGTGCTCGATAGATTAAAAAAA ATACAGCTCCATGCCGCAAGAAGAGCCAACCCTCCCTCGAATCCTAAGGG CAGTGGGGGGTGGGGTAAAGGTATCGGTGAGAGAGGGGGTTAATGATGTG GTGGGGTTTTTTTAACTGAGACACAAACAGCGGCATCAATAAATGAAACC TTGGCTGTCTGCACACCCTCCTCCCCCGACCCAATTGTCAGTCCTTCCGA GGAGACGTGGTCAATGGTCCAACAAATAAGGCATGCAAAACTTGAGTATC CCCCCCCCATCCTTCCATATACTACTTATAACTCCAAGTCCCACCAAGAT TGAATGAAAGTCGGTCACAATGCATGCGCGTGGAATGGCAGTGGCGCGCG TATACACTCGCGGCATCTCGTTCAAGGTGTTCGCCACGGTAAAAATAAAA ATAAAATCGCTCTTGCGCCCTCGTTACCGGCTTGTTTTTATGGCATATAT ATATATATTATAAATATATGATTGCTCCAGCTGATCCGTTCGCTGAAGGA TGAGCTGGTGGAGATGAAGAAGAAATCCGTGGCAAACCAAAAGCTGATGC AGGATATCTCCCAAGTAAGTGTACCACCGCTCTGGGCCACATTCCACAAA AAAAAAGGGTCGGTTGGTGGCCGGATGGCACACAACCCGGAAGGAAAGGC GAGCGATAAAAAGTTATTAATCTGCGAACCACGGGTCCTGCCGTTGATTT ATTTTTCTTATTAACATTAATAGTAAACATATGAACTCATTCAAACACTT CGAACATCCACATATTATTTTCTAGTCTTTACACCATCATGAGAGGCAAA GTTCAGACGACCAACTATCGTCAGGTTCGAGTGTGTACTTACGAGATCAA AATCGTCACATTTTATCATGTGGGGGATGCCAAACCGGCGCGTAGAGTGT GAAGGTTAACCCTTCTGGAACTGGATTTCAAGTTTTATATTGAATTTAGT GTGTAAAAAAGCAGGTCGAGTTCCATAGGGGTTAAAGAGAAGGCGGATTG TTTGAAGTATTATTATGGTACATTAAGGGATTCTGGAGGTAGTAGTATGC TACCAAGGTGGTGATTAACAAAGATCGGAGAGGAGACGAAGCAAGGCAAG GACACCAGAGCAGGTTTTGTTCGCAAAAGAGCTCCACATCACTCCGCGGG TTACATATAGCCTTAGTTGCACGCACGATCGCCACCTGCATGCGCCTTGC GCCTGTTCCCCGCGAATAAATATCGAAGCACCTCGATGTTGGTTCCCGGC GCTGACCGCCAATCACCGCGCGCTGTTCAATCGTTGTCCCCCTTGTGTAG ATCACGATTGATTGCGCTGTTGTTGCTTAACAAAATTAAATGTTGTTCGC TATTATGTTGATCATTGCAGGAAAATAAGCGGCTGAGTGAGCCTCTGACG AAAGCCCTCGCTGACGTCGCCGAGCTCCACGCCCATCTCAAGGATCAAGA GAAGGACCGCATGTCTCTCACCAACGCCAAGGCCAGACTGAGAGTTATAG ATGAACAGGTTCGTAATTAAAAGGGGGGCGTTTTCTATGCATCAACCCTT CCCCTAGTAGCAAGTTAAGTGTATAGCCGAATGATCGGAGCGGTCGATGG GGCGTAGTATCCTTTGCGTTCGCCCGCGAGTGTCTTTTACTGACGGACGC TGGATGAGGTAGTCCGTTCCACGTTATCTCTCATGTCAACCACAGCGGCA GGAACCATTTTCAAAGCCCGTTGTAAATTATTTCACCTGGAACAATTTGT TAACAGTGTGCTGAGTTGCATACTTCGTGCAACGCGCCCGTTGGACAAAT GACACGTGCGTCACCTGCCTTCTTCGCAAGAAAAGCTTTCTGAGGTGCGG GACAGCCACCGGGACCTGGAGGCAGACTTCGCCAATGTGGTCGAGGATCG AGATCAGCTGTATGACACGTTCGAGGGGGCTGTGAGAGCCATTCAGCAAA AGAGCGACTTCAGGTGGTGTAATTTATTTGTTGACGAGACAGAGCGCGGT CCTCGTATACCAGACGACTCACAACCACGCTTGGTAGGATCGTTTTCTGC CCGAACGCGGCCGTTACTTAGATTTCATGGAACCACAGCAAGTCTCGAAT ACGAGAACAGCTCTGCAGGAGCAAGTAGCTCGCCCGCCCGTGGTAGTCAG GCGGGTGGGGCGGAACTCACCTACCTCGAATCGTAACTCGCATCGCTGGG GATCTTGTGGGCAGGAACCTGGCGTTGGAGCAGCGCATAGGCGCTGTCGA ACAATCGATGGATAAGGCGGAGACACAGCTCACGCAAATTGTAGAGGCGG CCAAGGTTCGTACGGCGGCATAACTGTCACCTCATCGAGCATTCATCACT TGCCGTACGCCGATTCGACTGTACTTTTCTGGACACTTCTCAACATCACT GTTCCTAGTTCTTTGACTAAGACAGAAATATGACGTCGGCGGTGAAGAAA GTTGGGGATCAAAAGCAATCGATACGTTGGAGCTCCGATCCTAAGCTAAG CGCTAACCCCACGCCTCGAATTTGCGTCTCGATATGCTCTTACGCGAAGC TGGACCCGGAAGATTTGAATCGCGTCATGTCCGGCCTAGAGGATGTCTTG GCCGCTAAGAACGCGGGCGTGCGCGACCTTCAGTACGCCTTCGTCCGGAC GGCCAAAACCTACAACGACTCCCTTCGCACCTACTCTGCCAAGCTCAAGG CCTCCGGCGTGCCCGCGGCGGAGATCGACGGCATGGGCTTCGCACCGGTG GCAACGAGCACATTCCTCGGTCCAGCAGGGCTTGTCGTCCGCTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5758:1820..9014-

>mRNA_H-elongata_contig5758.13228.1 ID=mRNA_H-elongata_contig5758.13228.1|Name=mRNA_H-elongata_contig5758.13228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2898bp|location=Sequence derived from alignment at H-elongata_contig5758:1820..9014- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCCAAGAAAAAAGGCCGCAAGAAGGGCAAGGGCAGGGGCAAGGG
CAAAAAAGAAGAAGGACCACAAGAAGAGAGTGATGGGGGCCAAGAAAAAA
GGCCGCAAGAAGGGCAAGGGCAGGGGCAAGGGCAAAAAAGAAGAAGGACC
ACAAGAAGAGAGTGAGTATTATAACATGGATCTGGAGATGCTTCAAGAAG
TCGTCCCAATGCTCAAGCAACAGCTTGAAAAGTCTATGCTTGACCGCAAC
TATGTTCAGCTGGAGAGAAGTATTATAACATGGATCTGGAGATGCTTCAA
GAAGTCGTCCCAATGCTCAAGCAACAGCTTGAAAAGTCTATGCTTGACCG
CAACTATGTTCAGCTGGAGAGAGATACAATTCAAACCTTTTACGATATCA
CACAACGCGAAGTCGAGGTTCTGGAGCTAAAGATTGCCGCGAAGGACAGA
GAGATGGAGCTCATGGAGGATAATCACAGGATACAATTCAAACCTTTTAC
GATATCACACAACGCGAAGTCGAGGTTCTGGAGCTAAAGATTGCCGCGAA
GGACAGAGAGATGGAGCTCATGGAGGATAATCACAGCAGGGTCGAGGTCC
GCGTTTATGTCCAGAAAGTCAAGCACCTGGACTACGAGCACCAGAATAGC
CTCAAGTCTATCGCTGAGGATGGGGAACACTTGCTTATGAATGAAACTGA
TCTCCACCGCAGGGTCGAGGTCCGCGTTTATGTCCAGAAAGTCAAGCACC
TGGACTACGAGCACCAGAATAGCCTCAAGTCTATCGCTGAGGATGGGGAA
CACTTGCTTATGAATGAAACTGATCTCCACCGACAGCGAAGTTCTGGGCT
GGCGAGATCGAAAAAAGACCTAACAAGCGAGGTCAAAAAACGACATATCC
TCAACGCGGATGAGATTGTACAGACAGCGAAGTTCTGGGCTGGCGAGATC
GAAAAAAGACCTAACAAGCGAGGTCAAAAAACGACATATCCTCAACGCGG
ATGAGATTGTACAGATGAAAAAGGCTCACGTCAAAACTCTCACGAAGATG
CGAGAAAGGTTCGAGACAAGCCTTGCCGAGCTCCGGGCGCGATGCGACGC
GAAACTCGCCCAGCTGGAGGGGGATCTCGGATTGCGACGAAAAATGAAAA
AGGCTCACGTCAAAACTCTCACGAAGATGCGAGAAAGGTTCGAGACAAGC
CTTGCCGAGCTCCGGGCGCGATGCGACGCGAAACTCGCCCAGCTGGAGGG
GGATCTCGGATTGCGACGAAAAGTCGATATCCACGAAATAGAAGAGCGAA
AGAACCAGCACATCAATGATCTTATGGGGAACCACGAAAAGGCTTTCGGG
CAGATGAATACGTACTACAACGACATCACTAGTGACAATCTTAAGGTCGA
TATCCACGAAATAGAAGAGCGAAAGAACCAGCACATCAATGATCTTATGG
GGAACCACGAAAAGGCTTTCGGGCAGATGAATACGTACTACAACGACATC
ACTAGTGACAATCTTAAGCTGATCCGTTCGCTGAAGGATGAGCTGGTGGA
GATGAAGAAGAAATCCGTGGCAAACCAAAAGCTGATGCAGGATATCTCCC
AACTGATCCGTTCGCTGAAGGATGAGCTGGTGGAGATGAAGAAGAAATCC
GTGGCAAACCAAAAGCTGATGCAGGATATCTCCCAAGAAAATAAGCGGCT
GAGTGAGCCTCTGACGAAAGCCCTCGCTGACGTCGCCGAGCTCCACGCCC
ATCTCAAGGATCAAGAGAAGGACCGCATGTCTCTCACCAACGCCAAGGCC
AGACTGAGAGTTATAGATGAACAGGAAAATAAGCGGCTGAGTGAGCCTCT
GACGAAAGCCCTCGCTGACGTCGCCGAGCTCCACGCCCATCTCAAGGATC
AAGAGAAGGACCGCATGTCTCTCACCAACGCCAAGGCCAGACTGAGAGTT
ATAGATGAACAGCTTTCTGAGGTGCGGGACAGCCACCGGGACCTGGAGGC
AGACTTCGCCAATGTGGTCGAGGATCGAGATCAGCTGTATGACACGTTCG
AGGGGGCTGTGAGAGCCATTCAGCAAAAGAGCGACTTCAGGTGCTTTCTG
AGGTGCGGGACAGCCACCGGGACCTGGAGGCAGACTTCGCCAATGTGGTC
GAGGATCGAGATCAGCTGTATGACACGTTCGAGGGGGCTGTGAGAGCCAT
TCAGCAAAAGAGCGACTTCAGGTGGAACCTGGCGTTGGAGCAGCGCATAG
GCGCTGTCGAACAATCGATGGATAAGGCGGAGACACAGCTCACGCAAATT
GTAGAGGCGGCCAAGGAACCTGGCGTTGGAGCAGCGCATAGGCGCTGTCG
AACAATCGATGGATAAGGCGGAGACACAGCTCACGCAAATTGTAGAGGCG
GCCAAGCTGGACCCGGAAGATTTGAATCGCGTCATGTCCGGCCTAGAGGA
TGTCTTGGCCGCTAAGAACGCGGGCGTGCGCGACCTTCAGTACGCCTTCG
TCCGGACGGCCAAAACCTACAACGACTCCCTTCGCACCTACTCTGCCAAG
CTCAAGGCCTCCGGCGTGCCCGCGGCGGAGATCGACGGCATGGGCTTCGC
ACCGGTGGCAACGAGCACATTCCTCGGTCCAGCAGGGCTTGTCGTCCGCT
AACTGGACCCGGAAGATTTGAATCGCGTCATGTCCGGCCTAGAGGATGTC
TTGGCCGCTAAGAACGCGGGCGTGCGCGACCTTCAGTACGCCTTCGTCCG
GACGGCCAAAACCTACAACGACTCCCTTCGCACCTACTCTGCCAAGCTCA
AGGCCTCCGGCGTGCCCGCGGCGGAGATCGACGGCATGGGCTTCGCACCG
GTGGCAACGAGCACATTCCTCGGTCCAGCAGGGCTTGTCGTCCGCTAA
back to top