mRNA_H-elongata_contig57427.13206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57427.13206.1
Unique NamemRNA_H-elongata_contig57427.13206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: D7FZB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB1_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 7.540e-65
Identity = 121/239 (50.63%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    4 LLVIAVPSIRLDRREKIRETWMNWADDCVTLRFFTEPS-----DDEETTISQRNELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHCVRT-KTRNDEAYLLLSEPLLDRVLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAAKRNGK--KNPGITNVCEDYIGIHHAFPERIDLLW 696
            LLV+A+ S R +RR  IR TW  W D+ V LRFFTE       D E  T +   E+  H D+V++DI+SGMNF +KL+ AM+WMS  + F+FFLRLDDDYFL L RLL EL+ T  TT  EP P +YAG + C R+  TR DEAY+LLS  L+ RVL+   LMCGGHGGVT G+WFT GN  NEAGDV W+HDPRL           +G+  K     NVC+ ++G+H  +P+ +  +W
Sbjct:  326 LLVVAILSARPERRNAIRSTWSAWGDERVELRFFTEAPAENNPDAESITAALEEEMALHQDVVLMDIDSGMNFALKLVWAMQWMSHRWMFNFFLRLDDDYFLCLGRLLHELETTFKTTQ-EP-PKIYAGHITCGRSGNTRIDEAYMLLSTSLVTRVLSTTDLMCGGHGGVTAGWWFTPGNPLNEAGDVTWVHDPRL---------DHSGRALKQESADNVCKTHMGLHKIYPDTMTEVW 553          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: D8LCM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM9_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 6.680e-62
Identity = 123/240 (51.25%), Postives = 154/240 (64.17%), Query Frame = 1
Query:    4 LLVIAVPSIRLDRREKIRETWMNWADDCVTLRFFTEPS-----DDEETTISQRNELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPLLDRVLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLWPPA 705
            LLVIAV S R +RR+ IR  W  W DD V LRFFTE       D + T+ +   E   HGDLV++DI+ GMNF +KL+ AMRWMS+ F FDFFLRLDDDYFL L RLL+ELDAT L    +P+  +YAG  +C V  + R DEAYLLLS  L+ RVL+   L+C GH GVT  +WFT GN  N  GDV W+HDPRL  +E         ++ P   +VC  ++G+HHA+P+ I  LW  A
Sbjct:  504 LLVIAVVSARSERRDAIRAGWSAWGDDRVELRFFTEAPAGSGPDSQATSAALEEESAVHGDLVLMDIDPGMNFALKLVWAMRWMSKQFSFDFFLRLDDDYFLCLGRLLDELDAT-LAGAEQPLN-IYAGHRYCEVWGRARIDEAYLLLSSALVGRVLSAPDLVCSGHAGVTAAWWFTKGNPLNRMGDVEWVHDPRLD-HEGDLLLDSPKEQYP---DVCTTHMGVHHAYPDSIAELWEGA 737          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: A0A6H5JQ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ39_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.810e-55
Identity = 105/239 (43.93%), Postives = 151/239 (63.18%), Query Frame = 1
Query:    4 LLVIAVPSIRLDRREKIRETWMNWADDCVTLRFFTE---PSDDEETTISQRNELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPLLDRVLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAAKRNGKKNPGI-TNVCEDYIGIHHAFPERIDLLWPPA 705
            +LVIAV S R DRR  +R++W+ W D+ V +RFF E   P   ++T+++Q +    HGD+V++DI+ GMNFG+KL+ A+RWMS+ F FDFFLRLDDDYFL L RLL+EL+  +     E    +Y G + C V   TR DEAY+LLSE L+ RV++   L C    G T  +WF  G+  N+ GDV W++DPRL  + K+          P +  +VC  ++G+HH +PE++ + W  A
Sbjct:  477 MLVIAVVSARPDRRHAVRQSWLTWEDERVEVRFFVEKPEPGSADDTSLAQESAA--HGDIVMMDIDPGMNFGLKLVWALRWMSDEFTFDFFLRLDDDYFLCLRRLLDELEIARAVA--EAPLRIYGGLVMCNVYHMTRIDEAYMLLSEDLVRRVVDTPDLQCASDAGTTASWWFAEGHPLNQLGDVKWVNDPRLDHFGKIIDGP------PELFADVCVAHMGVHHTYPEQMGIFWEAA 705          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: A0A2B4RP74_STYPI (Hexosyltransferase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RP74_STYPI)

HSP 1 Score: 131 bits (329), Expect = 6.650e-33
Identity = 89/239 (37.24%), Postives = 124/239 (51.88%), Query Frame = 1
Query:    7 LVIAVPS--IRLDRREKIRETWMNW-ADDCVTLRFFTEPSDDEETTISQR--NELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPL-LDRVLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLA--IYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLW 696
            L++A+ S  IR DRRE IR TWMN  + + V  RFFT+   D E  +     NE   +GDL  + +  G NFG++LL  M W  E ++FDFFLR+DDDYF+ L RLL E+          P   LY G +HC V    R DE +LLLS  L L+     + L+C   G  T   W       N+  DVI+ HDPR+   +  K+P  K        ++ +C  YI +H ++   + + W
Sbjct:   65 LIVAILSAPIRFDRREGIRRTWMNQCSSEEVVCRFFTDSLSDMEPNVRSVLVNESAKYGDLEFMPVPKGYNFGLRLLWLMEWSVERYEFDFFLRMDDDYFVCLKRLLFEIPF-------RPQKRLYWGYVHCEVEGLVRIDEGFLLLSGDLVLEFTSKRDKLLCHPFGDQTIAIWI------NDVQDVIFFHDPRIFHDVSAKVPEFK-------SLSKMCLKYISLHGSYLHEMLIYW 283          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: A0A3M6T6K1_POCDA (Hexosyltransferase n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T6K1_POCDA)

HSP 1 Score: 132 bits (332), Expect = 6.900e-33
Identity = 92/239 (38.49%), Postives = 124/239 (51.88%), Query Frame = 1
Query:    7 LVIAVPS--IRLDRREKIRETWMNW-ADDCVTLRFFTEPSDDEETTISQR--NELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPL-LDRVLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLA--IYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLW 696
            L++A+ S  IR DRRE IR TWMN  + + V  RFFT+   D E  +     NE   +GDL  + I  G NFG++LL  M W +E ++FDFFLR+DDDYF+ L RLL E+          P   LY G +HC V    R DE +LLLSE L L+       L+C   G  T   W       N+  +VI+ HDPR+   +  K+P  K   K       +C  YI +H ++   + L W
Sbjct:  123 LIVAILSAPIRFDRREGIRRTWMNQCSSEEVVCRFFTDSLFDMEPNVRSVLVNESNQYGDLEFMPIPKGYNFGLRLLWLMEWSAERYEFDFFLRMDDDYFVCLKRLLFEIPF-------RPQKRLYWGYVHCEVEGLVRIDEGFLLLSEDLVLEFTRKRNKLLCHPFGDQTVAIWM------NDVKNVIFFHDPRIFHDVSAKVPEFKSFDK-------MCLKYISLHGSYLHEMLLYW 341          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: UPI0009E1A2F2 (beta-1,3-galactosyltransferase 6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1A2F2)

HSP 1 Score: 127 bits (318), Expect = 6.710e-31
Identity = 87/243 (35.80%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    1 KLLVIAVPS-IRLDRREKIRETWMNWAD-DCVTLRFFTEPSDDEETTISQ--RNELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPLLDRVLNIEG-LMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLA--IYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLWPPA 705
            KL+V  + + IR DRRE IR TWMN  + + V  RFFT+   D E  +     NE   +GDL  + I  G NFG++LL  M W  + + FDFFLR+DDDYF+ L RLL E+          P   LY G +HC V    R DE +L+LS  L+   +  +  L+C   G  T   W       N+  +VI+ HDPR+   +   +P  K        +  VC  YI +H ++   + + W  A
Sbjct:  117 KLIVTILSAPIRFDRREGIRRTWMNQCNSEEVVCRFFTDSLSDMEPKVQSVLANESAKYGDLEFMPIPKGYNFGLRLLWLMEWSVQRYDFDFFLRMDDDYFVCLKRLLFEIPF-------RPQKRLYWGYVHCEVEGLVRVDEGFLILSADLVQEFMGRKDELLCHPFGDQTIAIWM------NDVKNVIYFHDPRIFHDVTAHIPEFKL-------LREVCGTYISLHGSYLHEMLIYWKSA 339          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: UPI00077A827D (beta-1,3-galactosyltransferase 6-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A827D)

HSP 1 Score: 124 bits (311), Expect = 7.490e-30
Identity = 89/243 (36.63%), Postives = 121/243 (49.79%), Query Frame = 1
Query:    7 LVIAVPS--IRLDRREKIRETWMNWADDC----VTLRFFTEPSDDEETTISQ--RNELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPLLDRVLNI-EGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLWPPA 705
            LV+A+ S  IR DRRE IR TWM    DC    V  RFFT+   D E  +     NE   + DL  + +  G NFG++LL  M W ++ + FDFFLR+DDDYF+ L RLL E+          P   LY G LHC V    R DE +L+L+  L+   +   + L+C   G  T   W       N+A + I+ HDPR  IY  + A     K    +  VC  Y+ +H ++   + L W  A
Sbjct:  124 LVVAILSAPIRFDRREGIRRTWMK---DCNSEEVVCRFFTDSLSDMEPKVQTVLANESIKYDDLEFMPVPKGYNFGLRLLWLMEWSTQKYNFDFFLRMDDDYFVCLKRLLFEIPF-------RPQKRLYWGYLHCEVEGLVRIDEGFLILAGDLVREFMRKKDDLLCHPFGDQTIALWM------NDADNTIYFHDPR--IYHDVTAHIPEFKS---LKEVCGTYLSLHGSYLHEMLLYWQIA 345          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: UPI00109BE7AC (beta-1,3-galactosyltransferase 6-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE7AC)

HSP 1 Score: 122 bits (305), Expect = 2.220e-29
Identity = 82/240 (34.17%), Postives = 122/240 (50.83%), Query Frame = 1
Query:    7 LVIAVPSI--RLDRREKIRETWMNWADDC----VTLRFFTEPSDDEETTISQRNELED--HGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHC-VRTKTRNDEAYLLLSEPLLDR-VLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLW 696
            L++A+ S   R+DRR+ IR TWMN   DC    V  RFFT+       T+ +    E   HGD+  + +  G+NFG++++  ++W   ++ FDFFLR+DDDYFL L +LL E+       Y   +P L  G +HC    + R DE +L+LS  L+   V N + L+C  +G  T   W       N   DV   HDPR  +  ++ A     K N     +C  Y+G+H ++     L W
Sbjct:   66 LIVAILSAPNRVDRRKGIRMTWMN---DCSRIDVLCRFFTDSLVQMNPTVKRALXEESLRHGDIEFMSVPGGINFGLRMIWLLQWSVSNYDFDFFLRIDDDYFLCLRKLLAEIP------YRAHVPKLCWGHVHCYTEGQVRMDEGFLILSSDLVKEFVKNKDSLLCHPYGDQTVALWM------NNRTDVTRFHDPR--VVHEVTAHNAQFKANK---EICNTYLGLHGSYLHENLLYW 285          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: A7RHN5_NEMVE (Hexosyltransferase n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RHN5_NEMVE)

HSP 1 Score: 118 bits (295), Expect = 5.930e-28
Identity = 82/234 (35.04%), Postives = 119/234 (50.85%), Query Frame = 1
Query:    7 LVIAVPS--IRLDRREKIRETWMNWADDCVT----LRFFTEPSDDEETTISQ---RNELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHCVRTKTRNDEAYLLLSEPLL-DRVLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPE 678
            LVIA+ +  +R DRR+ +RETWM    +CV      RFFT+  +D E    Q   ++E   H D+  + +  G NFG +++  + W    + F FFLRLDDDYF+ L RLL EL   +L      +P LY G +HC + + R DEA+LL+S  L  D V N   L+C  +G  +   W       N   DV++ HD R+     L     +       TN+C   +G+H  + E
Sbjct:   60 LVIAIVTSPLRTDRRKVLRETWMK---ECVRPDILCRFFTDRLEDIEPWALQTALQDESSTHNDIEFMPVPQGYNFGWRMIWILEWAFNKYSFHFFLRLDDDYFVCLRRLLHELPR-RLN-----VPRLYWGYIHCKKGQVRADEAFLLISYKLAKDFVSNKNNLLCHPYGDQSVALWL------NHRRDVVYFHDHRIMHEHTL----LDDSMLETTTNMCNIVLGVHKTYVE 274          
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Match: A0A6P8J4Y8_ACTTE (Hexosyltransferase n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J4Y8_ACTTE)

HSP 1 Score: 115 bits (288), Expect = 4.640e-27
Identity = 83/242 (34.30%), Postives = 118/242 (48.76%), Query Frame = 1
Query:    7 LVIAVPSI--RLDRREKIRETWMNWADDC----VTLRFFTEPSDDEETTISQR--NELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGLDRLLEELDATKLTTYPEPMPPLYAGSLHCVRT-KTRNDEAYLLLSEPLLDR-VLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLA--IYEKLPAAKRNGKKNPGITNVCEDYIGIHHAFPERIDLLW 696
            LV+A+ S   R+DRR  IR TWMN   DC    V  RFFT+     E  +      E   HGD+  + I  GMNFG+++L  M W  +++ FDFFLR+DDDYFL L +LL E+           +P LY G +HCV   + R DE +L+LS  L+   V   + L+C  +G      W       N   D+   HDPR+   +    P  KR  +       +C  Y+ +H ++     + W
Sbjct:   48 LVVAILSAPKRMDRRTGIRLTWMN---DCSRKDVLCRFFTDQLTSIEPQVKTAIVKEKLTHGDIEFMPIAGGMNFGLRMLWLMEWSVQNYDFDFFLRIDDDYFLCLRKLLGEIPRRV------HVPRLYWGYVHCVAEGQVRVDEGFLILSSDLVKEFVSKKDSLLCHPYGDQAVAIWL------NNRTDITRFHDPRVIHDVTAHNPQFKRANE-------LCNTYLSLHGSYLHENLIYW 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57427.13206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB1_ECTSI7.540e-6550.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCM9_ECTSI6.680e-6251.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JQ39_9PHAE1.810e-5543.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2B4RP74_STYPI6.650e-3337.24Hexosyltransferase n=2 Tax=Stylophora pistillata T... [more]
A0A3M6T6K1_POCDA6.900e-3338.49Hexosyltransferase n=1 Tax=Pocillopora damicornis ... [more]
UPI0009E1A2F26.710e-3135.80beta-1,3-galactosyltransferase 6-like n=1 Tax=Orbi... [more]
UPI00077A827D7.490e-3036.63beta-1,3-galactosyltransferase 6-like n=2 Tax=Acro... [more]
UPI00109BE7AC2.220e-2934.17beta-1,3-galactosyltransferase 6-like n=1 Tax=Exai... [more]
A7RHN5_NEMVE5.930e-2835.04Hexosyltransferase n=2 Tax=Nematostella vectensis ... [more]
A0A6P8J4Y8_ACTTE4.640e-2734.30Hexosyltransferase n=2 Tax=Actinia tenebrosa TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57427contigH-elongata_contig57427:811..1515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue1.9e-55
Seed eggNOG ortholog2880.D7FZB1
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
EggNOG free text desc.plant-type cell wall cellulose biosynthetic process
EggNOG OGs28KU8@1,2QTAG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.8877723-CDS-H-elongata_contig57427:810..15151622930932.8877723-CDS-H-elongata_contig57427:810..1515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57427 811..1515 +
1691679630.3681262-CDS-H-elongata_contig57427:810..15151691679630.3681262-CDS-H-elongata_contig57427:810..1515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57427 811..1515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57427.13206.1prot_H-elongata_contig57427.13206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57427 811..1515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57427.13206.1

>prot_H-elongata_contig57427.13206.1 ID=prot_H-elongata_contig57427.13206.1|Name=mRNA_H-elongata_contig57427.13206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
KLLVIAVPSIRLDRREKIRETWMNWADDCVTLRFFTEPSDDEETTISQRN
ELEDHGDLVILDIESGMNFGVKLLEAMRWMSEHFKFDFFLRLDDDYFLGL
DRLLEELDATKLTTYPEPMPPLYAGSLHCVRTKTRNDEAYLLLSEPLLDR
VLNIEGLMCGGHGGVTTGYWFTVGNAANEAGDVIWLHDPRLAIYEKLPAA
KRNGKKNPGITNVCEDYIGIHHAFPERIDLLWPPA
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mRNA from alignment at H-elongata_contig57427:811..1515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57427.13206.1 ID=mRNA_H-elongata_contig57427.13206.1|Name=mRNA_H-elongata_contig57427.13206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig57427:811..1515+ (Himanthalia elongata Himel1 dioecious)
AAGCTTTTGGTAATCGCCGTGCCCTCGATTCGGTTGGACAGACGCGAGAA GATAAGAGAGACCTGGATGAATTGGGCAGATGATTGTGTCACGTTGCGCT TTTTTACGGAGCCTTCGGACGACGAAGAGACCACTATTTCTCAAAGGAAC GAGCTTGAAGACCACGGAGATTTGGTAATCTTGGACATAGAGTCGGGGAT GAACTTCGGTGTTAAGCTACTAGAAGCCATGCGTTGGATGTCAGAACATT TTAAGTTTGATTTTTTCCTCCGTTTGGACGATGACTACTTCCTCGGTCTT GATCGTCTCCTGGAGGAGCTCGACGCCACAAAGCTTACCACATACCCTGA GCCAATGCCTCCTCTTTATGCTGGGTCCCTCCATTGCGTGCGTACGAAAA CTCGAAATGACGAAGCATACTTGCTCTTGTCCGAACCACTTTTGGACCGG GTTTTGAATATCGAGGGCCTGATGTGCGGTGGTCACGGAGGCGTGACGAC AGGTTACTGGTTTACTGTAGGCAACGCCGCAAACGAGGCTGGCGACGTAA TTTGGCTTCATGACCCTCGCTTAGCAATTTACGAGAAATTACCGGCAGCA AAAAGGAACGGCAAAAAGAACCCCGGCATCACGAACGTGTGTGAGGATTA TATTGGTATCCACCACGCATTCCCGGAACGAATTGACCTTTTGTGGCCCC CAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig57427:811..1515+

>mRNA_H-elongata_contig57427.13206.1 ID=mRNA_H-elongata_contig57427.13206.1|Name=mRNA_H-elongata_contig57427.13206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig57427:811..1515+ (Himanthalia elongata Himel1 dioecious)
AAGCTTTTGGTAATCGCCGTGCCCTCGATTCGGTTGGACAGACGCGAGAA
GATAAGAGAGACCTGGATGAATTGGGCAGATGATTGTGTCACGTTGCGCT
TTTTTACGGAGCCTTCGGACGACGAAGAGACCACTATTTCTCAAAGGAAC
GAGCTTGAAGACCACGGAGATTTGGTAATCTTGGACATAGAGTCGGGGAT
GAACTTCGGTGTTAAGCTACTAGAAGCCATGCGTTGGATGTCAGAACATT
TTAAGTTTGATTTTTTCCTCCGTTTGGACGATGACTACTTCCTCGGTCTT
GATCGTCTCCTGGAGGAGCTCGACGCCACAAAGCTTACCACATACCCTGA
GCCAATGCCTCCTCTTTATGCTGGGTCCCTCCATTGCGTGCGTACGAAAA
CTCGAAATGACGAAGCATACTTGCTCTTGTCCGAACCACTTTTGGACCGG
GTTTTGAATATCGAGGGCCTGATGTGCGGTGGTCACGGAGGCGTGACGAC
AGGTTACTGGTTTACTGTAGGCAACGCCGCAAACGAGGCTGGCGACGTAA
TTTGGCTTCATGACCCTCGCTTAGCAATTTACGAGAAATTACCGGCAGCA
AAAAGGAACGGCAAAAAGAACCCCGGCATCACGAACGTGTGTGAGGATTA
TATTGGTATCCACCACGCATTCCCGGAACGAATTGACCTTTTGTGGCCCC
CAGCGAAGCTTTTGGTAATCGCCGTGCCCTCGATTCGGTTGGACAGACGC
GAGAAGATAAGAGAGACCTGGATGAATTGGGCAGATGATTGTGTCACGTT
GCGCTTTTTTACGGAGCCTTCGGACGACGAAGAGACCACTATTTCTCAAA
GGAACGAGCTTGAAGACCACGGAGATTTGGTAATCTTGGACATAGAGTCG
GGGATGAACTTCGGTGTTAAGCTACTAGAAGCCATGCGTTGGATGTCAGA
ACATTTTAAGTTTGATTTTTTCCTCCGTTTGGACGATGACTACTTCCTCG
GTCTTGATCGTCTCCTGGAGGAGCTCGACGCCACAAAGCTTACCACATAC
CCTGAGCCAATGCCTCCTCTTTATGCTGGGTCCCTCCATTGCGTGCGTAC
GAAAACTCGAAATGACGAAGCATACTTGCTCTTGTCCGAACCACTTTTGG
ACCGGGTTTTGAATATCGAGGGCCTGATGTGCGGTGGTCACGGAGGCGTG
ACGACAGGTTACTGGTTTACTGTAGGCAACGCCGCAAACGAGGCTGGCGA
CGTAATTTGGCTTCATGACCCTCGCTTAGCAATTTACGAGAAATTACCGG
CAGCAAAAAGGAACGGCAAAAAGAACCCCGGCATCACGAACGTGTGTGAG
GATTATATTGGTATCCACCACGCATTCCCGGAACGAATTGACCTTTTGTG
GCCCCCAGCG
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