mRNA_H-elongata_contig57217.13182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57217.13182.1
Unique NamemRNA_H-elongata_contig57217.13182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57217.13182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57217contigH-elongata_contig57217:1043..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size350
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.8837786-CDS-H-elongata_contig57217:1042..13691622930929.8837786-CDS-H-elongata_contig57217:1042..1369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57217 1043..1369 +
1691679629.0813544-CDS-H-elongata_contig57217:1042..13691691679629.0813544-CDS-H-elongata_contig57217:1042..1369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57217 1043..1369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.9136782-UTR-H-elongata_contig57217:1369..13901622930929.9136782-UTR-H-elongata_contig57217:1369..1390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57217 1370..1390 +
1691679629.0915718-UTR-H-elongata_contig57217:1369..13901691679629.0915718-UTR-H-elongata_contig57217:1369..1390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57217 1370..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57217.13182.1prot_H-elongata_contig57217.13182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57217 1043..1369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57217.13182.1

>prot_H-elongata_contig57217.13182.1 ID=prot_H-elongata_contig57217.13182.1|Name=mRNA_H-elongata_contig57217.13182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
ILLLKVRSYTFIDFLSNARRRHTRHLLNYIELYIPDTYLYTYKKRVLGLT
LPVSQIPPRVSTKTLSHDFLPRANVGGKNTHTHTHILRRTPSKTMNNNTC
SCLLLMVS*
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mRNA from alignment at H-elongata_contig57217:1043..1390+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57217.13182.1 ID=mRNA_H-elongata_contig57217.13182.1|Name=mRNA_H-elongata_contig57217.13182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig57217:1043..1390+ (Himanthalia elongata Himel1 dioecious)
ATTCTTCTGCTAAAAGTGCGATCATACACATTTATTGATTTTTTAAGCAA
TGCCCGCAGAAGACATACCAGGCATCTTCTTAACTATATAGAGCTATATA
TACCAGATACATACTTATATACATACAAAAAAAGAGTACTAGGGCTTACG
CTCCCAGTCTCCCAAATTCCTCCTCGGGTTTCCACTAAAACATTATCCCA
TGATTTTTTACCTCGAGCAAACGTTGGGGGAAAAAACACACACACACACA
CACACATTTTGAGGAGAACGCCAAGTAAGACCATGAACAATAATACATGT
AGTTGCCTCCTGCTTATGGTCAGCTGAACAGGGAAGCATAATTTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig57217:1043..1390+

>mRNA_H-elongata_contig57217.13182.1 ID=mRNA_H-elongata_contig57217.13182.1|Name=mRNA_H-elongata_contig57217.13182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig57217:1043..1390+ (Himanthalia elongata Himel1 dioecious)
ATTCTTCTGCTAAAAGTGCGATCATACACATTTATTGATTTTTTAAGCAA
TGCCCGCAGAAGACATACCAGGCATCTTCTTAACTATATAGAGCTATATA
TACCAGATACATACTTATATACATACAAAAAAAGAGTACTAGGGCTTACG
CTCCCAGTCTCCCAAATTCCTCCTCGGGTTTCCACTAAAACATTATCCCA
TGATTTTTTACCTCGAGCAAACGTTGGGGGAAAAAACACACACACACACA
CACACATTTTGAGGAGAACGCCAAGTAAGACCATGAACAATAATACATGT
AGTTGCCTCCTGCTTATGGTCAGCTGAATTCTTCTGCTAAAAGTGCGATC
ATACACATTTATTGATTTTTTAAGCAATGCCCGCAGAAGACATACCAGGC
ATCTTCTTAACTATATAGAGCTATATATACCAGATACATACTTATATACA
TACAAAAAAAGAGTACTAGGGCTTACGCTCCCAGTCTCCCAAATTCCTCC
TCGGGTTTCCACTAAAACATTATCCCATGATTTTTTACCTCGAGCAAACG
TTGGGGGAAAAAACACACACACACACACACACATTTTGAGGAGAACGCCA
AGTAAGACCATGAACAATAATACATGTAGTTGCCTCCTGCTTATGGTCAG
CTGA
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