mRNA_H-elongata_contig57232.13186.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE) HSP 1 Score: 232 bits (592), Expect = 4.970e-69 Identity = 119/186 (63.98%), Postives = 144/186 (77.42%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
PG + DPQI IIF PPNV V+ P D GIL ALK QYK EM+ARL++LI WD V AR IRRG +GLNDA QATMLDV EILS+K E+F Q+VIRCWLK +ILPRE NALK KD LDREDKEDTAII+++C++V+KM++PAS D+RS RVLTD LF EK GLTDA++R+A++T+ V
Sbjct: 251 PGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMVSKMSMPASATDSRSTARVLTDNLFVEKASGLTDAEVRQAVKTWLSV 436
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE) HSP 1 Score: 232 bits (592), Expect = 6.860e-68 Identity = 119/186 (63.98%), Postives = 144/186 (77.42%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
PG + DPQI IIF PPNV V+ P D GIL ALK QYK EM+ARL++LI WD V AR IRRG +GLNDA QATMLDV EILS+K E+F Q+VIRCWLK +ILPRE NALK KD LDREDKEDTAII+++C++V+KM++PAS D+RS RVLTD LF EK GLTDA++R+A++T+ V
Sbjct: 456 PGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMVSKMSMPASATDSRSTARVLTDNLFVEKASGLTDAEVRQAVKTWLSV 641
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE) HSP 1 Score: 218 bits (555), Expect = 3.310e-63 Identity = 112/186 (60.22%), Postives = 135/186 (72.58%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
PG + DPQI IIF PPNV VY P + GIL LK QYK EM+ARL++LI+DWDTV AR I+RG +GL+DA QATMLDV EI SQK +F Q+VIRCWLK ILPRE LK D LDREDK+D AII+ +CD+ KM++PASV D RSMPRVLTD LF EK LT+ ++R A++T+ V
Sbjct: 288 PGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLKCQYKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCKVLKGMDTRLDREDKDDAAIIDGLCDMATKMSMPASVTDCRSMPRVLTDNLFVEKGTDLTEQEVRTAVKTWLTV 473
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE) HSP 1 Score: 209 bits (533), Expect = 2.840e-62 Identity = 108/186 (58.06%), Postives = 132/186 (70.97%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
PG + DPQI IIF PP + VY P D GIL LK +YK EM+ARL++LI+DWDTV AR +RG QGL+DA QATMLDV EI SQK +F Q+VI CWLK ILPRE N LK D +DREDK+D AII+ +CD+V+KM +PASV RSMPRVLTD L EK LT+ ++R A++T+ V
Sbjct: 85 PGHKIKSNDPQIVIIFLPPEITSVYQPMDMGILFVLKCRYKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILPREHCNVLKGMDTRVDREDKDDAAIIDGLCDMVSKMAMPASVTGYRSMPRVLTDNLLVEKGTDLTEQEVRTAVKTWLTV 270
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.680e-51 Identity = 106/191 (55.50%), Postives = 129/191 (67.54%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASV--MDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLVLSK 634
PG + DPQI IIF PPNV V+ P D GIL ALK QYK EM+ RL+ LI+DWDT AR IR G +GLNDA Q TMLDV E+LSQK E+F DQ+VIRCWLK I P E +ALK+ D LDRED TA+ +++CD+V KM++P S +DARS PRVLTD + GL DA ++ T VLS+
Sbjct: 174 PGHRIKNDDPQIVIIFLPPNVMSVFQPMDMGILFALKCQYKTEMVMRLAALIEDWDTARARQIRTGCRGLNDAGQPTMLDVTEVLSQKWESFSDQTVIRCWLKATIRPGEHESALKDNDTRLDREDPGATAL-DDLCDMVEKMSMPESAKDLDARSKPRVLTDNMGCR---GLNDAGQPTMLDV-TEVLSQ 359
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE) HSP 1 Score: 178 bits (451), Expect = 5.000e-51 Identity = 92/158 (58.23%), Postives = 116/158 (73.42%), Query Frame = 2
Query: 152 DQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
D GIL L QYK EM+ RL++LI+DWDTV AR I+ +GLNDA QATMLDV EI SQK +F Q+VIRCWLK ILPRE N LK D LDREDK++ AI++ +CD+V+KM++PASV D+RSM R LTD LF EK LT+ ++R A++T+ V
Sbjct: 2 DMGILFVLMCQYKTEMVERLADLIEDWDTVRARKIQGECRGLNDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKCMDTRLDREDKDNVAIVDGLCDMVSKMSMPASVTDSRSMLRGLTDDLFVEKGTDLTEQEVRTAVKTWLTV 159
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE) HSP 1 Score: 186 bits (473), Expect = 9.420e-50 Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 2
Query: 152 DQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
D IL LK QYK EM+ARL++L++DWDTV AR I+RG GL+DA QATMLDV EI SQK +F Q+ IRCWLK ILPRE N LK D LDREDK+D AII+ +CD+V+ M++PASVMD RSMPRVLTD LF EK LT+ +R A++T+ V
Sbjct: 2 DMAILFVLKCQYKTEMLARLADLVEDWDTVRARKIQRGCWGLSDARQATMLDVTEIYSQKWRSFDVQTGIRCWLKAGILPREHCNVLKGMDTWLDREDKDDAAIIDGLCDMVSNMSMPASVMDYRSMPRVLTDNLFVEKGTDLTEQVVRTAVKTWLTV 159
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5KSV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV5_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.220e-47 Identity = 90/158 (56.96%), Postives = 112/158 (70.89%), Query Frame = 2
Query: 158 GILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASV--MDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
GIL ALK QYK EM+ RL+ LI+DWDT A IRRGY+GLNDA Q TMLDV EI SQK E+ DQ+VIRCWLK ILP E +ALK+KD LD+ED A ++++CD+V KM++ S +DARS PRVLT+ LF E GLT ++R A+ T+ V
Sbjct: 4 GILFALKCQYKTEMVMRLAALIEDWDTARALKIRRGYRGLNDAGQPTMLDVTEIPSQKWESVSDQTVIRCWLKATILPGEHESALKDKDTRLDQEDP-GAASLDDLCDMVEKMSMAESAKDLDARSQPRVLTENLFVESASGLTGEEVRSAMRTWLSV 160
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE) HSP 1 Score: 175 bits (443), Expect = 4.690e-47 Identity = 90/151 (59.60%), Postives = 107/151 (70.86%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMD 520
PG DPQI I+F PPNV VY P D GIL LK QY+ E MARL++LI+DWDTV AR I+RG QG +DA QAT+LDV EI SQK +F Q+VIRCWLK ILP E N K D LDREDK D AII+ +CD+V+KM++PAS+ D
Sbjct: 424 PGHKINSNDPQIFIMFLPPNVISVYQPMDMGILFVLKCQYRNEKMARLADLIEDWDTVRARKIQRGCQGFSDAGQATVLDVTEICSQKWRSFDVQTVIRCWLKAGILPTEHCNVPKGMDTRLDREDKGDVAIIDGLCDMVSKMSMPASITD 574
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Match: A0A6H5K0Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y4_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.440e-46 Identity = 96/186 (51.61%), Postives = 118/186 (63.44%), Query Frame = 2
Query: 68 PGPHHQKQDPQITIIFSPPNVPFVYHPCDQGILHALKGQYKAEMMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPDQSVIRCWLKDDILPREDVNALKNKDPPLDREDKEDTAIIENICDIVAKMTIPASVMDARSMPRVLTDILFAEKQPGLTDAQMREAIETFTLV 625
PG + DP I I F PP V VY P D IL LK QYK EM+ARL++L++DWDT ATMLDV EI SQK +F Q+VIRCWLK ILPRE N LK D LDREDK++ AII+ +CD+V+KM++PASV D SMPRVLTD LF E LT+ ++R A++T+ V
Sbjct: 365 PGHKIKSNDPHIVINFLPPYVNSVYQPMDMSILFVLKCQYKTEMVARLADLMEDWDT------------------ATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKGMDTRLDREDKDNAAIIDGLCDMVSKMSMPASVTDHGSMPRVLTDNLFVETGADLTEQEVRTAVKTWLSV 532 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57232.13186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57232.13186.1 >prot_H-elongata_contig57232.13186.1 ID=prot_H-elongata_contig57232.13186.1|Name=mRNA_H-elongata_contig57232.13186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp MMARLSELIKDWDTVLARNIRRGYQGLNDADQATMLDVAEILSQKGENFPback to top mRNA from alignment at H-elongata_contig57232:1515..2806+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57232.13186.1 ID=mRNA_H-elongata_contig57232.13186.1|Name=mRNA_H-elongata_contig57232.13186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig57232:1515..2806+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57232:1515..2806+ >mRNA_H-elongata_contig57232.13186.1 ID=mRNA_H-elongata_contig57232.13186.1|Name=mRNA_H-elongata_contig57232.13186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig57232:1515..2806+ (Himanthalia elongata Himel1 dioecious)back to top |