mRNA_H-elongata_contig5720.13176.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5720.13176.1
Unique NamemRNA_H-elongata_contig5720.13176.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5720.13176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5720contigH-elongata_contig5720:7533..9186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size615
Cds size600
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5720.13176.1prot_H-elongata_contig5720.13176.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5720 7533..9173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.0083869-CDS-H-elongata_contig5720:7532..79991622930929.0083869-CDS-H-elongata_contig5720:7532..7999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5720 7533..7999 -
1691679628.8248348-CDS-H-elongata_contig5720:7532..79991691679628.8248348-CDS-H-elongata_contig5720:7532..7999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5720 7533..7999 -
1622930929.022408-CDS-H-elongata_contig5720:9040..91731622930929.022408-CDS-H-elongata_contig5720:9040..9173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5720 9041..9173 -
1691679628.8331535-CDS-H-elongata_contig5720:9040..91731691679628.8331535-CDS-H-elongata_contig5720:9040..9173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5720 9041..9173 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.0338192-UTR-H-elongata_contig5720:9173..91861622930929.0338192-UTR-H-elongata_contig5720:9173..9186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5720 9174..9186 -
1691679628.841065-UTR-H-elongata_contig5720:9173..91861691679628.841065-UTR-H-elongata_contig5720:9173..9186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5720 9174..9186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5720.13176.1

>prot_H-elongata_contig5720.13176.1 ID=prot_H-elongata_contig5720.13176.1|Name=mRNA_H-elongata_contig5720.13176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MITGGLLNGDGLRATWATIFGWSLTFLIVIIKAIQAKAAADANRARGWNG
VQRVLDKATRQSLLTYFVLDSSKHEQEHHTNEVATERDEEEGCGGGEKVG
GIASKGGTTPNSSTLPPSFDETTTVVPGCTPITVARELCLKVEDDCEHDL
TPAMEASTSARERPPSDDLPPAGVSAQLTEEDSVAFREGSCRSLCLGTKK
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mRNA from alignment at H-elongata_contig5720:7533..9186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5720.13176.1 ID=mRNA_H-elongata_contig5720.13176.1|Name=mRNA_H-elongata_contig5720.13176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1654bp|location=Sequence derived from alignment at H-elongata_contig5720:7533..9186- (Himanthalia elongata Himel1 dioecious)
GATCTCCTTTGCGATGATCACGGGAGGACTGCTAAACGGCGATGGCTTAC
GGGCAACTTGGGCCACAATTTTTGGCTGGTCGCTTACATTCTTGATTGTA
ATCATCAAGGCGATCCAAGCAAAAGCCGCCGCTGACGCCAACAGAGGTGA
GAGTTATCACGTCCGAGGGTTTCATTATATATTTATTTTTTTCGCGTGCT
TTCTTGGTCGTGATGATCGAAATAATTCAAGCACAGGCCGCCGCATGCGC
GAATAGAGGAGTGGATATTTTATCGTGCCCGAGGGTGGCTCTCCTTGGGT
CAAAATACATCTATTCGGTTTTCTAGAGCCTATATACTCGGCCACAGTAT
TACTTGTGGGATGATGTACTTAAGTATGCGTTTTACATTTTTCTTAACCC
TTAAGGAACTGAATTTCAAGTTATATATTGAAATTAGTAAGTAAAAAAAC
AGATCGAGTTCCATAGGGGTTAAAAAAAACATGAACTCATTCAAACCCTG
TGAACATCCTCGAGAGGTGCAGTCCAGGGGACCAATTACCGCCAGGTTCG
AATGTGTACATTACTACCTTTGAGCACAAAATCGCTACATGTGATTTATC
GTGTTCCCCAGTAGTAATGACGTCATCGGGTCGACAGCATAATATCATGG
ATTCCATTATTACTACCCTGTATACTTAAATTATTCATCATGTGGGGACG
CCAAACCAGAGCCTAGAGAGTTTTCAAGTCGCTTTAGTGAGGCGTGTCTG
TTGTTTGACTGTGCTAAAAAATGGGAATTGTTAAATACCACAAGTCGTGG
CTGTTCAGCACGAACTTTTTCTCCCTTCTCTATAGTATTGGGGCAAGGCG
ACACATAGCACTACGTACACACCCCAATGCGAAAACGATCGGGTGTTCCT
CTTCGAGTATAGCCGTGACGCACGTACACGATGCATAACAACGGCAAAAC
TGTATCTTGCGGCCACCGCTATCACGGTAAGGACGACCTTAATGCGACAC
ATTTACTTGGCCCCACTTTAGTGCGTTGCGTGCTCAACAGACAGGCGCAT
GGTTTTCCTCCGGTAATCATTCGGGCGCCCCTACACCATCATCGCAGCTT
CAAAAATGCATCCAAATCCGTCATTCCGTTCCAAGCCGTAAAACACATTT
TTGTTCATGTTACTACCGATGTTCCGCTAAAATCCAGCGCGGGGGTGGAA
TGGCGTACAGAGAGTGCTCGACAAGGCGACGAGGCAATCATTGCTCACGT
ATTTCGTTCTCGACTCTTCTAAACACGAACAAGAGCACCACACCAATGAA
GTCGCCACCGAGAGAGATGAGGAGGAAGGATGCGGTGGAGGCGAGAAGGT
TGGTGGTATTGCGAGCAAGGGCGGTACCACCCCGAACTCTTCGACGCTCC
CCCCTTCCTTCGATGAAACTACAACGGTTGTGCCGGGATGCACTCCGATA
ACTGTGGCTCGAGAGTTGTGCCTTAAGGTGGAGGACGACTGCGAGCATGA
TTTGACTCCAGCAATGGAGGCGTCCACCAGCGCTCGCGAGAGACCTCCGT
CTGACGATCTACCGCCTGCAGGAGTTTCGGCCCAGCTCACCGAAGAAGAT
TCGGTCGCCTTCAGAGAAGGATCTTGTAGATCCTTGTGCCTCGGTACCAA
GAAA
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Coding sequence (CDS) from alignment at H-elongata_contig5720:7533..9186-

>mRNA_H-elongata_contig5720.13176.1 ID=mRNA_H-elongata_contig5720.13176.1|Name=mRNA_H-elongata_contig5720.13176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig5720:7533..9186- (Himanthalia elongata Himel1 dioecious)
ATGATCACGGGAGGACTGCTAAACGGCGATGGCTTACGGGCAACTTGGGC
CACAATTTTTGGCTGGTCGCTTACATTCTTGATTGTAATCATCAAGGCGA
TCCAAGCAAAAGCCGCCGCTGACGCCAACAGAGATGATCACGGGAGGACT
GCTAAACGGCGATGGCTTACGGGCAACTTGGGCCACAATTTTTGGCTGGT
CGCTTACATTCTTGATTGTAATCATCAAGGCGATCCAAGCAAAAGCCGCC
GCTGACGCCAACAGAGCGCGGGGGTGGAATGGCGTACAGAGAGTGCTCGA
CAAGGCGACGAGGCAATCATTGCTCACGTATTTCGTTCTCGACTCTTCTA
AACACGAACAAGAGCACCACACCAATGAAGTCGCCACCGAGAGAGATGAG
GAGGAAGGATGCGGTGGAGGCGAGAAGGTTGGTGGTATTGCGAGCAAGGG
CGGTACCACCCCGAACTCTTCGACGCTCCCCCCTTCCTTCGATGAAACTA
CAACGGTTGTGCCGGGATGCACTCCGATAACTGTGGCTCGAGAGTTGTGC
CTTAAGGTGGAGGACGACTGCGAGCATGATTTGACTCCAGCAATGGAGGC
GTCCACCAGCGCTCGCGAGAGACCTCCGTCTGACGATCTACCGCCTGCAG
GAGTTTCGGCCCAGCTCACCGAAGAAGATTCGGTCGCCTTCAGAGAAGGA
TCTTGTAGATCCTTGTGCCTCGGTACCAAGAAACGCGGGGGTGGAATGGC
GTACAGAGAGTGCTCGACAAGGCGACGAGGCAATCATTGCTCACGTATTT
CGTTCTCGACTCTTCTAAACACGAACAAGAGCACCACACCAATGAAGTCG
CCACCGAGAGAGATGAGGAGGAAGGATGCGGTGGAGGCGAGAAGGTTGGT
GGTATTGCGAGCAAGGGCGGTACCACCCCGAACTCTTCGACGCTCCCCCC
TTCCTTCGATGAAACTACAACGGTTGTGCCGGGATGCACTCCGATAACTG
TGGCTCGAGAGTTGTGCCTTAAGGTGGAGGACGACTGCGAGCATGATTTG
ACTCCAGCAATGGAGGCGTCCACCAGCGCTCGCGAGAGACCTCCGTCTGA
CGATCTACCGCCTGCAGGAGTTTCGGCCCAGCTCACCGAAGAAGATTCGG
TCGCCTTCAGAGAAGGATCTTGTAGATCCTTGTGCCTCGGTACCAAGAAA
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