prot_H-elongata_contig11685.1318.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11685.1318.1
Unique Nameprot_H-elongata_contig11685.1318.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length226
Homology
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.880e-47
Identity = 91/234 (38.89%), Postives = 138/234 (58.97%), Query Frame = 0
Query:    5 IVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            +V VPG+G NLFSV  A   G+ ++F  +N RLE  +  VP++ +    +G +  S  + L  +  G +        LA+     D +WHRR+GH++ +SLD+LR++  +GI +   V DC  C +GK     HPK A + ++ PFQL + D +GPFTP A+G +KY ++  D++TKW  V L+  K  ++ +L+LF   T+IP   RI   RADKG E+T   +RQYCL+  I
Sbjct:  489 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 721          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.700e-47
Identity = 90/234 (38.46%), Postives = 138/234 (58.97%), Query Frame = 0
Query:    5 IVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            ++ VPG+G NLFSV  A   G+ ++F  +N RLE  +  VP++ +    +G +  S  + L  +  G +        LA+     D +WHRR+GH++ +SLD+LR++  +GI +   V DC  C +GK     HPK A + ++ PFQL + D +GPFTP A+G +KY ++  D++TKW  V L+  K  ++ +L+LF   T+IP   RI   RADKG E+T   +RQYCL+  I
Sbjct:  489 VMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 721          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 4.350e-46
Identity = 89/231 (38.53%), Postives = 135/231 (58.44%), Query Frame = 0
Query:    8 VPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            VPG+G NLFSV  A   G+ ++F  +N RLE  +  VP++ +    +G +  S  + L  +  G +        L +     D +WHRR+GH++ +SLD+LR++  +GI +   V DC  C +GK     HPK A + ++ PFQL + D +GPFTP A+G +KY ++  D++TKW  V L+  K  ++ +L+LF   T+IP   RI   RADKG E+T   +RQYCL+  I
Sbjct:  614 VPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 843          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.510e-42
Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 0
Query:   12 GRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRS------ESGNLYSFVLDL-------SVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            G NLFSV  A  KG+ T+F  +N RLE  +V  P+++          +YS  + L       +V G     LA+  V +  +WHRR+GH++ +SLD+LRK    G+ +   V+DC VC +GK     HPK   + + RPFQ    D +GPFTP A+G +KY ++  D+ TKW  + L+  +  ++ SL LF   T++P G RI   R D G E+T  EFRQYC +  I
Sbjct:  208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALK-VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGI 434          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.720e-40
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 0
Query:   49 ESGNLYSFVLDLSVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            E   LY F +DL   G     +A+  V +  +WHRR+GH+H +SLDILRK  G G+ +   +S C VCAVG  +  +HPK A++  +RPFQL   DLMGPF+P A+G + Y+ +  D++ KW  V+L+  K   + +LQLF  S + P   R+   RADKGGEYT   F +YC +  I
Sbjct:  239 ECDELYHFTMDLPETGE-ISGVAL-PVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGI 414          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.140e-38
Identity = 89/240 (37.08%), Postives = 124/240 (51.67%), Query Frame = 0
Query:    8 VPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSESGNLYSFVLDLS----VDGYGAKKLA----------MNAV----VNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            VPG+GRN+FS  +  K+G+  + +     L      +PL  +  +     LD++    V   G K L            NAV    V+   WHRRLGHL+A+SLDILRK  GT + + +++S CGVC + K +   HPK +  +++RP QL   D MGP  P A    G + Y  ++TD+YTK   VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I
Sbjct:  278 VPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 517          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 8.580e-38
Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 0
Query:    8 VPGIGRNLFSVITAAKKGIVTIFDFENFRLE-------GFNVTVPLRSESGNLYSFVLDLSVDGYGAKKLA------MNAVVNDQV----------WHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYC 221
            VPG+GR+LFS  TA KKG  TI   +  R+E       G  + + LR E G LY   LD+ +D    ++        MN   N  V          WHRRL H H   ++   +   TG+   + +  C  C + K     HPKTA H   +P Q  Y DL+GP +P A G + YVS+ TDEY++   VYL+ TKD+A+ +L+ F+   +IP G R+ R R+D GGEYT E + ++C
Sbjct:  379 VPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLY--FLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFC 611          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.250e-37
Identity = 94/251 (37.45%), Postives = 126/251 (50.20%), Query Frame = 0
Query:    8 VPGIGRNLFSVITAA-----------KKGIVTIFDFENFRLEGFNVTVPLRSESGNLYSFVLDLS----VDGYGAKKLA----------MNAV----VNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            VPG+GRN+FS  T             KKG+  + +     L   +  +PL  +  +     LD++    V   G K L            NAV    V+   WHRRLGHL+A+SLDILRK  GTG+ + +++S CGVC + K +   HPK +  +I+RP QL   D MGP  P A    G + Y  +ITD+YTK   VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I
Sbjct:  319 VPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 569          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 7.360e-37
Identity = 68/152 (44.74%), Postives = 94/152 (61.84%), Query Frame = 0
Query:   75 VVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            V +  +WHRR+GH++++SLDILRK    G+   E V DCG CA+GK     HPK A + + RPFQL + D +GPFTP A+G +KY ++  D+ TKW  + L+  K  ++ SL LF   T++P G  I   R D G E+T  EFRQY  +  I
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGI 674          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.140e-36
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 0
Query:   75 VVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 226
            +V+   WHRRLGHL+A+SLDILRK  GTG+ + +++S CGVC + K +   HPK +  +++RP QL   D MGP  P A    G + Y  +ITD+YTK   VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.880e-4738.89Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE3.700e-4738.46Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.350e-4638.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM1_9PHAE2.510e-4238.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1J1_9PHAE3.720e-4043.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE6.140e-3837.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE8.580e-3837.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE2.250e-3737.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE7.360e-3744.74Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KZ34_9PHAE2.140e-3644.52Integrase catalytic domain-containing protein n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 127..226
e-value: 2.0E-11
score: 45.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..226
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 9..226
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 133..226
score: 11.666
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 132..226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11685contigH-elongata_contig11685:8123..8800 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11685.1318.1mRNA_H-elongata_contig11685.1318.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11685 8123..8800 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11685.1318.1 ID=prot_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
VWIDIVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSES
GNLYSFVLDLSVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRY
GTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFT
PVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGR
IVRWRADKGGEYTGEEFRQYCLETDI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf