prot_H-elongata_contig57408.13205.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57408.13205.1
Unique Nameprot_H-elongata_contig57408.13205.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
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BLAST of mRNA_H-elongata_contig57408.13205.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.620e-14
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:    6 SYFVILTAALALTILFYMMFTAFGMTAFQAAAPFIGTLALVFGVAHYLDRANESED-AKARGSRMGSASKDKTLSASGGVAPKGKGSAALPKRRRVAD 102
            +Y V++T AL++T L ++M++A+G+ A +AAAPF+GT+ALVF VAH LDRA+E+ED AKA           K+    G  A     + A+PKRRR+AD
Sbjct:    7 TYLVLVTVALSVTYLSFLMYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAEDTAKAA---------PKSTQGGGTTAKPTATTPAIPKRRRIAD 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57408.13205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE6.620e-1446.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..53
NoneNo IPR availableTMHMMTMhelixcoord: 31..53
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57408contigH-elongata_contig57408:2390..2698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57408.13205.1mRNA_H-elongata_contig57408.13205.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57408 2339..3073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57408.13205.1 ID=prot_H-elongata_contig57408.13205.1|Name=mRNA_H-elongata_contig57408.13205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MNSMFSYFVILTAALALTILFYMMFTAFGMTAFQAAAPFIGTLALVFGVA
HYLDRANESEDAKARGSRMGSASKDKTLSASGGVAPKGKGSAALPKRRRV
AD*
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