mRNA_H-elongata_contig57432.13209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57432.13209.1
Unique NamemRNA_H-elongata_contig57432.13209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57432.13209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57432contigH-elongata_contig57432:676..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.1524808-CDS-H-elongata_contig57432:675..9811622930933.1524808-CDS-H-elongata_contig57432:675..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57432 676..981 +
1691679630.4772866-CDS-H-elongata_contig57432:675..9811691679630.4772866-CDS-H-elongata_contig57432:675..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57432 676..981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.1769092-UTR-H-elongata_contig57432:981..10061622930933.1769092-UTR-H-elongata_contig57432:981..1006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57432 982..1006 +
1691679630.4864225-UTR-H-elongata_contig57432:981..10061691679630.4864225-UTR-H-elongata_contig57432:981..1006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57432 982..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57432.13209.1prot_H-elongata_contig57432.13209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57432 676..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57432.13209.1

>prot_H-elongata_contig57432.13209.1 ID=prot_H-elongata_contig57432.13209.1|Name=mRNA_H-elongata_contig57432.13209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VRTLGQNPFLPLLVSTNLATVSLKLQEDYILYIYLSPKNISCLLGGTTAT
YRAQRLRQEEICIFNGYLDRFYGVCVELGHTLPSCLWRCSVSCPLCGPWV
H*
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mRNA from alignment at H-elongata_contig57432:676..1006+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57432.13209.1 ID=mRNA_H-elongata_contig57432.13209.1|Name=mRNA_H-elongata_contig57432.13209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=331bp|location=Sequence derived from alignment at H-elongata_contig57432:676..1006+ (Himanthalia elongata Himel1 dioecious)
GTGAGAACACTAGGGCAGAACCCCTTCCTCCCACTTCTCGTGAGCACAAA
TCTTGCTACAGTGTCATTGAAGCTGCAGGAAGACTACATCCTGTATATCT
ATCTGTCTCCCAAAAATATCAGCTGTTTGTTGGGGGGCACAACTGCCACG
TATAGAGCACAGAGGCTGCGCCAGGAGGAAATATGTATTTTTAATGGGTA
TCTGGACCGTTTTTATGGCGTGTGTGTTGAACTTGGACATACTCTTCCCA
GCTGCCTCTGGAGATGTTCTGTCTCTTGCCCTCTTTGCGGGCCATGGGTA
CACTAAGGACATTTTTAAATATGTTGCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig57432:676..1006+

>mRNA_H-elongata_contig57432.13209.1 ID=mRNA_H-elongata_contig57432.13209.1|Name=mRNA_H-elongata_contig57432.13209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig57432:676..1006+ (Himanthalia elongata Himel1 dioecious)
GTGAGAACACTAGGGCAGAACCCCTTCCTCCCACTTCTCGTGAGCACAAA
TCTTGCTACAGTGTCATTGAAGCTGCAGGAAGACTACATCCTGTATATCT
ATCTGTCTCCCAAAAATATCAGCTGTTTGTTGGGGGGCACAACTGCCACG
TATAGAGCACAGAGGCTGCGCCAGGAGGAAATATGTATTTTTAATGGGTA
TCTGGACCGTTTTTATGGCGTGTGTGTTGAACTTGGACATACTCTTCCCA
GCTGCCTCTGGAGATGTTCTGTCTCTTGCCCTCTTTGCGGGCCATGGGTA
CACTAAGTGAGAACACTAGGGCAGAACCCCTTCCTCCCACTTCTCGTGAG
CACAAATCTTGCTACAGTGTCATTGAAGCTGCAGGAAGACTACATCCTGT
ATATCTATCTGTCTCCCAAAAATATCAGCTGTTTGTTGGGGGGCACAACT
GCCACGTATAGAGCACAGAGGCTGCGCCAGGAGGAAATATGTATTTTTAA
TGGGTATCTGGACCGTTTTTATGGCGTGTGTGTTGAACTTGGACATACTC
TTCCCAGCTGCCTCTGGAGATGTTCTGTCTCTTGCCCTCTTTGCGGGCCA
TGGGTACACTAA
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