mRNA_H-elongata_contig57292.13195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57292.13195.1
Unique NamemRNA_H-elongata_contig57292.13195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A6H5KC18_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC18_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.210e-31
Identity = 57/80 (71.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GH +MSLP+T++AARE+D+VGVFRYR+AYP AIHL+ SGAI+VQPLITHRFSLA +F+  TI++GF+VSA GG+AIKV
Sbjct:  276 GMGHIMMSLPITASAAREVDLVGVFRYRDAYPTAIHLVGSGAIDVQPLITHRFSLATNFTSDTINEGFKVSARGGDAIKV 355          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A9NJU4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NJU4_PICSI)

HSP 1 Score: 98.6 bits (244), Expect = 5.270e-25
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GHN M++P+T AAARE+D+ GVFRYRN +P  +  +SSG ++V+PLITHRF     FS   + + FE SAGGGNAIKV
Sbjct:   18 GMGHNEMTVPLTPAAAREVDIFGVFRYRNTWPLCLEFLSSGKVDVKPLITHRFG----FSQKEVEEAFETSAGGGNAIKV 93          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A836CMG9_9STRA (Sorbitol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.290e-24
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 FGQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKVQS 249
             G GH  M+LP+T++AARE+D++GVFRYRNAYP AI LIS   I+VQPLIT+RF+L   FS   I +GFEVSA G NAIK  +
Sbjct:  274 IGMGHGEMTLPLTASAAREVDILGVFRYRNAYPLAIDLISKRHIDVQPLITNRFNLVGGFSQEVIKEGFEVSAKGRNAIKADA 356          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A7J9JMI8_9ROSI (ADH_zinc_N domain-containing protein (Fragment) n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9JMI8_9ROSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.850e-24
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GHN M++P+T AAARE+DV+GVFRY+N +P  I L+ SG I+V+PLITHRF     FS   I + FE SAGGGNAIKV
Sbjct:  144 GLGHNEMTVPLTPAAAREVDVIGVFRYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNAIKV 219          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A7J8MHQ3_9ROSI (ADH_zinc_N domain-containing protein n=5 Tax=Gossypium TaxID=3633 RepID=A0A7J8MHQ3_9ROSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.840e-24
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GHN M++P+T AAARE+DV+GVFRY+N +P  I L+ SG I+V+PLITHRF     FS   I + FE SAGGGNAIKV
Sbjct:  160 GLGHNEMTVPLTPAAAREVDVIGVFRYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNAIKV 235          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A5J5TFM0_GOSBA (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A5J5TFM0_GOSBA)

HSP 1 Score: 99.8 bits (247), Expect = 1.810e-23
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GHN M++P+T AAARE+DV+GVFRY+N +P  I L+ SG I+V+PLITHRF     FS   I + FE SAGGGNAIKV
Sbjct:  211 GLGHNEMTVPLTPAAAREVDVIGVFRYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNAIKV 286          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A7J9EKX6_9ROSI (ADH_zinc_N domain-containing protein (Fragment) n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9EKX6_9ROSI)

HSP 1 Score: 95.1 bits (235), Expect = 9.710e-23
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GHN M++P+T AAARE+DV+GVF Y+N +P  I L+ SG I+V+PLITHRF     FS   I + FE SAGGGN IKV
Sbjct:   95 GLGHNEMTVPLTPAAAREVDVIGVFWYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNVIKV 170          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A5B6UQA3_9ROSI (Sorbitol dehydrogenase n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UQA3_9ROSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.060e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GH+ M+LP+T AAARE+DV+G+FRYRN +P  I  + SG I+V+PLITHRF     FS   + + FE SAGGG+AIKV
Sbjct:  160 GMGHHEMTLPLTPAAAREVDVIGIFRYRNTWPLCIEFLRSGKIDVKPLITHRFG----FSQKEVEEAFETSAGGGSAIKV 235          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A6A2YSQ4_HIBSY (GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YSQ4_HIBSY)

HSP 1 Score: 97.8 bits (242), Expect = 1.250e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
            G GHN M++P+T AAARE+DV+G+FRYRN +P  I  + SG I+V+PLITHRF     FS   + + FE SAGGGN IKV
Sbjct:  226 GMGHNEMTVPLTPAAAREVDVIGIFRYRNTWPLCIEFLRSGKIDVKPLITHRFG----FSQKEVEEAFETSAGGGNTIKV 301          
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A1S3AYN0_CUCME (sorbitol dehydrogenase-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3AYN0_CUCME)

HSP 1 Score: 97.8 bits (242), Expect = 1.430e-22
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 FGQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
             G GHN M++P+T AAARE+D++GVFRY+N +P  +  ISSG I+V+PLITHRF     FS   + + FE SA GGNAIKV
Sbjct:  234 IGMGHNEMTVPLTPAAAREVDIIGVFRYKNTWPVCLEFISSGKIDVKPLITHRFG----FSQKEVEEAFETSARGGNAIKV 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC18_9PHAE4.210e-3171.25PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
A9NJU4_PICSI5.270e-2557.50Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A836CMG9_9STRA1.290e-2461.45Sorbitol dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7J9JMI8_9ROSI4.850e-2461.25ADH_zinc_N domain-containing protein (Fragment) n=... [more]
A0A7J8MHQ3_9ROSI6.840e-2461.25ADH_zinc_N domain-containing protein n=5 Tax=Gossy... [more]
A0A5J5TFM0_GOSBA1.810e-2361.25Uncharacterized protein n=3 Tax=Gossypium TaxID=36... [more]
A0A7J9EKX6_9ROSI9.710e-2358.75ADH_zinc_N domain-containing protein (Fragment) n=... [more]
A0A5B6UQA3_9ROSI1.060e-2257.50Sorbitol dehydrogenase n=1 Tax=Gossypium australe ... [more]
A0A6A2YSQ4_HIBSY1.250e-2257.50GroES-like zinc-binding alcohol dehydrogenase fami... [more]
A0A1S3AYN0_CUCME1.430e-2256.79sorbitol dehydrogenase-like n=1 Tax=Cucumis melo T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57292contigH-elongata_contig57292:2822..3683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D7FK11
KEGG rclassRC00085,RC00102
KEGG koko:K00008,ko:K19635
KEGG ReactionR00875,R01896
KEGG Pathwayko00040,ko00051,ko01100,map00040,map00051,map01100
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003939,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005911,GO:0008150,GO:0008152,GO:0009506,GO:0016491,GO:0016614,GO:0016616,GO:0030054,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0055114
EggNOG free text desc.L-arabinose catabolic process
EggNOG OGsCOG1063@1,KOG0024@2759
EC1.1.1.14,1.1.1.366
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57292.13195.1prot_H-elongata_contig57292.13195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57292 2822..3662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.6882586-CDS-H-elongata_contig57292:2821..29691622930931.6882586-CDS-H-elongata_contig57292:2821..2969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57292 2822..2969 -
1691679629.8568704-CDS-H-elongata_contig57292:2821..29691691679629.8568704-CDS-H-elongata_contig57292:2821..2969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57292 2822..2969 -
1622930931.7043312-CDS-H-elongata_contig57292:3558..36621622930931.7043312-CDS-H-elongata_contig57292:3558..3662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57292 3559..3662 -
1691679629.8705897-CDS-H-elongata_contig57292:3558..36621691679629.8705897-CDS-H-elongata_contig57292:3558..3662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57292 3559..3662 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.719988-UTR-H-elongata_contig57292:3662..36831622930931.719988-UTR-H-elongata_contig57292:3662..3683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57292 3663..3683 -
1691679629.8786383-UTR-H-elongata_contig57292:3662..36831691679629.8786383-UTR-H-elongata_contig57292:3662..3683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57292 3663..3683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57292.13195.1

>prot_H-elongata_contig57292.13195.1 ID=prot_H-elongata_contig57292.13195.1|Name=mRNA_H-elongata_contig57292.13195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLA
EDFSPATISKGFEVSAGGGNAIKVQSVLMYLYL*
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mRNA from alignment at H-elongata_contig57292:2822..3683-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57292.13195.1 ID=mRNA_H-elongata_contig57292.13195.1|Name=mRNA_H-elongata_contig57292.13195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=862bp|location=Sequence derived from alignment at H-elongata_contig57292:2822..3683- (Himanthalia elongata Himel1 dioecious)
TTCGGTCAGGGCCACAATATCATGAGCTTGCCAGTGACGTCGGCGGCAGC ACGAGAAATCGACGTGGTCGGTGTCTTCCGCTACAGGAACGCCTATCCCG CCGCAATCCATCTCATCTCTTCGGGGTAAGGCCGGCCTCTTTCCTGACTG ACTATTGCGTCCCTCCTCCAAAGAATTCGCCACACGCTTCTCGCCCGTCC GACCACAGCTTTGTTGCCGATATTTGTTGATGTCACTATTACGAAGACGA CGAAGACGAAGACGCTCGACAGAGCAGGTCACCTCCCCCCCAAAACTGTC TTTTGGCGCGATCAGATTGACACTCTTCCTTTCATCACACATTTTGCGTG CAGTAGTTGTCCGATACTTCGATTCAGTACGCCATGCGCATTCATCTAGC ATCAAATTCGCTCCCTCTCCCGCCCCCACTCCATACATCGCGCCCCCCTC CTCCGCCCTCCTACCAGCCTACTACTTTTTTCCGGTCCAGGCGCGCAGAA AGAGATGTGTTGATGCCCCTCCCCCTTCCTCCCTTCATTTGAATAAGCAC CGCATTCTTGGTAGTTATCTTCCCGCCCGGGCGTGACGTCACCAAAATCT CCCTCCAGCGGCGCTGATCCTTATCTTGATTCGTGTTCCTCCTCGTGCGG CATACCGATCCCTCCCGCGCTCGATCGATCTTTGACCCCGATGATCCGCC GCCTCGCCGCGCAGCGCCATCAACGTACAGCCGCTCATCACGCACCGCTT CAGCCTGGCGGAAGATTTCAGCCCCGCCACGATCAGCAAAGGCTTCGAGG TGTCGGCCGGCGGTGGAAACGCTATCAAGGTTCAGTCCGTTTTAATGTAT TTGTATCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig57292:2822..3683-

>mRNA_H-elongata_contig57292.13195.1 ID=mRNA_H-elongata_contig57292.13195.1|Name=mRNA_H-elongata_contig57292.13195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig57292:2822..3683- (Himanthalia elongata Himel1 dioecious)
ATGAGCTTGCCAGTGACGTCGGCGGCAGCACGAGAAATCGACGTGGTCGG
TGTCTTCCGCTACAGGAACGCCTATCCCGCCGCAATCCATCTCATCTCTT
CGGGATGAGCTTGCCAGTGACGTCGGCGGCAGCACGAGAAATCGACGTGG
TCGGTGTCTTCCGCTACAGGAACGCCTATCCCGCCGCAATCCATCTCATC
TCTTCGGGCGCCATCAACGTACAGCCGCTCATCACGCACCGCTTCAGCCT
GGCGGAAGATTTCAGCCCCGCCACGATCAGCAAAGGCTTCGAGGTGTCGG
CCGGCGGTGGAAACGCTATCAAGGTTCAGTCCGTTTTAATGTATTTGTAT
CTGTGACGCCATCAACGTACAGCCGCTCATCACGCACCGCTTCAGCCTGG
CGGAAGATTTCAGCCCCGCCACGATCAGCAAAGGCTTCGAGGTGTCGGCC
GGCGGTGGAAACGCTATCAAGGTTCAGTCCGTTTTAATGTATTTGTATCT
GTGA
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