mRNA_H-elongata_contig57356.13202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57356.13202.1
Unique NamemRNA_H-elongata_contig57356.13202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: I3L3Z8_HUMAN (Pre-mRNA-processing-splicing factor 8 (Fragment) n=4 Tax=Boreoeutheria TaxID=1437010 RepID=I3L3Z8_HUMAN)

HSP 1 Score: 184 bits (467), Expect = 5.070e-57
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVRTDFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   70 DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 149
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A392Q2T9_9FABA (Pre-mRNA-processing-splicing factor 8-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q2T9_9FABA)

HSP 1 Score: 181 bits (458), Expect = 2.580e-56
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVR DFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   70 DRHTLAYDKGWRVRADFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 149
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A1S3GU36_DIPOR (pre-mRNA-processing-splicing factor 8-like n=2 Tax=Bilateria TaxID=33213 RepID=A0A1S3GU36_DIPOR)

HSP 1 Score: 184 bits (467), Expect = 4.240e-56
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVRTDFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   39 DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 118
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A1B6JTR3_9HEMI (U6-snRNA_bdg domain-containing protein (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A1B6JTR3_9HEMI)

HSP 1 Score: 182 bits (462), Expect = 1.060e-55
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWR+RT+FKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:  114 DRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 193
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: UPI0019670C2E (pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI0019670C2E)

HSP 1 Score: 180 bits (456), Expect = 1.260e-55
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVR DFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTD+IQALGG+EGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   32 DRHTLAYDKGWRVRLDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGIEGILEHTLFKGTYFPTWEGLFWEK 111
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A0S7F200_9TELE (PRP8 n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7F200_9TELE)

HSP 1 Score: 184 bits (467), Expect = 2.020e-55
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVRTDFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   70 DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 149
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A183EJP3_9BILA (U6-snRNA_bdg domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EJP3_9BILA)

HSP 1 Score: 178 bits (452), Expect = 2.170e-55
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVRT+FK YQIL+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLF+GTYFPTWEGLFWE+
Sbjct:   58 DRHTLAYDKGWRVRTEFKTYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFRGTYFPTWEGLFWER 137
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A2P8XBN0_BLAGE (Pre-mRNA-processing-splicing factor 8 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XBN0_BLAGE)

HSP 1 Score: 182 bits (462), Expect = 5.530e-55
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWR+RT+FKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:  177 DRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 256
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A183DN27_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DN27_9BILA)

HSP 1 Score: 178 bits (452), Expect = 7.520e-55
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVRT+FK YQIL+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLF+GTYFPTWEGLFWE+
Sbjct:  121 DRHTLAYDKGWRVRTEFKTYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFRGTYFPTWEGLFWER 200
[Close]
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A0R3TIL3_RODNA (Uncharacterized protein n=2 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TIL3_RODNA)

HSP 1 Score: 182 bits (463), Expect = 9.060e-55
Identity = 77/80 (96.25%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 240
            DRHTLAYDKGWRVRT+FKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   24 DRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I3L3Z8_HUMAN5.070e-5797.50Pre-mRNA-processing-splicing factor 8 (Fragment) n... [more]
A0A392Q2T9_9FABA2.580e-5695.00Pre-mRNA-processing-splicing factor 8-like (Fragme... [more]
A0A1S3GU36_DIPOR4.240e-5697.50pre-mRNA-processing-splicing factor 8-like n=2 Tax... [more]
A0A1B6JTR3_9HEMI1.060e-5595.00U6-snRNA_bdg domain-containing protein (Fragment) ... [more]
UPI0019670C2E1.260e-5593.75pre-mRNA-processing-splicing factor 8A-like n=1 Ta... [more]
A0A0S7F200_9TELE2.020e-5597.50PRP8 n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A183EJP3_9BILA2.170e-5593.75U6-snRNA_bdg domain-containing protein n=1 Tax=Gon... [more]
A0A2P8XBN0_BLAGE5.530e-5595.00Pre-mRNA-processing-splicing factor 8 n=1 Tax=Blat... [more]
A0A183DN27_9BILA7.520e-5593.75Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A0R3TIL3_RODNA9.060e-5596.25Uncharacterized protein n=2 Tax=Rodentolepis nana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57356contigH-elongata_contig57356:2388..3435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.2e-44
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.5101426-CDS-H-elongata_contig57356:2387..24891622930932.5101426-CDS-H-elongata_contig57356:2387..2489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57356 2388..2489 -
1691679630.2113848-CDS-H-elongata_contig57356:2387..24891691679630.2113848-CDS-H-elongata_contig57356:2387..2489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57356 2388..2489 -
1622930932.5275648-CDS-H-elongata_contig57356:3282..34351622930932.5275648-CDS-H-elongata_contig57356:3282..3435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57356 3283..3435 -
1691679630.2230654-CDS-H-elongata_contig57356:3282..34351691679630.2230654-CDS-H-elongata_contig57356:3282..3435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57356 3283..3435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57356.13202.1prot_H-elongata_contig57356.13202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57356 2388..3435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57356.13202.1

>prot_H-elongata_contig57356.13202.1 ID=prot_H-elongata_contig57356.13202.1|Name=mRNA_H-elongata_contig57356.13202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKVIVT*
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mRNA from alignment at H-elongata_contig57356:2388..3435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57356.13202.1 ID=mRNA_H-elongata_contig57356.13202.1|Name=mRNA_H-elongata_contig57356.13202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig57356:2388..3435- (Himanthalia elongata Himel1 dioecious)
GATCGGCACACCTTGGCGTACGACAAGGGGTGGCGAGTCAGGACAGACTT
CAAGCAGTATCAAATCCTCAGGCAAAATCCCTTCTGGTGGACACATCAAC
GTCACGATGGAAAGCTGTGGAACCTCAACAATTACCGGACGGACATGATC
CAGGTAACGCCACCCACACTACAATGGGTAATTAATAGGTAACAATTACC
GGACGGAGATGATCCAGGTAACCAGCGTGGCAACGTAAGATAGCGGCGCA
TTGGGTTGCAAATCCCTCCACACACACAAACACTCACACGCATGTGGAGC
TAGCGACCAACCAGTCTAAGCTCGAGTCATCGCCAACCTGAAGAGCTCGT
CCGTTTTATTCGGGTCTTTGATTGAAGTAGGTGATTGATGACGCGGCGGT
GCGGGGTGGACATCCTTCTCGTCTGTAGTGACTGTATATACTTAGTGCAA
GAGATAAAAATAAAATAAAACATATTTTTTTTGCAGGAAAGAAGGGAGGC
ACGCACCCTGGAAGTCTTGATTTGAAGTAGCCGCTTGCCGGTTGCAGAGA
GCCGGATCATTTTAAGAAAGTGCCTGCATTGCCGGATCATTTTTTAAATC
CGCCTTTTTTATAAAACGCTGGAAAGAGAACATAAGCACTAACCTAGGCT
GAGCTTTCGGGAAATGTCGTCCTAGAGCTGTCCGTGTTCGGAGGCGTGAC
TGAAGGCCGGGATAAGGGGGGATGCGGTAGCGCGTACATCGCTATAAATA
TTTAATAGTGACATATAGTACGAAAATCGTGTGCCTGTTGACTCGACGTG
AGTCCATATTTTTAGAGCTTCCCCATCCCCTCCCCAACCCTGACCTAATT
GGATGTTTTCAATACGTTTCTTTTCTGACCCTCCCCCCTTACCCCTGTCC
CCTCTCCAAACGGTTTTGTCTGTGGGGTTTCCTTTTTCCTGGACAGGCGT
TGGGGGGTGTTGAAGGCATCCTGGAGCACACGCTCTTCAAGGGCACCTAT
TTCCCCACGTGGGAAGGACTGTTCTGGGAGAAGGTAATTGTGACATAG
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Coding sequence (CDS) from alignment at H-elongata_contig57356:2388..3435-

>mRNA_H-elongata_contig57356.13202.1 ID=mRNA_H-elongata_contig57356.13202.1|Name=mRNA_H-elongata_contig57356.13202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig57356:2388..3435- (Himanthalia elongata Himel1 dioecious)
GATCGGCACACCTTGGCGTACGACAAGGGGTGGCGAGTCAGGACAGACTT
CAAGCAGTATCAAATCCTCAGGCAAAATCCCTTCTGGTGGACACATCAAC
GTCACGATGGAAAGCTGTGGAACCTCAACAATTACCGGACGGACATGATC
CAGGATCGGCACACCTTGGCGTACGACAAGGGGTGGCGAGTCAGGACAGA
CTTCAAGCAGTATCAAATCCTCAGGCAAAATCCCTTCTGGTGGACACATC
AACGTCACGATGGAAAGCTGTGGAACCTCAACAATTACCGGACGGACATG
ATCCAGGCGTTGGGGGGTGTTGAAGGCATCCTGGAGCACACGCTCTTCAA
GGGCACCTATTTCCCCACGTGGGAAGGACTGTTCTGGGAGAAGGTAATTG
TGACATAGGCGTTGGGGGGTGTTGAAGGCATCCTGGAGCACACGCTCTTC
AAGGGCACCTATTTCCCCACGTGGGAAGGACTGTTCTGGGAGAAGGTAAT
TGTGACATAG
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