mRNA_H-elongata_contig57214.13181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57214.13181.1
Unique NamemRNA_H-elongata_contig57214.13181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 216 bits (550), Expect = 3.010e-61
Identity = 121/329 (36.78%), Postives = 187/329 (56.84%), Query Frame = 1
Query:   46 VWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAG---GKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            VW++VE P+G   +G + VFK K D++G IE+YK  LVA+GF Q +GI Y+E+ SP   + S+R++++++A    E  Q+D   A+L  ++EEE+++  PE +    K+  V  LKK++YGL  A   W   F   + + GF+ + VD C++ ++  G            +L+AS+      +    L   F +KD+GE SY +G  I RDR+ G L   Q  YI+ + ERFG+ K S  PS+A    G   S    PQ + E + M +IPY   VG+L++A T TRPDISF    L ++  N G  HW+  +K ++YL  T++  +TY
Sbjct:   48 VWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCS--PSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY 373          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A5BAP9_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BAP9_VITVI)

HSP 1 Score: 220 bits (560), Expect = 1.500e-60
Identity = 129/343 (37.61%), Postives = 189/343 (55.10%), Query Frame = 1
Query:    1 KIAIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV--TKTSIIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            K A+  +M+     GVW +VE P G   +G + VFK K D+  +IE+YK  LV +G+ Q +GI ++E+ SP   + S R++++++A    E  Q+D   A+L  D++EE+Y+E P  + +  K+  V  L K++YGL  A   W   F   +   GF+ + VD C++ R+  G            +L+AS       +    L + F +KDLGETSY LG  I RDR  G L   Q  YI+ + +RF +   K++  P V G K  SK   PQ D E EEM  IPY  +VG+LM+A   TRPDI+F    L +   N G  HW+ A+K L+YL  T+DL +TY
Sbjct:  402 KEAMNDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKCDSSWKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYIEQPTGFVEIGKEDLVCKLNKSIYGLKQASRQWYLKFDRIITQNGFKENTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDPDLLIEIKHMLSTHFDMKDLGETSYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKSTKAPIVKGHK-FSKAQCPQNDDEREEMRTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRSLSNLGSQHWKAAKKVLRYLQRTKDLMLTY 742          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A438CL20_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CL20_VITVI)

HSP 1 Score: 221 bits (564), Expect = 2.840e-60
Identity = 129/343 (37.61%), Postives = 190/343 (55.39%), Query Frame = 1
Query:    1 KIAIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV--TKTSIIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            K A+  +M+     GVW +VE P G   +G + VFK K D+ G+IE+YK  LV +G+ Q +GI ++E+ SP   + S R++++++A    E  Q+D   A+L  D++EE+Y+E P  + +  K+  V  L K++YGL  A   W   F   +   GF+ + VD C++ R+  G            +L+AS       +    L + F +KDLGE SY LG  I RDR  G L   Q  YI+ + +RF +   K++  P V G K  SK   PQ D E EEM  IPY  +VG+LM+A   TRPDI+F    L ++  N G  HW+ A+K L+YL  T+DL +TY
Sbjct:  789 KEAMDDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQASRQWYLKFDKIITQNGFKENTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDK-FSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTY 1129          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A1J3K4I8_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K4I8_NOCCA)

HSP 1 Score: 220 bits (560), Expect = 1.130e-59
Identity = 125/336 (37.20%), Postives = 183/336 (54.46%), Query Frame = 1
Query:   22 MDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTK--TSIIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            +D     GVW +V  P+G   +G + +FK KLD +G +E+YK  LVA+GF Q +GI Y E+ SP   + S+R++L+++A    E  Q+D   A+L  D+EEE+Y+  PE +    ++  V  LKK++YGL  A   W   F   +   GF+ + VDPC++ +   G            +L+AS+      Q    L   F +KD+GE SY +G  I RDR+ G L   Q  YI  + ERF +    +S++P   G K L     PQ + E  EM + PY  +VG+LM+A   TRPDIS     L +F  N G  HW+ A+K L+YL  TR+  +TY
Sbjct:  841 IDSMVKNGVWDIVPLPEGHKAVGCKWIFKTKLDCNGNVERYKARLVAKGFNQKEGIDYCETFSPVSRKDSLRIILALVAQYDLELHQMDVKTAFLNGDLEEEVYMRQPEGFIIEGQEDMVCKLKKSIYGLKQASRQWYLKFDEIITNFGFKENIVDPCIYLKF-SGSKFIFLVLYVDDILLASSDLGLLHQTKNYLSKNFDMKDMGEASYVIGIEIFRDRSLGILGLSQKAYIDRVLERFSMLSCSSSVVPMQKGDK-LDLKQCPQNEMERNEMQKYPYASLVGSLMYAQVCTRPDISHAVGMLGRFQSNPGIVHWQAAKKVLRYLKGTRNHMLTY 1174          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A251UJK4_HELAN (Putative zinc finger, CCHC-type n=7 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJK4_HELAN)

HSP 1 Score: 219 bits (559), Expect = 1.350e-59
Identity = 122/341 (35.78%), Postives = 192/341 (56.30%), Query Frame = 1
Query:    7 AIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVT--KTSIIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            A+  +++      VW +VE P G   +G + VFK KLD +G +E+YK  LVA+G+ Q +GI Y+E+ SP   + S+R+V++++A    E  Q+D   A+L  D++E++Y++ PE +    ++  V  LKK++YGL  A   W   F   ++ +GF ++QVD C + + + G            +L+AS +     ++ R L   F +KDLG+ SY +G  I RDR+ G L   Q  YI  +  R+ +   K S+ P V  G        P T+ E E+M QIPY  +VG+LM+A   TRPDI++ A  L ++  N G  HW+ A+K L+YL  T+D  +TY
Sbjct:  813 AMIDELESMKKNDVWDLVELPNGVKPVGCKWVFKTKLDPNGNVERYKARLVAKGYTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLDEDVYMKQPEGFKPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKRQGFMKNQVDQCTYLK-MSGSDFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGDASYVIGIEIHRDRHKGILGLSQKAYIDRVLTRYNMQQCKPSVAP-VVKGDVFGSFQCPTTEVEKEQMSQIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDYKLTY 1151          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 214 bits (544), Expect = 1.370e-59
Identity = 124/343 (36.15%), Postives = 184/343 (53.64%), Query Frame = 1
Query:    1 KIAIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITYG 1020
            K AI ++M    + G + +VE PK   ++G++ VF+ K + +  IE YK  LVAQGF QV GI + E+ +P     SI ++L++ A   WE  Q+D   AYL  D+EEEIY++ P    +  K+  V  LK+ +YGL  +G  + K    EL + G  RS+VD CVF       V              + TK       R++ + F + DLGE  + LG  + RDR+  TL+  QH YI  +  RF +    S+   +  G  LS    P T  + E+M  IPYRE++G+LM+AA  TRPDI++    L++F  N G  HW  A++  +YL  TR+  +T+G
Sbjct:  128 KEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFG 470          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 216 bits (551), Expect = 1.400e-59
Identity = 123/341 (36.07%), Postives = 190/341 (55.72%), Query Frame = 1
Query:    7 AIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSI--IPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            A+  ++D     GVW++V+  +    +G + VFK K D  G IE++K  LVA+GF Q +GI++ E+ SP   + S R++++++A    E  Q+D   A+L  ++EEEI++  PE + ++ K+  V  LKK++YGL  A   W K F   + + GF  + VD CV+ +++ G            +L+AS+  +  +     L S F +K+LGE SY LG  I RDR  G L   Q  YI  + +RFG+   +   +P   G K L+K   P+T+ E  EM  IPY  +VG+LM+A   TRPD+SF    L++F  N G  HW   +K L+YL  T+D  + Y
Sbjct:  266 AMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVY 604          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 207 bits (528), Expect = 1.530e-59
Identity = 121/321 (37.69%), Postives = 182/321 (56.70%), Query Frame = 1
Query:   67 PKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTS--IIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            P+G   +G + VFK KLD++G IE++K  LVA+GF Q  G+ Y+E+ SP   + S+R+V++M+A    E  Q+D   A+L  +++EE++++ PE +    K+  V  LKK++YGL  A   W   F   + + GF+ + VD C++ +I  G            +L+A+       Q    L   F +KD+GE SY +G  I+RDR+ G L   Q  YI  + ERF + K S  I+P   G K  S    P+ + E ++M QIPY  IVG+LM+A T TRP ISF    L ++  N G  HW+ A+K L+YL  T+D  +TY
Sbjct:    2 PEGCKRVGCKWVFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTY 320          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A2N9I7X4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I7X4_FAGSY)

HSP 1 Score: 216 bits (550), Expect = 6.610e-59
Identity = 122/341 (35.78%), Postives = 188/341 (55.13%), Query Frame = 1
Query:    7 AIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVY--CDSRKQVSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVT--KTSIIPSVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            A+  +M+   + GVW +VE P G   +G + VFK K D+ G IE+YK +LVA+GF Q +GI Y E+ SP   + S+R++L+++A    E +Q+D   A+L  D+EEE+Y++ PE +   D    V  LKK++YGL  A   W   F   + + GF  + +D C+++++  G            +L+A+  K    +  + L   F +KD+GE SY +G  I RDR  G L   Q  YI  + +RF +     S+ P V G +  +    P+ D E E+M  IPY   VG+LM+A   TRPDI+F    L ++  + G  HWR A+K ++YL  T+D  + Y
Sbjct:  409 AMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKAILVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKILKRFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMY 747          
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Match: A0A445LQ30_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445LQ30_GLYSO)

HSP 1 Score: 217 bits (553), Expect = 1.030e-58
Identity = 124/340 (36.47%), Postives = 185/340 (54.41%), Query Frame = 1
Query:    7 AIARKMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVEEEIYVELPEVYCDSRKQ--VSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQRSQVDPCVFRRILHGVVXXXXXXXXXXLLVASATKRNEEQAVRDLCSCFPIKDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIP-SVAGGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQLAKFNDNTGPTHWREAQKALQYLWPTRDLGITY 1017
            A+  ++D      VW +VE PKG   +G + VFK K D+ G +E+YK  LVA+GF Q  GI Y+E+ SP   + S R++++++A    E  Q+D   A+L  D+EE++Y++ P  +    K+  V  LKK++YGL  A   W   F   + + GF+ + VD CV+ ++    V          LL  +      E   + L S F +KD+GE SY +G  I R+R+ G L   Q  YI  + ERF + K S  P  +  G   S    P+ D E ++M  IPY  +VG++M+A T TRPDISF    L ++  N G  HW+ A+K L+YL  T+D  +TY
Sbjct:  912 AMKEEIDSMEHNDVWDLVELPKGCKRVGYKWVFKTKRDSHGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLEEDVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENTVDRCVYLKVSGSKVMFLVLYVDDILLATNDLGLFHETK-KFLSSNFEMKDMGEASYVIGIEIFRNRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDKFSLAQCPKNDLERKQMEAIPYASVVGSIMYAQTCTRPDISFATGMLGRYQSNPGMEHWKAAKKVLRYLQGTKDHILTY 1250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57214.13181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6S2B9_ROSCH3.010e-6136.78Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A5BAP9_VITVI1.500e-6037.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A438CL20_VITVI2.840e-6037.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3K4I8_NOCCA1.130e-5937.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A251UJK4_HELAN1.350e-5935.78Putative zinc finger, CCHC-type n=7 Tax=Helianthus... [more]
A0A401GP19_9APHY1.370e-5936.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SMQ0_ROSCH1.400e-5936.07Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A4V1T029_9SPHI1.530e-5937.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9I7X4_FAGSY6.610e-5935.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A445LQ30_GLYSO1.030e-5836.47Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57214contigH-elongata_contig57214:63..1302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue3.7e-53
Seed eggNOG ortholog67593.Physo131909
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1240
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57214.13181.1prot_H-elongata_contig57214.13181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57214 166..1281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.7691674-UTR-H-elongata_contig57214:62..1651622930929.7691674-UTR-H-elongata_contig57214:62..165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57214 63..165 -
1691679629.0387743-UTR-H-elongata_contig57214:62..1651691679629.0387743-UTR-H-elongata_contig57214:62..165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57214 63..165 -
1622930929.8175452-UTR-H-elongata_contig57214:1281..13021622930929.8175452-UTR-H-elongata_contig57214:1281..1302Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57214 1282..1302 -
1691679629.0702374-UTR-H-elongata_contig57214:1281..13021691679629.0702374-UTR-H-elongata_contig57214:1281..1302Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57214 1282..1302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.7872555-CDS-H-elongata_contig57214:165..12811622930929.7872555-CDS-H-elongata_contig57214:165..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57214 166..1281 -
1691679629.0486903-CDS-H-elongata_contig57214:165..12811691679629.0486903-CDS-H-elongata_contig57214:165..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57214 166..1281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57214.13181.1

>prot_H-elongata_contig57214.13181.1 ID=prot_H-elongata_contig57214.13181.1|Name=mRNA_H-elongata_contig57214.13181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=372bp
MDGQTTRGVWQVVERPKGKTVLGTRVVFKRKLDNDGRIEKYKCLLVAQGF
RQVKGIHYEESSSPTLAQVSIRMVLSMIAALGWEARQLDGNMAYLEADVE
EEIYVELPEVYCDSRKQVSLLKKAMYGLAHAGLLWLKTFGIELEAKGFQR
SQVDPCVFRRILHGVVVVVIVVYVDDLLVASATKRNEEQAVRDLCSCFPI
KDLGETSYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVA
GGKALSKPDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFTAHQL
AKFNDNTGPTHWREAQKALQYLWPTRDLGITYGGEPGGGGIISVGRHRLR
HLPGHGSLSVGGGGDDGWRGH*
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mRNA from alignment at H-elongata_contig57214:63..1302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57214.13181.1 ID=mRNA_H-elongata_contig57214.13181.1|Name=mRNA_H-elongata_contig57214.13181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1240bp|location=Sequence derived from alignment at H-elongata_contig57214:63..1302- (Himanthalia elongata Himel1 dioecious)
AAAATAGCGATCGCGCGCAAGATGGATGGGCAAACTACTCGGGGCGTGTG GCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAG TTTTCAAGCGCAAACTCGACAACGATGGAAGGATCGAGAAGTATAAATGT CTTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAAGA ATCCTCCTCTCCGACTCTTGCGCAGGTCAGCATTAGGATGGTACTCAGCA TGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGGCAACATGGCC TACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGT ATACTGTGACTCCAGGAAGCAAGTCAGTCTACTAAAGAAGGCAATGTACG GACTCGCCCACGCCGGGCTGCTGTGGCTAAAAACGTTTGGGATCGAGCTC GAGGCGAAAGGTTTTCAGAGATCTCAAGTCGACCCATGCGTGTTCCGACG GATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTCGATGACC TGCTGGTTGCTAGTGCGACGAAACGTAACGAGGAGCAAGCGGTGAGGGAC CTGTGCTCTTGTTTCCCCATCAAGGATCTGGGGGAGACTTCGTATTACCT GGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGACGTTCGACC AGCATCAGTACATACAAACTATGGCGGAACGTTTTGGCGTGACGAAGACC AGCATCATCCCGTCCGTGGCAGGAGGAAAGGCCCTTTCGAAACCAGACAG TCCGCAAACGGACGCAGAGGTTGAAGAAATGCACCAGATTCCCTACCGAG AAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATT TCATTCACTGCGCACCAACTGGCGAAATTCAACGACAACACGGGACCGAC ACACTGGAGGGAAGCCCAAAAAGCGCTGCAATATTTATGGCCCACTCGGG ACCTCGGGATCACCTACGGAGGGGAACCGGGGGGGGGGGGAATTATCAGC GTGGGTCGACACAGACTACGACACCTTCCCGGACACGGATCGCTCAGTGT CGGGGGGGGCGGTGATGATGGCTGGCGGGGCCATTAGTTGGTTCTCACGA GTGCAAAAGGTAACGGCGGCCGCGTCGTCCGAATCGGAATACGTCGCGCT GGCTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig57214:63..1302-

>mRNA_H-elongata_contig57214.13181.1 ID=mRNA_H-elongata_contig57214.13181.1|Name=mRNA_H-elongata_contig57214.13181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2232bp|location=Sequence derived from alignment at H-elongata_contig57214:63..1302- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAACTACTCGGGGCGTGTGGCAGGTGGTGGAGCGCCCAAA
AGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAACTCGACA
ACGATGGAAGGATCGAGAAGTATAAATGTCTTCTCGTGGCGCAGGGTTTC
AGGCAGGTCAAAGGCATACACTACGAAGAATCCTCCTCTCCGACTCTTGC
GCAGGTCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGACGGCAACATGGCCTACCTGGAGGCCGATGTGGAG
GAGGAGATCTACGTTGAGCTCCCGGAGGTATACTGTGACTCCAGGAAGCA
AGTCAGTCTACTAAAGAAGGCAATGTACGGACTCGCCCACGCCGGGCTGC
TGTGGCTAAAAACGTTTGGGATCGAGCTCGAGGCGAAAGGTTTTCAGAGA
TCTCAAGTCGACCCATGCGTGTTCCGACGGATTCTCCACGGGGTAGTGGT
AGTCGTCATTGTGGTCTACGTCGATGACCTGCTGGTTGCTAGTGCGACGA
AACGTAACGAGGAGCAAGCGGTGAGGGACCTGTGCTCTTGTTTCCCCATC
AAGGATCTGGGGGAGACTTCGTATTACCTGGGATGCCACATCACGCGGGA
CCGGAACGCCGGGACACTGACGTTCGACCAGCATCAGTACATACAAACTA
TGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTGGCA
GGAGGAAAGGCCCTTTCGAAACCAGACAGTCCGCAAACGGACGCAGAGGT
TGAAGAAATGCACCAGATTCCCTACCGAGAAATCGTTGGGGCCCTAATGT
GGGCAGCGACGATGACCAGGCCCGACATTTCATTCACTGCGCACCAACTG
GCGAAATTCAACGACAACACGGGACCGACACACTGGAGGGAAGCCCAAAA
AGCGCTGCAATATTTATGGCCCACTCGGGACCTCGGGATCACCTACGGAG
GGGAACCGGGGGGGGGGGGAATTATCAGCGTGGGTCGACACAGACTACGA
CACCTTCCCGGACACGGATCGCTCAGTGTCGGGGGGGGCGGTGATGATGG
CTGGCGGGGCCATTAGATGGATGGGCAAACTACTCGGGGCGTGTGGCAGG
TGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTC
AAGCGCAAACTCGACAACGATGGAAGGATCGAGAAGTATAAATGTCTTCT
CGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAAGAATCCT
CCTCTCCGACTCTTGCGCAGGTCAGCATTAGGATGGTACTCAGCATGATC
GCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGGCAACATGGCCTACCT
GGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGTATACT
GTGACTCCAGGAAGCAAGTCAGTCTACTAAAGAAGGCAATGTACGGACTC
GCCCACGCCGGGCTGCTGTGGCTAAAAACGTTTGGGATCGAGCTCGAGGC
GAAAGGTTTTCAGAGATCTCAAGTCGACCCATGCGTGTTCCGACGGATTC
TCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTCGATGACCTGCTG
GTTGCTAGTGCGACGAAACGTAACGAGGAGCAAGCGGTGAGGGACCTGTG
CTCTTGTTTCCCCATCAAGGATCTGGGGGAGACTTCGTATTACCTGGGAT
GCCACATCACGCGGGACCGGAACGCCGGGACACTGACGTTCGACCAGCAT
CAGTACATACAAACTATGGCGGAACGTTTTGGCGTGACGAAGACCAGCAT
CATCCCGTCCGTGGCAGGAGGAAAGGCCCTTTCGAAACCAGACAGTCCGC
AAACGGACGCAGAGGTTGAAGAAATGCACCAGATTCCCTACCGAGAAATC
GTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCATT
CACTGCGCACCAACTGGCGAAATTCAACGACAACACGGGACCGACACACT
GGAGGGAAGCCCAAAAAGCGCTGCAATATTTATGGCCCACTCGGGACCTC
GGGATCACCTACGGAGGGGAACCGGGGGGGGGGGGAATTATCAGCGTGGG
TCGACACAGACTACGACACCTTCCCGGACACGGATCGCTCAGTGTCGGGG
GGGGCGGTGATGATGGCTGGCGGGGCCATTAG
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