mRNA_H-elongata_contig57333.13200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57333.13200.1
Unique NamemRNA_H-elongata_contig57333.13200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.520e-13
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   19 ELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            ELNKNPPEGVSVGLA DDNMF WELLIVGP DT+
Sbjct:   15 ELNKNPPEGVSVGLANDDNMFMWELLIVGPADTL 48
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A067BQS6_SAPPC (UBC core domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BQS6_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 1.400e-11
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            LR    EL++NPPEGVSVGL +D+N+F WE+++VGPPDT+
Sbjct:    8 LRRQLTELSRNPPEGVSVGLGDDENIFHWEIMLVGPPDTL 47
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A662Y7G3_9STRA (UBC core domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7G3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.860e-11
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            LR    E+++NPPEGVSVGL +D+N+F WE+L+VGPPDT+
Sbjct:   12 LRRQFLEMSRNPPEGVSVGLGDDENIFNWEILLVGPPDTL 51
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.630e-11
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   19 ELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            ELN+NPPEGVSVGL +D N++ WELLIVGPPDT+
Sbjct:   15 ELNRNPPEGVSVGLVDDSNIYQWELLIVGPPDTL 48
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A2D4BQ33_PYTIN (UBC core domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ33_PYTIN)

HSP 1 Score: 64.3 bits (155), Expect = 6.100e-11
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            LR   AE++KNPPEGVSVGL +D+N+F WE+L+VGPPDT+
Sbjct:  426 LRRGEAEMSKNPPEGVSVGLGDDENIFHWEILLVGPPDTL 465
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A024UPR9_9STRA (UBC core domain-containing protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UPR9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.540e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            LR    EL++NPPEGVSVGL +D+N+F WE+++VGPPDT+
Sbjct:    8 LRRQFTELSRNPPEGVSVGLGDDENLFNWEIMLVGPPDTL 47
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A067CW50_SAPPC (UBC core domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW50_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 1.540e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            LR    EL++NPPEGVSVGL +D+N+F WE+++VGPPDT+
Sbjct:    8 LRRQLTELSRNPPEGVSVGLGDDENIFHWEIMLVGPPDTL 47
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A7S0XFZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XFZ8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.570e-10
Identity = 24/34 (70.59%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   19 ELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            +L++NPP+GVSVGL EDDN+F WE++IVGPPDT+
Sbjct:   21 DLSRNPPDGVSVGLREDDNIFHWEVMIVGPPDTL 54
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A8K1CH94_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH94_PYTOL)

HSP 1 Score: 60.8 bits (146), Expect = 2.250e-10
Identity = 23/34 (67.65%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   19 ELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            E++KNPPEGVSVGL +D+N+F WE+L++GPPDT+
Sbjct:   16 EMSKNPPEGVSVGLGDDENIFRWEILLIGPPDTL 49
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BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Match: A0A5D6XWX1_9STRA (UBC core domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWX1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.370e-10
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV 120
            LR    E+++NPPEGVSVGL +D+N+F WE+++VGPPDT+
Sbjct:   10 LRRQFLEMSRNPPEGVSVGLGDDENIFNWEIMLVGPPDTL 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57333.13200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV8_ECTSI6.520e-1388.24UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A067BQS6_SAPPC1.400e-1162.50UBC core domain-containing protein n=1 Tax=Saprole... [more]
A0A662Y7G3_9STRA3.860e-1162.50UBC core domain-containing protein (Fragment) n=2 ... [more]
A0A836CP86_9STRA5.630e-1176.47Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A2D4BQ33_PYTIN6.100e-1167.50UBC core domain-containing protein n=1 Tax=Pythium... [more]
A0A024UPR9_9STRA1.540e-1062.50UBC core domain-containing protein n=7 Tax=Saprole... [more]
A0A067CW50_SAPPC1.540e-1062.50UBC core domain-containing protein n=3 Tax=Saprole... [more]
A0A7S0XFZ8_9STRA1.570e-1070.59Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A8K1CH94_PYTOL2.250e-1067.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XWX1_9STRA6.370e-1060.00UBC core domain-containing protein n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57333contigH-elongata_contig57333:2812..2931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D8LCV8
KEGG koko:K10575
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0425@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.3768783-CDS-H-elongata_contig57333:2811..29311622930932.3768783-CDS-H-elongata_contig57333:2811..2931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57333 2812..2931 +
1691679630.138267-CDS-H-elongata_contig57333:2811..29311691679630.138267-CDS-H-elongata_contig57333:2811..2931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57333 2812..2931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57333.13200.1prot_H-elongata_contig57333.13200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57333 2812..2931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57333.13200.1

>prot_H-elongata_contig57333.13200.1 ID=prot_H-elongata_contig57333.13200.1|Name=mRNA_H-elongata_contig57333.13200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
LRPPGAELNKNPPEGVSVGLAEDDNMFFWELLIVGPPDTV
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mRNA from alignment at H-elongata_contig57333:2812..2931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57333.13200.1 ID=mRNA_H-elongata_contig57333.13200.1|Name=mRNA_H-elongata_contig57333.13200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig57333:2812..2931+ (Himanthalia elongata Himel1 dioecious)
CTCCGCCCCCCTGGAGCAGAGCTGAACAAGAACCCTCCTGAAGGAGTCTC
GGTTGGGCTGGCCGAAGACGACAACATGTTCTTTTGGGAACTGCTCATCG
TTGGGCCACCAGACACGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig57333:2812..2931+

>mRNA_H-elongata_contig57333.13200.1 ID=mRNA_H-elongata_contig57333.13200.1|Name=mRNA_H-elongata_contig57333.13200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig57333:2812..2931+ (Himanthalia elongata Himel1 dioecious)
CTCCGCCCCCCTGGAGCAGAGCTGAACAAGAACCCTCCTGAAGGAGTCTC
GGTTGGGCTGGCCGAAGACGACAACATGTTCTTTTGGGAACTGCTCATCG
TTGGGCCACCAGACACGGTACTCCGCCCCCCTGGAGCAGAGCTGAACAAG
AACCCTCCTGAAGGAGTCTCGGTTGGGCTGGCCGAAGACGACAACATGTT
CTTTTGGGAACTGCTCATCGTTGGGCCACCAGACACGGTA
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