mRNA_H-elongata_contig11685.1318.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11685.1318.1
Unique NamemRNA_H-elongata_contig11685.1318.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.880e-47
Identity = 91/234 (38.89%), Postives = 138/234 (58.97%), Query Frame = 1
Query:   13 IVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            +V VPG+G NLFSV  A   G+ ++F  +N RLE  +  VP++ +    +G +  S  + L  +  G +        LA+     D +WHRR+GH++ +SLD+LR++  +GI +   V DC  C +GK     HPK A + ++ PFQL + D +GPFTP A+G +KY ++  D++TKW  V L+  K  ++ +L+LF   T+IP   RI   RADKG E+T   +RQYCL+  I
Sbjct:  489 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 721          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.700e-47
Identity = 90/234 (38.46%), Postives = 138/234 (58.97%), Query Frame = 1
Query:   13 IVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            ++ VPG+G NLFSV  A   G+ ++F  +N RLE  +  VP++ +    +G +  S  + L  +  G +        LA+     D +WHRR+GH++ +SLD+LR++  +GI +   V DC  C +GK     HPK A + ++ PFQL + D +GPFTP A+G +KY ++  D++TKW  V L+  K  ++ +L+LF   T+IP   RI   RADKG E+T   +RQYCL+  I
Sbjct:  489 VMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 721          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 4.350e-46
Identity = 89/231 (38.53%), Postives = 135/231 (58.44%), Query Frame = 1
Query:   22 VPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            VPG+G NLFSV  A   G+ ++F  +N RLE  +  VP++ +    +G +  S  + L  +  G +        L +     D +WHRR+GH++ +SLD+LR++  +GI +   V DC  C +GK     HPK A + ++ PFQL + D +GPFTP A+G +KY ++  D++TKW  V L+  K  ++ +L+LF   T+IP   RI   RADKG E+T   +RQYCL+  I
Sbjct:  614 VPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 843          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.510e-42
Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 1
Query:   34 GRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRS------ESGNLYSFVLDL-------SVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            G NLFSV  A  KG+ T+F  +N RLE  +V  P+++          +YS  + L       +V G     LA+  V +  +WHRR+GH++ +SLD+LRK    G+ +   V+DC VC +GK     HPK   + + RPFQ    D +GPFTP A+G +KY ++  D+ TKW  + L+  +  ++ SL LF   T++P G RI   R D G E+T  EFRQYC +  I
Sbjct:  208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALK-VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGI 434          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.720e-40
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  145 ESGNLYSFVLDLSVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            E   LY F +DL   G     +A+  V +  +WHRR+GH+H +SLDILRK  G G+ +   +S C VCAVG  +  +HPK A++  +RPFQL   DLMGPF+P A+G + Y+ +  D++ KW  V+L+  K   + +LQLF  S + P   R+   RADKGGEYT   F +YC +  I
Sbjct:  239 ECDELYHFTMDLPETGE-ISGVAL-PVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGI 414          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.140e-38
Identity = 89/240 (37.08%), Postives = 124/240 (51.67%), Query Frame = 1
Query:   22 VPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSESGNLYSFVLDLS----VDGYGAKKLA----------MNAV----VNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            VPG+GRN+FS  +  K+G+  + +     L      +PL  +  +     LD++    V   G K L            NAV    V+   WHRRLGHL+A+SLDILRK  GT + + +++S CGVC + K +   HPK +  +++RP QL   D MGP  P A    G + Y  ++TD+YTK   VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I
Sbjct:  278 VPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 517          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 8.580e-38
Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   22 VPGIGRNLFSVITAAKKGIVTIFDFENFRLE-------GFNVTVPLRSESGNLYSFVLDLSVDGYGAKKLA------MNAVVNDQV----------WHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYC 663
            VPG+GR+LFS  TA KKG  TI   +  R+E       G  + + LR E G LY   LD+ +D    ++        MN   N  V          WHRRL H H   ++   +   TG+   + +  C  C + K     HPKTA H   +P Q  Y DL+GP +P A G + YVS+ TDEY++   VYL+ TKD+A+ +L+ F+   +IP G R+ R R+D GGEYT E + ++C
Sbjct:  379 VPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLY--FLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFC 611          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.250e-37
Identity = 94/251 (37.45%), Postives = 126/251 (50.20%), Query Frame = 1
Query:   22 VPGIGRNLFSVITAA-----------KKGIVTIFDFENFRLEGFNVTVPLRSESGNLYSFVLDLS----VDGYGAKKLA----------MNAV----VNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            VPG+GRN+FS  T             KKG+  + +     L   +  +PL  +  +     LD++    V   G K L            NAV    V+   WHRRLGHL+A+SLDILRK  GTG+ + +++S CGVC + K +   HPK +  +I+RP QL   D MGP  P A    G + Y  +ITD+YTK   VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I
Sbjct:  319 VPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 569          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 7.360e-37
Identity = 68/152 (44.74%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  223 VVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            V +  +WHRR+GH++++SLDILRK    G+   E V DCG CA+GK     HPK A + + RPFQL + D +GPFTP A+G +KY ++  D+ TKW  + L+  K  ++ SL LF   T++P G  I   R D G E+T  EFRQY  +  I
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGI 674          
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.140e-36
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  223 VVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
            +V+   WHRRLGHL+A+SLDILRK  GTG+ + +++S CGVC + K +   HPK +  +++RP QL   D MGP  P A    G + Y  +ITD+YTK   VYLL  K    +++  +        G RI   R DKGGE TG EFR YC  + I
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.880e-4738.89Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE3.700e-4738.46Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.350e-4638.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM1_9PHAE2.510e-4238.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1J1_9PHAE3.720e-4043.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE6.140e-3837.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE8.580e-3837.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE2.250e-3737.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE7.360e-3744.74Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KZ34_9PHAE2.140e-3644.52Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11685contigH-elongata_contig11685:8123..8800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.3
Seed ortholog evalue6.1e-19
Seed eggNOG ortholog102107.XP_008237766.1
EggNOG free text desc.NB-ARC domain
EggNOG OGs3894G@33090,3GY0K@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.647065-CDS-H-elongata_contig11685:8122..88001622929679.647065-CDS-H-elongata_contig11685:8122..8800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11685 8123..8800 +
1691679116.8205802-CDS-H-elongata_contig11685:8122..88001691679116.8205802-CDS-H-elongata_contig11685:8122..8800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11685 8123..8800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11685.1318.1prot_H-elongata_contig11685.1318.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11685 8123..8800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11685.1318.1

>prot_H-elongata_contig11685.1318.1 ID=prot_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
VWIDIVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSES
GNLYSFVLDLSVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRY
GTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFT
PVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGR
IVRWRADKGGEYTGEEFRQYCLETDI
back to top

mRNA from alignment at H-elongata_contig11685:8123..8800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11685.1318.1 ID=mRNA_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=678bp|location=Sequence derived from alignment at H-elongata_contig11685:8123..8800+ (Himanthalia elongata Himel1 dioecious)
GTTTGGATTGATATCGTGACGGTGCCCGGGATTGGGCGCAACCTGTTCTC GGTGATAACAGCAGCCAAAAAGGGCATTGTCACCATTTTCGACTTCGAAA ATTTCAGGCTGGAGGGATTCAACGTCACCGTCCCGCTACGGAGCGAAAGC GGCAACCTCTACTCGTTCGTGCTGGACTTGAGTGTGGACGGATATGGCGC CAAGAAGCTAGCAATGAACGCAGTCGTCAATGACCAGGTGTGGCACCGAC GGCTGGGTCATCTCCATGCGCAGAGTCTGGATATTCTACGCAAGCGATAC GGCACTGGCATCACCTTCGAGGAGGCCGTCTCGGACTGCGGCGTTTGCGC CGTGGGGAAGGATCAACATATTTCTCATCCCAAGACGGCCAATCACAAGA TCAACCGGCCTTTTCAGCTGTGCTACGGAGACCTGATGGGGCCCTTCACG CCTGTGGCCATAGGTGACTACAAGTACGTCAGCGAAATAACCGACGAGTA CACAAAGTGGACCGCCGTCTACTTGTTGACTACTAAGGACCAAGCTCTTC AGTCGCTTCAACTGTTCGTCGGCTCGACAATCATTCCATTCGGCGGTCGC ATCGTACGTTGGCGTGCCGACAAGGGCGGCGAGTACACCGGGGAGGAGTT CCGGCAGTACTGCTTGGAGACCGATATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11685:8123..8800+

>mRNA_H-elongata_contig11685.1318.1 ID=mRNA_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig11685:8123..8800+ (Himanthalia elongata Himel1 dioecious)
GTTTGGATTGATATCGTGACGGTGCCCGGGATTGGGCGCAACCTGTTCTC
GGTGATAACAGCAGCCAAAAAGGGCATTGTCACCATTTTCGACTTCGAAA
ATTTCAGGCTGGAGGGATTCAACGTCACCGTCCCGCTACGGAGCGAAAGC
GGCAACCTCTACTCGTTCGTGCTGGACTTGAGTGTGGACGGATATGGCGC
CAAGAAGCTAGCAATGAACGCAGTCGTCAATGACCAGGTGTGGCACCGAC
GGCTGGGTCATCTCCATGCGCAGAGTCTGGATATTCTACGCAAGCGATAC
GGCACTGGCATCACCTTCGAGGAGGCCGTCTCGGACTGCGGCGTTTGCGC
CGTGGGGAAGGATCAACATATTTCTCATCCCAAGACGGCCAATCACAAGA
TCAACCGGCCTTTTCAGCTGTGCTACGGAGACCTGATGGGGCCCTTCACG
CCTGTGGCCATAGGTGACTACAAGTACGTCAGCGAAATAACCGACGAGTA
CACAAAGTGGACCGCCGTCTACTTGTTGACTACTAAGGACCAAGCTCTTC
AGTCGCTTCAACTGTTCGTCGGCTCGACAATCATTCCATTCGGCGGTCGC
ATCGTACGTTGGCGTGCCGACAAGGGCGGCGAGTACACCGGGGAGGAGTT
CCGGCAGTACTGCTTGGAGACCGATATTGTTTGGATTGATATCGTGACGG
TGCCCGGGATTGGGCGCAACCTGTTCTCGGTGATAACAGCAGCCAAAAAG
GGCATTGTCACCATTTTCGACTTCGAAAATTTCAGGCTGGAGGGATTCAA
CGTCACCGTCCCGCTACGGAGCGAAAGCGGCAACCTCTACTCGTTCGTGC
TGGACTTGAGTGTGGACGGATATGGCGCCAAGAAGCTAGCAATGAACGCA
GTCGTCAATGACCAGGTGTGGCACCGACGGCTGGGTCATCTCCATGCGCA
GAGTCTGGATATTCTACGCAAGCGATACGGCACTGGCATCACCTTCGAGG
AGGCCGTCTCGGACTGCGGCGTTTGCGCCGTGGGGAAGGATCAACATATT
TCTCATCCCAAGACGGCCAATCACAAGATCAACCGGCCTTTTCAGCTGTG
CTACGGAGACCTGATGGGGCCCTTCACGCCTGTGGCCATAGGTGACTACA
AGTACGTCAGCGAAATAACCGACGAGTACACAAAGTGGACCGCCGTCTAC
TTGTTGACTACTAAGGACCAAGCTCTTCAGTCGCTTCAACTGTTCGTCGG
CTCGACAATCATTCCATTCGGCGGTCGCATCGTACGTTGGCGTGCCGACA
AGGGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTGCTTGGAGACC
GATATT
back to top